Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21] 42,990 sequences; 724,284,658 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq11014 214 5e-51 seq20193 194 5e-45 seq31657 118 3e-22 seq24530 114 4e-21 seq25757 87.8 5e-13 seq20218 87.8 5e-13 >seq11014 Length=29319 Score = 214 bits (236), Expect = 5e-51 Identities = 287/401 (72%), Gaps = 1/401 (0%) Strand=Plus/Minus Query 18390 AGAAATACTGAGAAGGCAGCTGCTACTGGTGCGGAATAAGCAACACAAATCCACGGGCGC 18449 ||||| |||| | ||| |||| || | || ||||| |||||| |||||| || ||| Sbjct 10462 AGAAA-ACTGCGGTAGCAACTGCAACAAGAGCTGAATATGCAACAGCAATCCAAGGTCGC 10404 Query 18450 ATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCATGTAAGCTGCGATGCCGATGAGA 18509 ||||| | | | ||||| ||||| | | ||||||||| || | ||| | | Sbjct 10403 ATACCYASACGGAAGCTAAGCTCCCACTCAYGACCCATGTAACAAGCTACGCCAAGTAAG 10344 Query 18510 AAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCA 18569 ||||| | ||||| |||| ||| || || ||||| ||||||| || || | || ||| Sbjct 10343 AAGTGTAGAACAATTAGTTCATAAGGACCACCGTTGAATAACCATTCATCAACGGATGCC 10284 Query 18570 GCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCT 18629 ||||||||||||||||| || || | ||| || || ||| | || | || || || Sbjct 10283 GCTTCCCAGATTGGGTAAAAATGTAAACCTATAGCTGCAGAAGTAGGAATAATGGCACCG 10224 Query 18630 GATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGACAGGCTCACGAATACCATCTATG 18689 || || ||||||||||| || |||| | ||||| ||||| |||| ||||||||| ||| Sbjct 10223 GAAATAATGTTGTTTCCGTAAAGTAGAGACCCTGAAACAGGTTCACCAATACCATCAATG 10164 Query 18690 TCAACGGGAGGAGCAGCAACAAATGCAATCAAAAATGCTGTAGCTGCGGTTAAAAGTGCA 18749 || || ||||||||| ||| || ||||| | |||| | | || || || || | | | Sbjct 10163 TCTACTGGAGGAGCAACAATGAAGGCAATAATAAATACAGAAGTWGCCGTCAATAAGGTA 10104 Query 18750 GGGATCATAAGTACCCCAAACCACCCCACGTAGAGGCGGTT 18790 |||||||| | || ||||||| || | ||| || ||||| Sbjct 10103 GGGATCATCAAAACACCAAACCGTCCAATGTAAAGACGGTT 10063 >seq20193 Length=7469 Score = 194 bits (214), Expect = 5e-45 Identities = 267/374 (71%), Gaps = 1/374 (0%) Strand=Plus/Plus Query 18437 AATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCATGTAAGCTGC 18496 |||||| || ||||||| || | ||||| ||||| | || ||||||||| || Sbjct 6457 AATCCAAGGTTGCATACCCAGATGGAAGCTAAGCTCCCACTCACGACCCATGTAACAAGC 6516 Query 18497 GATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACCACTC 18556 | ||| | | ||||| | ||||| |||| ||| || || |||| |||||||| || Sbjct 6517 TACGCCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCAYCGTTGTATAACCATTC 6576 Query 18557 GTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGG 18616 || | || || ||||||||||||||||| || || | ||| || || ||| | || Sbjct 6577 ATCAACGGATGTCGCTTCCCAGATTGGGTAAAAATGTAAACCTATAGCTGCAGAAGTAGG 6636 Query 18617 GACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGACAGGCTCACG 18676 | || || || || || ||||||||||| | |||| | ||||| ||||| ||||| Sbjct 6637 AATAATGGCACCGGAAATAATGTTGTTTCCGTDAAGTAGAGACCCTGAAACAGGTTCACG 6696 Query 18677 AATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATCAAAAATGCTGTAGCTGC 18736 ||||||||| ||||| || ||||||||||||| || ||||| | |||| | || ||| Sbjct 6697 AATACCATCAATGTCTACTGGAGGAGCAGCAATGAAGGCAATAATAAATACARAAGTTGC 6756 Query 18737 GGTTAAAAGTGCAGGGATCATAAGTACCCCAAACCACCCCACGTAGAGGCGGTTGTTTGT 18796 || || | | || |||||| | || |||||||| || | ||| || ||||| | || Sbjct 6757 CGTCAATAAGGTAGAGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTT-TCAGT 6815 Query 18797 ACTCGTAACCCAGT 18810 || || | ||||| Sbjct 6816 GCTAGTTATCCAGT 6829 >seq31657 Length=14304 Score = 118 bits (130), Expect = 3e-22 Identities = 116/148 (78%), Gaps = 2/148 (1%) Strand=Plus/Minus Query 18269 CATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAATACGAACATGAAATTGAA 18328 ||| || || || ||||||||||| |||||||| || ||||||| | |||||||||||| Sbjct 428 CATGTGAAATGGGTGCATAAGGATGTTGTGTTCAGCCTGGAATABAATCATGAAATTGAA 369 Query 18329 AGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGATA-AA 18387 |||||| || || ||||||||||||||||| ||||| ||||| || | || || | Sbjct 368 AGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCGATTGGGTAGAT 309 Query 18388 CGAGAAATACTGAGAAGGCAGCTGCTAC 18415 | ||||| |||| | |||||||| || Sbjct 308 CAAGAAA-ACTGCGGTAGCAGCTGCAAC 282 >seq24530 Length=26533 Score = 114 bits (126), Expect = 4e-21 Identities = 187/270 (69%), Gaps = 0/270 (0%) Strand=Plus/Plus Query 18066 TTGTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATA 18125 |||||||| ||| |||| |||||||| | || ||||| || ||||| | || || ||| Sbjct 527 TTGTTAAAACTATCATATTGGAAGATCAATCAGCCAAAATAAGCATGATCGGCTACGATA 586 Query 18126 TTATACGTCTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTC 18185 || || || ||||| ||||| | ||| | || || | || ||| ||| | || Sbjct 587 TTCTAAGTTTCTTCCTCTTGATCGAATCTGTAACCTTCATTAGCAGATTCATTTTATGTG 646 Query 18186 GTTTCTCTAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCA 18245 |||| || |||| ||||| |||| | ||||||| | ||||| | || Sbjct 647 CTTTCCCTTATAAAACTAGAAGTTACAAATGAAGCATGCATAGTACTGAATAGGGAGCCG 706 Query 18246 CCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCT 18305 | ||| || || | || | || || || || ||||||||||| ||||| || || Sbjct 707 CATTTTACACCAGCTAGGCCTAAGATGTGAAATGGGTGCATAAGGATGTTGTGBTCAGCC 766 Query 18306 TGGAATACGAACATGAAATTGAAAGTACCG 18335 |||||||| | ||||||||||||||||||| Sbjct 767 TGGAATACAATCATGAAATTGAAAGTACCG 796 >seq25757 Length=3733 Score = 87.8 bits (96), Expect = 5e-13 Identities = 120/165 (73%), Gaps = 2/165 (1%) Strand=Plus/Minus Query 17828 GATTGAAGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCC 17887 ||| | ||||| ||||| |||||||||||||||||||| || ||||||||||| | || Sbjct 3724 GATAGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACC 3665 Query 17888 AAGGTTAGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCTCCAGCTG-CTA 17946 ||||||||| | | || |||| ||| || | || | ||| ||| | | Sbjct 3664 AAGGTTAGCACGTATATATATATCAGTCCAAGTGTTAATTACACG-ACTCTGACTGTCAA 3606 Query 17947 CAATGGATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAG 17991 | | ||||| ||||| ||||| ||||| || || |||||||||| Sbjct 3605 CTACAGATTGATTGAAATTGAAACCATTTAGGTTGAAAGCCATAG 3561 >seq20218 Length=9351 Score = 87.8 bits (96), Expect = 5e-13 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 17828 GATTGAAGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCC 17887 ||| | ||||| ||||| |||||||||||||||||||| || ||||||||||| | || Sbjct 2214 GATAGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACC 2155 Query 17888 AAGGTTAGCTCTGTTGAGTACGTCAGCCCATGT 17920 ||||||||| | ||||| | ||| |||| || Sbjct 2154 AAGGTTAGCACGGTTGATGATATCAACCCAAGT 2122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151241151011060