Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21]
42,990 sequences; 724,284,658 total letters
Query= NC_019945.1
Length=132978
Score E
Sequences producing significant alignments: (Bits) Value
seq796 98.7 8e-16
seq545 89.7 4e-13
>seq796
Length=44438
Score = 98.7 bits (108), Expect = 8e-16
Identities = 153/219 (70%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 28544 TTGTGTAAAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAAC 28603
||||||| | ||||| |||||||| ||||| | || || || ||||| ||| ||
Sbjct 18595 TTGTGTACAGATGCAGATATTTGTCAAAACCCTCACTGGAAAGACCATCACCCTTGAGGT 18654
Query 28604 GGAACCTTCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCC 28663
|||| ||||| || | | | | | || || ||| ||||| || || | ||
Sbjct 18655 GGAAAGCTCAGACACCATTGACAACGTTAAAGCCAAGATCCAGGACAAGGAAGGCATTCC 18714
Query 28664 CGTAGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGC 28723
| ||| || ||||| || |||||||||||||| || | |||||| || | ||
Sbjct 18715 CCCAGACCAGCAGAGGCTGATCTTTGCGGGCAAGCAGCTTGAAGATGGCCGTACCCTCGC 18774
Query 28724 CGATTATAACATTCAAAAAGAATCTACTCTGCACATGGT 28762
|||||| |||||||||||||| || ||||| ||| ||||
Sbjct 18775 CGATTACAACATTCAAAAAGAGTCCACTCTTCACTTGGT 18813
>seq545
Length=31085
Score = 89.7 bits (98), Expect = 4e-13
Identities = 142/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613
|||||||||||||| || ||||| || || || || ||||| || || ||||
Sbjct 2869 ATGCAAATATTTGTCAAGACATTGACAGGGAAGACAATTACTTTGGAGGTTGAGAGTTCA 2928
Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673
|| || | | | || | || ||| ||| ||||| ||||| | || ||| ||
Sbjct 2929 GATACCATCGACAATGTTAAAGCAAAGATCCAAGACAAGGAGGGTATTCCTCCAGACCAG 2988
Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733
|||||| | |||||||| || || ||| | || ||| | || |||| ||||| |||
Sbjct 2989 CAGAGATTGATCTTTGCTGGAAAGCAACTTGAGGATGGAAGGACGTTGGCAGATTACAAC 3048
Query 28734 ATTCAAAAAGAATCTACTCTGCAC 28757
||||| |||||||| || ||||||
Sbjct 3049 ATTCAGAAAGAATCAACCCTGCAC 3072
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 425181913143210
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |