Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21] 42,990 sequences; 724,284,658 total letters Query= NC_019401.1 Length=358663 Score E Sequences producing significant alignments: (Bits) Value seq4438 98.7 2e-15 seq2289 93.3 1e-13 >seq4438 Length=6732 Score = 98.7 bits (108), Expect = 2e-15 Identities = 324/494 (66%), Gaps = 16/494 (3%) Strand=Plus/Minus Query 150310 AGGTAAACTTGATCCACTAATTGGTCGCGAAACTGAACTT-GATGATCTAATTCAGATTC 150368 ||| ||||||||||| | |||||| | || ||| | || || |||||| ||||| Sbjct 4978 AGGAAAACTTGATCCTGTGATTGGTAGGGATGAAGAAATCCGAAGAG-TAATTCGGATTC 4920 Query 150369 TTTCTCGTAAAACCAAAAAGAAT--GGTGCGTTAGTTGGTGAACCAGGTGTTGGTAAAAC 150426 | || | | || || || ||| ||||| ||| ||||||| || |||||||||||||| Sbjct 4919 TATCGAGGAGGACAAAGAACAATCCGGTGC-TTA-TTGGTGAGCCTGGTGTTGGTAAAAC 4862 Query 150427 ACAAATCGTTGACGGATTAGCACAACGCATCGCTAATGGTGATGTTCCAGATTCTATGAA 150486 | | ||||| || |||||||| | || | | || ||||||||| | || Sbjct 4861 AGCTGTAGTTGAAGGGCTAGCACAAAGGATTGTTCGAGGAGATGTTCCAAGCAATTTGGC 4802 Query 150487 AGATGTTGAAATTCTTTCTTTGAATATGGGTGCATTTACTGCTGGTACTAAGTATCGTGG 150546 |||||| || | | ||| ||||||| ||| | | |||||| | ||||| | || Sbjct 4801 TGATGTTAGGCTTATAGCATTGGATATGGGAGCACTCATTGCTGGAGCAAAGTACAGAGG 4742 Query 150547 TGAATTCGAAGAACG--TGTAGACAATTTGCTACAAGAACTAAAAGAACGCGATG---AT 150601 |||||| ||||| | || || | | | || | ||| | |||| || | | Sbjct 4741 TGAATTTGAAGAGAGGTTGAAGGC--TGTTCTGAAGGAAGTGGAAGATGCAGAAGGGAAA 4684 Query 150602 GTTATTCTGTTCATCGATGAAATCCATACTATTATGGGTGCTGGTGCGACTGGCGGCGGT 150661 || ||||| ||||| ||||| ||||| || | ||||||||| ||| || || Sbjct 4683 GTAATTCTCTTCATTGATGAGATCCACTTGGTTTTAGGTGCTGGTAGGAC---CGAAGGA 4627 Query 150662 TCTTTGGATATGAGCAATATGTTAAAACCTGCTCTATCTCGCGGTGAAATTCGTGTCATC 150721 || ||||| ||| |||| ||||| || || | || || | || ||| Sbjct 4626 TCAATGGATGCTGCTAATTTGTTCAAACCGATGCTTGCTAGGGGCCAATTACGGTGCATT 4567 Query 150722 GGTGCAACAACCTACGATGAATATCGTAAACACATTGAAAAAGATGCAGCACTACAGCGT 150781 |||||||||||| || || || | ||| | | || |||||||| ||| | | | Sbjct 4566 GGTGCAACAACCCTGGAAGAGTACAGGAAATATGTGGAGAAAGATGCTGCATTCGAAAGG 4507 Query 150782 CGTTTCATGAAGGT 150795 |||||| | |||| Sbjct 4506 CGTTTCCAGCAGGT 4493 >seq2289 Length=9649 Score = 93.3 bits (102), Expect = 1e-13 Identities = 175/251 (70%), Gaps = 6/251 (2%) Strand=Plus/Plus Query 150311 GGTAAACTTGATCCACTAATTGGTCGCGAAACTGAACTT-GATGATCTAATTCAGATTCT 150369 || ||||||||||| | |||||| | || ||| || || || | |||| |||||| Sbjct 1214 GGAAAACTTGATCCTGTGATTGGTAGGGATGAAGAAATTCGAAGAG-TGATTCGGATTCT 1272 Query 150370 TTCTCGTAAAACCAAAAAGAAT--GGTGCGTTAGTTGGTGAACCAGGTGTTGGTAAAACA 150427 || | | || || || ||| ||||| ||| ||||||| || ||||||||||||||| Sbjct 1273 ATCGAGGAGGACAAAGAACAATCCGGTGC-TTA-TTGGTGAGCCTGGTGTTGGTAAAACA 1330 Query 150428 CAAATCGTTGACGGATTAGCACAACGCATCGCTAATGGTGATGTTCCAGATTCTATGAAA 150487 | ||||| || |||||||| | || | | || ||||||||| | | || Sbjct 1331 GCTGTAGTTGAAGGGCTAGCACAAAGGATTGTTCGAGGCGATGTTCCAAGTAATTTGGCT 1390 Query 150488 GATGTTGAAATTCTTTCTTTGAATATGGGTGCATTTACTGCTGGTACTAAGTATCGTGGT 150547 |||||| | | | ||| ||||||| ||| | | |||||| || ||||| | ||| Sbjct 1391 GATGTTAGGGTGATCGCATTGGATATGGGAGCACTCATTGCTGGAACAAAGTACAGAGGT 1450 Query 150548 GAATTCGAAGA 150558 ||||| ||||| Sbjct 1451 GAATTTGAAGA 1461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1146958296449020