Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21]
42,990 sequences; 724,284,658 total letters
Query= NC_019443.1
Length=172879
Score E
Sequences producing significant alignments: (Bits) Value
seq11014 172 6e-38
seq20193 150 2e-31
seq24530 134 2e-26
seq25757 116 4e-21
seq31657 107 2e-18
seq8181 100 3e-16
seq20218 91.5 2e-13
seq46 91.5 2e-13
seq15728 87.8 2e-12
>seq11014
Length=29319
Score = 172 bits (190), Expect = 6e-38
Identities = 248/352 (70%), Gaps = 0/352 (0%)
Strand=Plus/Plus
Query 162545 GGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGCAGCAACTTGCTTCATCATTGCAT 162604
|||| ||||| |||||||||||| ||| | | || | || || || ||||| |
Sbjct 10082 GGTTTGGTGTTTTGATGATCCCTACCTTATTGACGGCWACTTCTGTATTTATTATTGCCT 10141
Query 162605 TCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTTCACTTC 162664
|||||| || |||||||| || || |||||||| | ||||||||| |||| || || |
Sbjct 10142 TCATTGTTGCTCCTCCAGTAGACATTGATGGTATTGGTGAACCTGTTTCAGGGTCTCTAC 10201
Query 162665 TCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTGGTCTTC 162724
| || || |||||||| || || ||||| | |||||| ||| ||||| ||| | |
Sbjct 10202 TTTACGGAAACAACATTATTTCCGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTAC 10261
Query 162725 ACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTGGACCTT 162784
| || || || ||||||||||| ||| | ||||||| ||||| | || ||||| ||||
Sbjct 10262 ATTTTTACCCAATCTGGGAAGCGGCATCCGTTGATGAATGGTTATTCAACGGTGGTCCTT 10321
Query 162785 TCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGTGGTCGTCAGTGGG 162844
|||| | || | |||||| | | || | | ||| |||| | ||||||
Sbjct 10322 ATGAACTAATTGTTCTACACTTCTTACTTGGCGTAGCTTGTTACATGGGTCRTGAGTGGG 10381
Query 162845 AACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATACTCTGC 162896
| ||| | ||| | |||||||| |||||||| ||||||||| || ||
Sbjct 10382 AGCTTAGCTTCCGTSTRGGTATGCGACCTTGGATTGCTGTTGCATATTCAGC 10433
>seq20193
Length=7469
Score = 150 bits (166), Expect = 2e-31
Identities = 235/338 (70%), Gaps = 0/338 (0%)
Strand=Plus/Minus
Query 162541 GGTTGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGCAGCAACTTGCTTCATCATT 162600
|| ||||| ||||| ||||||||| || ||| | | ||| | | || || |||
Sbjct 6795 GGATGGTTTGGTGTTTTGATGATCTCTACCTTATTGACGGCAACTTYTGTATTTATTATT 6736
Query 162601 GCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTTCA 162660
|| |||||||| || |||||||| || || |||||||| | ||||||||| |||| ||
Sbjct 6735 GCCTTCATTGCTGCTCCTCCAGTAGACATTGATGGTATTCGTGAACCTGTTTCAGGGTCT 6676
Query 162661 CTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTGGT 162720
|| || | || |||||||| || || ||||| | |||||| ||| ||||| |||
Sbjct 6675 CTACTTHACGGAAACAACATTATTTCCGGTGCCATTATTCCTACTTCTGCAGCTATAGGT 6616
Query 162721 CTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTGGA 162780
| || || || || ||||||||||| || | ||||||| ||||| || || | |||
Sbjct 6615 TTACATTTTTACCCAATCTGGGAAGCGACATCCGTTGATGAATGGTTATACAACGRTGGT 6556
Query 162781 CCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGTGGTCGTCAG 162840
|||| |||| | || | |||||| | | || | | ||| |||||| ||
Sbjct 6555 CCTTATGAACTAATTGTTCTACACTTCTTACTTGGCGTAGCTTGTTACATGGGTCGTGAG 6496
Query 162841 TGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGAT 162878
||||| ||| | || | ||||||| ||||||||
Sbjct 6495 TGGGAGCTTAGCTTCCATCTGGGTATGCAACCTTGGAT 6458
>seq24530
Length=26533
Score = 134 bits (148), Expect = 2e-26
Identities = 196/278 (71%), Gaps = 0/278 (0%)
Strand=Plus/Minus
Query 162982 GGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGCACAACATCCTAATGCACCCCTTC 163041
|||||||| || | |||| | || ||||| || || ||||||||||| |||||||| ||
Sbjct 795 GGTACTTTCAATTTCATGATTGTATTCCAGGCTGAVCACAACATCCTTATGCACCCATTT 736
Query 163042 CATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCACTCTTTAGTGCTATGCACGGTTCT 163101
|| || | || | || |||||| | || || || || ||| ||||||| | |||
Sbjct 735 CACATCTTAGGCCTAGCTGGTGTAAAATGCGGCTCCCTATTCAGTACTATGCATGCTTCA 676
Query 163102 CTTGTTACTTCTTCTCTTATCAGAGAAACTACTGAGCAAGAGTCACAGAACTACGGTTAT 163161
|||| |||||| | |||| || |||| || | | || || || | |||||
Sbjct 675 TTTGTAACTTCTAGTTTTATAAGGGAAAGCACATAAAATGAATCTGCTAATGAAGGTTAC 616
Query 163162 AAGTTCGGACAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGATACTTTGGTCGC 163221
| |||| ||||| ||||| ||||| || || || || | ||||| || ||||| |
Sbjct 615 AGATTCGATCAAGAGGAAGAAACTTAGAATATCGTAGCCGATCATGCTTATTTTGGCTGA 556
Query 163222 TTGATCTTCCAGTATGCATCTTTCAACAACTCACGTTC 163259
||||||||||| |||| ||| |||||||| | |||
Sbjct 555 TTGATCTTCCAATATGATAGTTTTAACAACTCTCATTC 518
>seq25757
Length=3733
Score = 116 bits (128), Expect = 4e-21
Identities = 126/164 (77%), Gaps = 6/164 (4%)
Strand=Plus/Plus
Query 163325 CTATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTGACG--CAG-GTG 163381
||||||| |||||||| || |||||||| ||||| ||||| || |||||| ||| ||
Sbjct 3561 CTATGGCTTTCAACCTAAATGGTTTCAATTTCAATCAATCTGTAGTTGACAGTCAGAGTC 3620
Query 163382 GTAAAGTGATTCCTACTTGGGCAGATATCCTTAACAGAGCAGGACTTGGTATGGAAGTTA 163441
|| || ||| |||||| | ||||| || | || ||||||||||||||||
Sbjct 3621 GT---GTAATTAACACTTGGACTGATATATATATACGTGCTAACCTTGGTATGGAAGTTA 3677
Query 163442 TGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCT 163485
|||| || ||||||||||| |||||||| || ||||| ||||||
Sbjct 3678 TGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGCTGCT 3721
>seq31657
Length=14304
Score = 107 bits (118), Expect = 2e-18
Identities = 103/133 (77%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 162915 CGCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCTCTTGG 162974
||| || |||||| |||| || |||||||||| ||| ||||| | |||||||| ||
Sbjct 296 CGCAGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGG 355
Query 162975 TATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGCACAACATCCTAATGCA 163034
|| ||||||||||| || | |||| | | ||||| || || ||||||||||| |||||
Sbjct 356 AATCTCTGGTACTTTCAATTTCATGATTVTATTCCAGGCTGAACACAACATCCTTATGCA 415
Query 163035 CCCCTTCCATATG 163047
||| || || |||
Sbjct 416 CCCATTTCACATG 428
>seq8181
Length=32328
Score = 100 bits (110), Expect = 3e-16
Identities = 189/278 (68%), Gaps = 0/278 (0%)
Strand=Plus/Minus
Query 162982 GGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGCACAACATCCTAATGCACCCCTTC 163041
||||||| || | |||| | | |||| || ||| |||||||||| |||||||| ||
Sbjct 12081 GGTACTTCCAATTTCATGATTCTATTCCTTGCTGAGTACAACATCCTTATGCACCCATTT 12022
Query 163042 CATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCACTCTTTAGTGCTATGCACGGTTCT 163101
|| || | || | || ||||| | || || || || ||| |||||| | |||
Sbjct 12021 CACATCTTAGGCCTAGCTTGTGTAAAAAGCGGCTCCCTATTATGTGTTATGCATGCTTCC 11962
Query 163102 CTTGTTACTTCTTCTCTTATCAGAGAAACTACTGAGCAAGAGTCACAGAACTACGGTTAT 163161
| || |||||| | | ||||| ||||| || || | || || || | |||||
Sbjct 11961 TTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTAC 11902
Query 163162 AAGTTCGGACAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGATACTTTGGTCGC 163221
| || || |||| ||||| || || || || || |||||| || || |||||
Sbjct 11901 AGATTTGGTTAAGAGGAAGAAACATAGAATATCGTAGCTGCTTATTCTTATTTTGGCAAA 11842
Query 163222 TTGATCTTCCAGTATGCATCTTTCAACAACTCACGTTC 163259
|| ||||| || ||||| |||||||||||| ||||
Sbjct 11841 TTAATCTTTCAATATGCTAGTTTCAACAACTCTTGTTC 11804
>seq20218
Length=9351
Score = 91.5 bits (100), Expect = 2e-13
Identities = 74/90 (82%), Gaps = 0/90 (0%)
Strand=Plus/Plus
Query 163396 ACTTGGGCAGATATCCTTAACAGAGCAGGACTTGGTATGGAAGTTATGCACGAGCGTAAT 163455
||||||| |||||| | ||| | || |||||||||||||||||||| || ||||||
Sbjct 2122 ACTTGGGTTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 2181
Query 163456 GCTCACAACTTCCCACTTGACCTTGCTGCT 163485
||||| |||||||| || ||||| ||||||
Sbjct 2182 GCTCATAACTTCCCTCTAGACCTAGCTGCT 2211
>seq46
Length=65133
Score = 91.5 bits (100), Expect = 2e-13
Identities = 139/195 (71%), Gaps = 6/195 (3%)
Strand=Plus/Plus
Query 163264 CACTTCTTCCTTGCTGCATTCCCTGTGGTCTGCATCTGGTTCACTGCAATGGGTGTGTCA 163323
|||||||||| ||||| | || || || | |||||||| || || | ||| |
Sbjct 51964 CACTTCTTCCGAGCTGCTTGGCCCGTAGTAGGTATCTGGTTTACCGCTTTAGGTATCAGC 52023
Query 163324 ACTATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTGA-CGCAGGTGG 163382
|||||| |||| ||| || |||||||| ||||||||||| || ||||| | || |
Sbjct 52024 GCTATGGGTTTCACCCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAGT-G 52082
Query 163383 TAAAGTGATTCCTACTTGGGCAGA----TATCCTTAACAGAGCAGGACTTGGTATGGAAG 163438
| | || ||| |||||||| || |||| | ||| | || |||||||||||||
Sbjct 52083 TCATGTAATTAACACTTGGGCCGATATGTATCATCAACCGTGCTAACCTTGGTATGGAAG 52142
Query 163439 TTATGCACGAGCGTA 163453
||||||| || ||||
Sbjct 52143 TTATGCATGAACGTA 52157
>seq15728
Length=57915
Score = 87.8 bits (96), Expect = 2e-12
Identities = 151/218 (69%), Gaps = 1/218 (0%)
Strand=Plus/Plus
Query 163157 GTTATAAGTTCGGACAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGATACTTTG 163216
|||| | ||| | ||||| ||| | ||||| || ||||| | | |||||| || ||||
Sbjct 13132 GTTACATATTCTGTCAAGAGGAAAAAACTTATAATATTGTAGTCGTTCATGGTTATTTTG 13191
Query 163217 GTCGCTTGATCTTCCAGTATGCATCTTTCAACAACTCACGTTCACTTCACTTCTTCCTTG 163276
| | ||||||| || |||| |||||| |||| ||||| | |||||||||||||
Sbjct 13192 GCTGATTGATCTACCGATATGTTAGTTTCAATGACTCTCGTTCGTTACACTTCTTCCTTG 13251
Query 163277 CTGCATTCCCTGTGGTCTGCATCTGGTTCACTGC-AATGGGTGTGTCAACTATGGCATTC 163335
|||| | | | | || | |||||||| || | | ||| | || ||| |||
Sbjct 13252 CTGCTTGGCATATAGTAGGTATCTGGTTTACCACTTTTAGGTATTAGCACAATGCTTTTC 13311
Query 163336 AACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTGA 163373
|| || || |||||| |||| |||||| | |||||
Sbjct 13312 AATCTAAAAAATTTCAATTTCAGCCAATCTATAGTTGA 13349
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 552787586055600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |