Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21] 42,990 sequences; 724,284,658 total letters Query= NC_019443.1 Length=172879 Score E Sequences producing significant alignments: (Bits) Value seq11014 172 6e-38 seq20193 150 2e-31 seq24530 134 2e-26 seq25757 116 4e-21 seq31657 107 2e-18 seq8181 100 3e-16 seq20218 91.5 2e-13 seq46 91.5 2e-13 seq15728 87.8 2e-12 >seq11014 Length=29319 Score = 172 bits (190), Expect = 6e-38 Identities = 248/352 (70%), Gaps = 0/352 (0%) Strand=Plus/Plus Query 162545 GGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGCAGCAACTTGCTTCATCATTGCAT 162604 |||| ||||| |||||||||||| ||| | | || | || || || ||||| | Sbjct 10082 GGTTTGGTGTTTTGATGATCCCTACCTTATTGACGGCWACTTCTGTATTTATTATTGCCT 10141 Query 162605 TCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTTCACTTC 162664 |||||| || |||||||| || || |||||||| | ||||||||| |||| || || | Sbjct 10142 TCATTGTTGCTCCTCCAGTAGACATTGATGGTATTGGTGAACCTGTTTCAGGGTCTCTAC 10201 Query 162665 TCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTGGTCTTC 162724 | || || |||||||| || || ||||| | |||||| ||| ||||| ||| | | Sbjct 10202 TTTACGGAAACAACATTATTTCCGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTAC 10261 Query 162725 ACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTGGACCTT 162784 | || || || ||||||||||| ||| | ||||||| ||||| | || ||||| |||| Sbjct 10262 ATTTTTACCCAATCTGGGAAGCGGCATCCGTTGATGAATGGTTATTCAACGGTGGTCCTT 10321 Query 162785 TCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGTGGTCGTCAGTGGG 162844 |||| | || | |||||| | | || | | ||| |||| | |||||| Sbjct 10322 ATGAACTAATTGTTCTACACTTCTTACTTGGCGTAGCTTGTTACATGGGTCRTGAGTGGG 10381 Query 162845 AACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATACTCTGC 162896 | ||| | ||| | |||||||| |||||||| ||||||||| || || Sbjct 10382 AGCTTAGCTTCCGTSTRGGTATGCGACCTTGGATTGCTGTTGCATATTCAGC 10433 >seq20193 Length=7469 Score = 150 bits (166), Expect = 2e-31 Identities = 235/338 (70%), Gaps = 0/338 (0%) Strand=Plus/Minus Query 162541 GGTTGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGCAGCAACTTGCTTCATCATT 162600 || ||||| ||||| ||||||||| || ||| | | ||| | | || || ||| Sbjct 6795 GGATGGTTTGGTGTTTTGATGATCTCTACCTTATTGACGGCAACTTYTGTATTTATTATT 6736 Query 162601 GCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTTCA 162660 || |||||||| || |||||||| || || |||||||| | ||||||||| |||| || Sbjct 6735 GCCTTCATTGCTGCTCCTCCAGTAGACATTGATGGTATTCGTGAACCTGTTTCAGGGTCT 6676 Query 162661 CTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTGGT 162720 || || | || |||||||| || || ||||| | |||||| ||| ||||| ||| Sbjct 6675 CTACTTHACGGAAACAACATTATTTCCGGTGCCATTATTCCTACTTCTGCAGCTATAGGT 6616 Query 162721 CTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTGGA 162780 | || || || || ||||||||||| || | ||||||| ||||| || || | ||| Sbjct 6615 TTACATTTTTACCCAATCTGGGAAGCGACATCCGTTGATGAATGGTTATACAACGRTGGT 6556 Query 162781 CCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGTGGTCGTCAG 162840 |||| |||| | || | |||||| | | || | | ||| |||||| || Sbjct 6555 CCTTATGAACTAATTGTTCTACACTTCTTACTTGGCGTAGCTTGTTACATGGGTCGTGAG 6496 Query 162841 TGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGAT 162878 ||||| ||| | || | ||||||| |||||||| Sbjct 6495 TGGGAGCTTAGCTTCCATCTGGGTATGCAACCTTGGAT 6458 >seq24530 Length=26533 Score = 134 bits (148), Expect = 2e-26 Identities = 196/278 (71%), Gaps = 0/278 (0%) Strand=Plus/Minus Query 162982 GGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGCACAACATCCTAATGCACCCCTTC 163041 |||||||| || | |||| | || ||||| || || ||||||||||| |||||||| || Sbjct 795 GGTACTTTCAATTTCATGATTGTATTCCAGGCTGAVCACAACATCCTTATGCACCCATTT 736 Query 163042 CATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCACTCTTTAGTGCTATGCACGGTTCT 163101 || || | || | || |||||| | || || || || ||| ||||||| | ||| Sbjct 735 CACATCTTAGGCCTAGCTGGTGTAAAATGCGGCTCCCTATTCAGTACTATGCATGCTTCA 676 Query 163102 CTTGTTACTTCTTCTCTTATCAGAGAAACTACTGAGCAAGAGTCACAGAACTACGGTTAT 163161 |||| |||||| | |||| || |||| || | | || || || | ||||| Sbjct 675 TTTGTAACTTCTAGTTTTATAAGGGAAAGCACATAAAATGAATCTGCTAATGAAGGTTAC 616 Query 163162 AAGTTCGGACAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGATACTTTGGTCGC 163221 | |||| ||||| ||||| ||||| || || || || | ||||| || ||||| | Sbjct 615 AGATTCGATCAAGAGGAAGAAACTTAGAATATCGTAGCCGATCATGCTTATTTTGGCTGA 556 Query 163222 TTGATCTTCCAGTATGCATCTTTCAACAACTCACGTTC 163259 ||||||||||| |||| ||| |||||||| | ||| Sbjct 555 TTGATCTTCCAATATGATAGTTTTAACAACTCTCATTC 518 >seq25757 Length=3733 Score = 116 bits (128), Expect = 4e-21 Identities = 126/164 (77%), Gaps = 6/164 (4%) Strand=Plus/Plus Query 163325 CTATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTGACG--CAG-GTG 163381 ||||||| |||||||| || |||||||| ||||| ||||| || |||||| ||| || Sbjct 3561 CTATGGCTTTCAACCTAAATGGTTTCAATTTCAATCAATCTGTAGTTGACAGTCAGAGTC 3620 Query 163382 GTAAAGTGATTCCTACTTGGGCAGATATCCTTAACAGAGCAGGACTTGGTATGGAAGTTA 163441 || || ||| |||||| | ||||| || | || |||||||||||||||| Sbjct 3621 GT---GTAATTAACACTTGGACTGATATATATATACGTGCTAACCTTGGTATGGAAGTTA 3677 Query 163442 TGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCT 163485 |||| || ||||||||||| |||||||| || ||||| |||||| Sbjct 3678 TGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGCTGCT 3721 >seq31657 Length=14304 Score = 107 bits (118), Expect = 2e-18 Identities = 103/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 162915 CGCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCTCTTGG 162974 ||| || |||||| |||| || |||||||||| ||| ||||| | |||||||| || Sbjct 296 CGCAGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGG 355 Query 162975 TATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGCACAACATCCTAATGCA 163034 || ||||||||||| || | |||| | | ||||| || || ||||||||||| ||||| Sbjct 356 AATCTCTGGTACTTTCAATTTCATGATTVTATTCCAGGCTGAACACAACATCCTTATGCA 415 Query 163035 CCCCTTCCATATG 163047 ||| || || ||| Sbjct 416 CCCATTTCACATG 428 >seq8181 Length=32328 Score = 100 bits (110), Expect = 3e-16 Identities = 189/278 (68%), Gaps = 0/278 (0%) Strand=Plus/Minus Query 162982 GGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGCACAACATCCTAATGCACCCCTTC 163041 ||||||| || | |||| | | |||| || ||| |||||||||| |||||||| || Sbjct 12081 GGTACTTCCAATTTCATGATTCTATTCCTTGCTGAGTACAACATCCTTATGCACCCATTT 12022 Query 163042 CATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCACTCTTTAGTGCTATGCACGGTTCT 163101 || || | || | || ||||| | || || || || ||| |||||| | ||| Sbjct 12021 CACATCTTAGGCCTAGCTTGTGTAAAAAGCGGCTCCCTATTATGTGTTATGCATGCTTCC 11962 Query 163102 CTTGTTACTTCTTCTCTTATCAGAGAAACTACTGAGCAAGAGTCACAGAACTACGGTTAT 163161 | || |||||| | | ||||| ||||| || || | || || || | ||||| Sbjct 11961 TTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTAC 11902 Query 163162 AAGTTCGGACAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGATACTTTGGTCGC 163221 | || || |||| ||||| || || || || || |||||| || || ||||| Sbjct 11901 AGATTTGGTTAAGAGGAAGAAACATAGAATATCGTAGCTGCTTATTCTTATTTTGGCAAA 11842 Query 163222 TTGATCTTCCAGTATGCATCTTTCAACAACTCACGTTC 163259 || ||||| || ||||| |||||||||||| |||| Sbjct 11841 TTAATCTTTCAATATGCTAGTTTCAACAACTCTTGTTC 11804 >seq20218 Length=9351 Score = 91.5 bits (100), Expect = 2e-13 Identities = 74/90 (82%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 163396 ACTTGGGCAGATATCCTTAACAGAGCAGGACTTGGTATGGAAGTTATGCACGAGCGTAAT 163455 ||||||| |||||| | ||| | || |||||||||||||||||||| || |||||| Sbjct 2122 ACTTGGGTTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 2181 Query 163456 GCTCACAACTTCCCACTTGACCTTGCTGCT 163485 ||||| |||||||| || ||||| |||||| Sbjct 2182 GCTCATAACTTCCCTCTAGACCTAGCTGCT 2211 >seq46 Length=65133 Score = 91.5 bits (100), Expect = 2e-13 Identities = 139/195 (71%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 163264 CACTTCTTCCTTGCTGCATTCCCTGTGGTCTGCATCTGGTTCACTGCAATGGGTGTGTCA 163323 |||||||||| ||||| | || || || | |||||||| || || | ||| | Sbjct 51964 CACTTCTTCCGAGCTGCTTGGCCCGTAGTAGGTATCTGGTTTACCGCTTTAGGTATCAGC 52023 Query 163324 ACTATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTGA-CGCAGGTGG 163382 |||||| |||| ||| || |||||||| ||||||||||| || ||||| | || | Sbjct 52024 GCTATGGGTTTCACCCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAGT-G 52082 Query 163383 TAAAGTGATTCCTACTTGGGCAGA----TATCCTTAACAGAGCAGGACTTGGTATGGAAG 163438 | | || ||| |||||||| || |||| | ||| | || ||||||||||||| Sbjct 52083 TCATGTAATTAACACTTGGGCCGATATGTATCATCAACCGTGCTAACCTTGGTATGGAAG 52142 Query 163439 TTATGCACGAGCGTA 163453 ||||||| || |||| Sbjct 52143 TTATGCATGAACGTA 52157 >seq15728 Length=57915 Score = 87.8 bits (96), Expect = 2e-12 Identities = 151/218 (69%), Gaps = 1/218 (0%) Strand=Plus/Plus Query 163157 GTTATAAGTTCGGACAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGATACTTTG 163216 |||| | ||| | ||||| ||| | ||||| || ||||| | | |||||| || |||| Sbjct 13132 GTTACATATTCTGTCAAGAGGAAAAAACTTATAATATTGTAGTCGTTCATGGTTATTTTG 13191 Query 163217 GTCGCTTGATCTTCCAGTATGCATCTTTCAACAACTCACGTTCACTTCACTTCTTCCTTG 163276 | | ||||||| || |||| |||||| |||| ||||| | ||||||||||||| Sbjct 13192 GCTGATTGATCTACCGATATGTTAGTTTCAATGACTCTCGTTCGTTACACTTCTTCCTTG 13251 Query 163277 CTGCATTCCCTGTGGTCTGCATCTGGTTCACTGC-AATGGGTGTGTCAACTATGGCATTC 163335 |||| | | | | || | |||||||| || | | ||| | || ||| ||| Sbjct 13252 CTGCTTGGCATATAGTAGGTATCTGGTTTACCACTTTTAGGTATTAGCACAATGCTTTTC 13311 Query 163336 AACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTGA 163373 || || || |||||| |||| |||||| | ||||| Sbjct 13312 AATCTAAAAAATTTCAATTTCAGCCAATCTATAGTTGA 13349 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552787586055600