Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21]
42,990 sequences; 724,284,658 total letters
Query= NC_020835.1
Length=47325
Score E
Sequences producing significant alignments: (Bits) Value
seq11014 214 5e-51
seq20193 194 5e-45
seq31657 118 3e-22
seq24530 114 4e-21
seq25757 87.8 5e-13
seq20218 87.8 5e-13
>seq11014
Length=29319
Score = 214 bits (236), Expect = 5e-51
Identities = 287/401 (72%), Gaps = 1/401 (0%)
Strand=Plus/Minus
Query 18390 AGAAATACTGAGAAGGCAGCTGCTACTGGTGCGGAATAAGCAACACAAATCCACGGGCGC 18449
||||| |||| | ||| |||| || | || ||||| |||||| |||||| || |||
Sbjct 10462 AGAAA-ACTGCGGTAGCAACTGCAACAAGAGCTGAATATGCAACAGCAATCCAAGGTCGC 10404
Query 18450 ATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCATGTAAGCTGCGATGCCGATGAGA 18509
||||| | | | ||||| ||||| | | ||||||||| || | ||| | |
Sbjct 10403 ATACCYASACGGAAGCTAAGCTCCCACTCAYGACCCATGTAACAAGCTACGCCAAGTAAG 10344
Query 18510 AAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCA 18569
||||| | ||||| |||| ||| || || ||||| ||||||| || || | || |||
Sbjct 10343 AAGTGTAGAACAATTAGTTCATAAGGACCACCGTTGAATAACCATTCATCAACGGATGCC 10284
Query 18570 GCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCT 18629
||||||||||||||||| || || | ||| || || ||| | || | || || ||
Sbjct 10283 GCTTCCCAGATTGGGTAAAAATGTAAACCTATAGCTGCAGAAGTAGGAATAATGGCACCG 10224
Query 18630 GATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGACAGGCTCACGAATACCATCTATG 18689
|| || ||||||||||| || |||| | ||||| ||||| |||| ||||||||| |||
Sbjct 10223 GAAATAATGTTGTTTCCGTAAAGTAGAGACCCTGAAACAGGTTCACCAATACCATCAATG 10164
Query 18690 TCAACGGGAGGAGCAGCAACAAATGCAATCAAAAATGCTGTAGCTGCGGTTAAAAGTGCA 18749
|| || ||||||||| ||| || ||||| | |||| | | || || || || | | |
Sbjct 10163 TCTACTGGAGGAGCAACAATGAAGGCAATAATAAATACAGAAGTWGCCGTCAATAAGGTA 10104
Query 18750 GGGATCATAAGTACCCCAAACCACCCCACGTAGAGGCGGTT 18790
|||||||| | || ||||||| || | ||| || |||||
Sbjct 10103 GGGATCATCAAAACACCAAACCGTCCAATGTAAAGACGGTT 10063
>seq20193
Length=7469
Score = 194 bits (214), Expect = 5e-45
Identities = 267/374 (71%), Gaps = 1/374 (0%)
Strand=Plus/Plus
Query 18437 AATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCATGTAAGCTGC 18496
|||||| || ||||||| || | ||||| ||||| | || ||||||||| ||
Sbjct 6457 AATCCAAGGTTGCATACCCAGATGGAAGCTAAGCTCCCACTCACGACCCATGTAACAAGC 6516
Query 18497 GATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACCACTC 18556
| ||| | | ||||| | ||||| |||| ||| || || |||| |||||||| ||
Sbjct 6517 TACGCCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCAYCGTTGTATAACCATTC 6576
Query 18557 GTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGG 18616
|| | || || ||||||||||||||||| || || | ||| || || ||| | ||
Sbjct 6577 ATCAACGGATGTCGCTTCCCAGATTGGGTAAAAATGTAAACCTATAGCTGCAGAAGTAGG 6636
Query 18617 GACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGACAGGCTCACG 18676
| || || || || || ||||||||||| | |||| | ||||| ||||| |||||
Sbjct 6637 AATAATGGCACCGGAAATAATGTTGTTTCCGTDAAGTAGAGACCCTGAAACAGGTTCACG 6696
Query 18677 AATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATCAAAAATGCTGTAGCTGC 18736
||||||||| ||||| || ||||||||||||| || ||||| | |||| | || |||
Sbjct 6697 AATACCATCAATGTCTACTGGAGGAGCAGCAATGAAGGCAATAATAAATACARAAGTTGC 6756
Query 18737 GGTTAAAAGTGCAGGGATCATAAGTACCCCAAACCACCCCACGTAGAGGCGGTTGTTTGT 18796
|| || | | || |||||| | || |||||||| || | ||| || ||||| | ||
Sbjct 6757 CGTCAATAAGGTAGAGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTT-TCAGT 6815
Query 18797 ACTCGTAACCCAGT 18810
|| || | |||||
Sbjct 6816 GCTAGTTATCCAGT 6829
>seq31657
Length=14304
Score = 118 bits (130), Expect = 3e-22
Identities = 116/148 (78%), Gaps = 2/148 (1%)
Strand=Plus/Minus
Query 18269 CATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAATACGAACATGAAATTGAA 18328
||| || || || ||||||||||| |||||||| || ||||||| | ||||||||||||
Sbjct 428 CATGTGAAATGGGTGCATAAGGATGTTGTGTTCAGCCTGGAATABAATCATGAAATTGAA 369
Query 18329 AGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGATA-AA 18387
|||||| || || ||||||||||||||||| ||||| ||||| || | || || |
Sbjct 368 AGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCGATTGGGTAGAT 309
Query 18388 CGAGAAATACTGAGAAGGCAGCTGCTAC 18415
| ||||| |||| | |||||||| ||
Sbjct 308 CAAGAAA-ACTGCGGTAGCAGCTGCAAC 282
>seq24530
Length=26533
Score = 114 bits (126), Expect = 4e-21
Identities = 187/270 (69%), Gaps = 0/270 (0%)
Strand=Plus/Plus
Query 18066 TTGTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATA 18125
|||||||| ||| |||| |||||||| | || ||||| || ||||| | || || |||
Sbjct 527 TTGTTAAAACTATCATATTGGAAGATCAATCAGCCAAAATAAGCATGATCGGCTACGATA 586
Query 18126 TTATACGTCTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTC 18185
|| || || ||||| ||||| | ||| | || || | || ||| ||| | ||
Sbjct 587 TTCTAAGTTTCTTCCTCTTGATCGAATCTGTAACCTTCATTAGCAGATTCATTTTATGTG 646
Query 18186 GTTTCTCTAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCA 18245
|||| || |||| ||||| |||| | ||||||| | ||||| | ||
Sbjct 647 CTTTCCCTTATAAAACTAGAAGTTACAAATGAAGCATGCATAGTACTGAATAGGGAGCCG 706
Query 18246 CCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCT 18305
| ||| || || | || | || || || || ||||||||||| ||||| || ||
Sbjct 707 CATTTTACACCAGCTAGGCCTAAGATGTGAAATGGGTGCATAAGGATGTTGTGBTCAGCC 766
Query 18306 TGGAATACGAACATGAAATTGAAAGTACCG 18335
|||||||| | |||||||||||||||||||
Sbjct 767 TGGAATACAATCATGAAATTGAAAGTACCG 796
>seq25757
Length=3733
Score = 87.8 bits (96), Expect = 5e-13
Identities = 120/165 (73%), Gaps = 2/165 (1%)
Strand=Plus/Minus
Query 17828 GATTGAAGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCC 17887
||| | ||||| ||||| |||||||||||||||||||| || ||||||||||| | ||
Sbjct 3724 GATAGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACC 3665
Query 17888 AAGGTTAGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCTCCAGCTG-CTA 17946
||||||||| | | || |||| ||| || | || | ||| ||| | |
Sbjct 3664 AAGGTTAGCACGTATATATATATCAGTCCAAGTGTTAATTACACG-ACTCTGACTGTCAA 3606
Query 17947 CAATGGATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAG 17991
| | ||||| ||||| ||||| ||||| || || ||||||||||
Sbjct 3605 CTACAGATTGATTGAAATTGAAACCATTTAGGTTGAAAGCCATAG 3561
>seq20218
Length=9351
Score = 87.8 bits (96), Expect = 5e-13
Identities = 75/93 (81%), Gaps = 0/93 (0%)
Strand=Plus/Minus
Query 17828 GATTGAAGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCC 17887
||| | ||||| ||||| |||||||||||||||||||| || ||||||||||| | ||
Sbjct 2214 GATAGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACC 2155
Query 17888 AAGGTTAGCTCTGTTGAGTACGTCAGCCCATGT 17920
||||||||| | ||||| | ||| |||| ||
Sbjct 2154 AAGGTTAGCACGGTTGATGATATCAACCCAAGT 2122
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 151241151011060
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |