Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21] 42,990 sequences; 724,284,658 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq796 98.7 8e-16 seq545 89.7 4e-13 >seq796 Length=44438 Score = 98.7 bits (108), Expect = 8e-16 Identities = 153/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 28544 TTGTGTAAAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAAC 28603 ||||||| | ||||| |||||||| ||||| | || || || ||||| ||| || Sbjct 18595 TTGTGTACAGATGCAGATATTTGTCAAAACCCTCACTGGAAAGACCATCACCCTTGAGGT 18654 Query 28604 GGAACCTTCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCC 28663 |||| ||||| || | | | | | || || ||| ||||| || || | || Sbjct 18655 GGAAAGCTCAGACACCATTGACAACGTTAAAGCCAAGATCCAGGACAAGGAAGGCATTCC 18714 Query 28664 CGTAGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGC 28723 | ||| || ||||| || |||||||||||||| || | |||||| || | || Sbjct 18715 CCCAGACCAGCAGAGGCTGATCTTTGCGGGCAAGCAGCTTGAAGATGGCCGTACCCTCGC 18774 Query 28724 CGATTATAACATTCAAAAAGAATCTACTCTGCACATGGT 28762 |||||| |||||||||||||| || ||||| ||| |||| Sbjct 18775 CGATTACAACATTCAAAAAGAGTCCACTCTTCACTTGGT 18813 >seq545 Length=31085 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||||||||| || ||||| || || || || ||||| || || |||| Sbjct 2869 ATGCAAATATTTGTCAAGACATTGACAGGGAAGACAATTACTTTGGAGGTTGAGAGTTCA 2928 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | || | || ||| ||| ||||| ||||| | || ||| || Sbjct 2929 GATACCATCGACAATGTTAAAGCAAAGATCCAAGACAAGGAGGGTATTCCTCCAGACCAG 2988 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 |||||| | |||||||| || || ||| | || ||| | || |||| ||||| ||| Sbjct 2989 CAGAGATTGATCTTTGCTGGAAAGCAACTTGAGGATGGAAGGACGTTGGCAGATTACAAC 3048 Query 28734 ATTCAAAAAGAATCTACTCTGCAC 28757 ||||| |||||||| || |||||| Sbjct 3049 ATTCAGAAAGAATCAACCCTGCAC 3072 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425181913143210