Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21]
42,990 sequences; 724,284,658 total letters
Query= NC_020838.1
Length=45728
Score E
Sequences producing significant alignments: (Bits) Value
seq11014 168 2e-37
seq20193 141 3e-29
seq15728 98.7 3e-16
seq31657 91.5 4e-14
seq46 91.5 4e-14
seq25757 86.0 2e-12
>seq11014
Length=29319
Score = 168 bits (186), Expect = 2e-37
Identities = 281/406 (69%), Gaps = 2/406 (0%)
Strand=Plus/Minus
Query 22028 GAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCAACAAAGATCCAGGGCCTCAT 22087
||| || || || ||| | || ||| |||| || || |||||| ||||| || | |||
Sbjct 10461 GAAAACTGCGGTAGCAACTGCAACAAGAGCTGAATATGCAACAGCAATCCAAGGTCGCAT 10402
Query 22088 CCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCCATGTAAGCAAAGACGCCAATGAGGAA 22147
|| | || ||||||| |||||||| | ||||||||| | ||||||| | |||
Sbjct 10401 ACCYASACGGAAGCTAAGCTCCCACTCAYGACCCATGTAACAAGCTACGCCAAGTAAGAA 10342
Query 22148 GTGGAATACGGTGAGTTGGAATGGACCGCCGTTGTACAGCCATTCATCAAGTGTAGCAGC 22207
||| | || | |||| | ||||| |||||| | | ||||||||||| | || ||
Sbjct 10341 GTGTAGAACAATTAGTTCATAAGGACCACCGTTGAATAACCATTCATCAACGGATGCCGC 10282
Query 22208 TTCCCAAATTGGGTAGAAGTGTAGTCCGATGGCATTACTGCTCGGAACGACGGCTCCTGA 22267
|||||| |||||||| || |||| || || || | | |||| | ||| || ||
Sbjct 10281 TTCCCAGATTGGGTAAAAATGTAAACCTATAGCTGCAGAAGTAGGAATAATGGCACCGGA 10222
Query 22268 TATGATGTTGTTACCATACAACAGGGAGCCAGCGACGGGTTCTCGGATTCCATCGATGTC 22327
|| |||||||| || || | || || || | || ||||| | || ||||| |||||
Sbjct 10221 AATAATGTTGTTTCCGTAAAGTAGAGACCCTGAAACAGGTTCACCAATACCATCAATGTC 10162
Query 22328 AACAGGTGGTGCGCCAACAAAGGCGATAATAAAACAAGTTGTAGCGG-CAAGGAGGCACG 22386
|| || || || ||| ||||| |||||||| || || || | ||| ||| | |
Sbjct 10161 TACTGGAGGAGCAACAATGAAGGCAATAATAAATACAGAAGTWGCCGTCAATAAGGTAGG 10102
Query 22387 GAATCATAAGGACTCCGAACCATCCTACATAAAGACGGTTATTAGT 22432
|| |||| | || || |||| ||| | ||||||||||| | |||
Sbjct 10101 GA-TCATCAAAACACCAAACCGTCCAATGTAAAGACGGTTTTCAGT 10057
>seq20193
Length=7469
Score = 141 bits (156), Expect = 3e-29
Identities = 231/331 (70%), Gaps = 6/331 (2%)
Strand=Plus/Plus
Query 22099 AGCTAAGTTCCCACTCTCGTCCCATGTAAGCAAAGACGCCAATGAGGAAGTGGAATACGG 22158
||||||| |||||||| || ||||||||| | ||||||| | |||||| | ||
Sbjct 6483 AGCTAAGCTCCCACTCACGACCCATGTAACAAGCTACGCCAAGTAAGAAGTGTAGAACAA 6542
Query 22159 TGAGTTGGAATGGACCGCCGTTGTACAGCCATTCATCAAGTGTAGCAGCTTCCCAAATTG 22218
| |||| | ||||| ||||||| | ||||||||||| | | |||||||| ||||
Sbjct 6543 TTAGTTCATAAGGACCAYCGTTGTATAACCATTCATCAACGGATGTCGCTTCCCAGATTG 6602
Query 22219 GGTAGAAGTGTAGTCCGATGGCATTACTGCTCGGAACGACGGCTCCTGATATGATGTTGT 22278
|||| || |||| || || || | | |||| | ||| || || || |||||||
Sbjct 6603 GGTAAAAATGTAAACCTATAGCTGCAGAAGTAGGAATAATGGCACCGGAAATAATGTTGT 6662
Query 22279 TACCATACAACAGGGAGCCAGCGACGGGTTCTCGGATTCCATCGATGTCAACAGGTGGTG 22338
| || | | || || || | || ||||| || || ||||| ||||| || || || |
Sbjct 6663 TTCCGTDAAGTAGAGACCCTGAAACAGGTTCACGAATACCATCAATGTCTACTGGAGGAG 6722
Query 22339 CGCCAACAAAGGCGATAATAAA---ACAAGTTGTAGCGGCAAGGAGGCACGGAATCATAA 22395
| ||| ||||| |||||||| | |||||| || ||| ||| | | ||||| |
Sbjct 6723 CAGCAATGAAGGCAATAATAAATACARAAGTTG--CCGTCAATAAGGTA-GAGATCATCA 6779
Query 22396 GGACTCCGAACCATCCTACATAAAGACGGTT 22426
|| || |||||||| | |||||||||||
Sbjct 6780 AAACACCAAACCATCCAATGTAAAGACGGTT 6810
>seq15728
Length=57915
Score = 98.7 bits (108), Expect = 3e-16
Identities = 111/149 (74%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 21647 AAACCAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATT 21706
|||||| |||||||| | | |||| |||||||| ||||| || | ||| || | |||
Sbjct 13280 AAACCAGATACCTACTATATGCCAAGCAGCAAGGAAGAAGTGTAACGAACGAGAGTCATT 13221
Query 21707 AAAGCTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTA 21766
|| ||| ||||| || |||| | | |||||||| || ||| | | |||||||| ||
Sbjct 13220 GAAACTAACATATCGGTAGATCAATCAGCCAAAATAACCATGAACGACTACAATATTATA 13161
Query 21767 AGTCTCTTCCTCTTGACCAAACTTGTAAC 21795
||| | ||||||||||| || ||||||
Sbjct 13160 AGTTTTTTCCTCTTGACAGAATATGTAAC 13132
>seq31657
Length=14304
Score = 91.5 bits (100), Expect = 4e-14
Identities = 108/147 (73%), Gaps = 0/147 (0%)
Strand=Plus/Minus
Query 21905 CATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACACCAGCATGTAGTTGAA 21964
||||||||| || |||||||| || ||||| ||||||||||| | | |||| | |||||
Sbjct 428 CATGTGAAATGGGTGCATAAGGATGTTGTGTTCAGCCTGGAATABAATCATGAAATTGAA 369
Query 21965 GGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGCCCTGTCCAAACGGATAAAC 22024
|| || || || || | |||||| ||||||||||| || || || | || || |
Sbjct 368 AGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCGATTGGGTAGAT 309
Query 22025 AAGGAACACAGCAGTCGCAGCGGCGAC 22051
| ||| || || || ||||| || ||
Sbjct 308 CAAGAAAACTGCGGTAGCAGCTGCAAC 282
>seq46
Length=65133
Score = 91.5 bits (100), Expect = 4e-14
Identities = 139/194 (72%), Gaps = 8/194 (4%)
Strand=Plus/Minus
Query 21501 CGCTCATGCATCACCTCAAAGCCAAGGTTGGCACGGTTAA-GA---ATGTCAGCCCAGGT 21556
|| |||||||| || || | |||||||| |||||||| | || || || ||||| ||
Sbjct 52155 CGTTCATGCATAACTTCCATACCAAGGTTAGCACGGTTGATGATACATATCGGCCCAAGT 52096
Query 21557 GTTGATCACCTGTCCATCAGCAGCTAGCAGAGATTGGTTAAAGTTGAAACCATTCAAGTT 21616
||| || || || | | | | | | | ||||||||| || ||||||||||| | | |
Sbjct 52095 GTTAATTACATGACACTGACTATCAACTACAGATTGGTTGAAATTGAAACCATTTAGGGT 52036
Query 21617 GAAAGCCAT--GGTAGACACGCCAAGCGCAGCAAACCAAATACCTACAACAGGCCAGGCA 21674
|||| |||| | || || ||||| | |||||| |||||||| || ||||| |||
Sbjct 52035 GAAACCCATAGCGCTGATACCTAAAGCG--GTAAACCAGATACCTACTACGGGCCAAGCA 51978
Query 21675 GCAAGAAAGAAATG 21688
|| | ||||| ||
Sbjct 51977 GCTCGGAAGAAGTG 51964
>seq25757
Length=3733
Score = 86.0 bits (94), Expect = 2e-12
Identities = 112/155 (72%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 21471 GCAAGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTG 21530
|| ||||| || |||||||| || || || || |||||||| || || | ||||||||
Sbjct 3717 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 3658
Query 21531 GCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGAGAT 21590
||||| || || |||| ||| ||||| || || | | | | | | | ||||
Sbjct 3657 GCACGTATATATATATCAGTCCAAGTGTTAATTACACGACTCTGACTGTCAACTACAGAT 3598
Query 21591 TGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCAT 21625
|| || || ||||||||||| | ||||||||||||
Sbjct 3597 TGATTGAAATTGAAACCATTTAGGTTGAAAGCCAT 3563
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 146133359902200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |