Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21] 42,990 sequences; 724,284,658 total letters Query= NC_020838.1 Length=45728 Score E Sequences producing significant alignments: (Bits) Value seq11014 168 2e-37 seq20193 141 3e-29 seq15728 98.7 3e-16 seq31657 91.5 4e-14 seq46 91.5 4e-14 seq25757 86.0 2e-12 >seq11014 Length=29319 Score = 168 bits (186), Expect = 2e-37 Identities = 281/406 (69%), Gaps = 2/406 (0%) Strand=Plus/Minus Query 22028 GAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCAACAAAGATCCAGGGCCTCAT 22087 ||| || || || ||| | || ||| |||| || || |||||| ||||| || | ||| Sbjct 10461 GAAAACTGCGGTAGCAACTGCAACAAGAGCTGAATATGCAACAGCAATCCAAGGTCGCAT 10402 Query 22088 CCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCCATGTAAGCAAAGACGCCAATGAGGAA 22147 || | || ||||||| |||||||| | ||||||||| | ||||||| | ||| Sbjct 10401 ACCYASACGGAAGCTAAGCTCCCACTCAYGACCCATGTAACAAGCTACGCCAAGTAAGAA 10342 Query 22148 GTGGAATACGGTGAGTTGGAATGGACCGCCGTTGTACAGCCATTCATCAAGTGTAGCAGC 22207 ||| | || | |||| | ||||| |||||| | | ||||||||||| | || || Sbjct 10341 GTGTAGAACAATTAGTTCATAAGGACCACCGTTGAATAACCATTCATCAACGGATGCCGC 10282 Query 22208 TTCCCAAATTGGGTAGAAGTGTAGTCCGATGGCATTACTGCTCGGAACGACGGCTCCTGA 22267 |||||| |||||||| || |||| || || || | | |||| | ||| || || Sbjct 10281 TTCCCAGATTGGGTAAAAATGTAAACCTATAGCTGCAGAAGTAGGAATAATGGCACCGGA 10222 Query 22268 TATGATGTTGTTACCATACAACAGGGAGCCAGCGACGGGTTCTCGGATTCCATCGATGTC 22327 || |||||||| || || | || || || | || ||||| | || ||||| ||||| Sbjct 10221 AATAATGTTGTTTCCGTAAAGTAGAGACCCTGAAACAGGTTCACCAATACCATCAATGTC 10162 Query 22328 AACAGGTGGTGCGCCAACAAAGGCGATAATAAAACAAGTTGTAGCGG-CAAGGAGGCACG 22386 || || || || ||| ||||| |||||||| || || || | ||| ||| | | Sbjct 10161 TACTGGAGGAGCAACAATGAAGGCAATAATAAATACAGAAGTWGCCGTCAATAAGGTAGG 10102 Query 22387 GAATCATAAGGACTCCGAACCATCCTACATAAAGACGGTTATTAGT 22432 || |||| | || || |||| ||| | ||||||||||| | ||| Sbjct 10101 GA-TCATCAAAACACCAAACCGTCCAATGTAAAGACGGTTTTCAGT 10057 >seq20193 Length=7469 Score = 141 bits (156), Expect = 3e-29 Identities = 231/331 (70%), Gaps = 6/331 (2%) Strand=Plus/Plus Query 22099 AGCTAAGTTCCCACTCTCGTCCCATGTAAGCAAAGACGCCAATGAGGAAGTGGAATACGG 22158 ||||||| |||||||| || ||||||||| | ||||||| | |||||| | || Sbjct 6483 AGCTAAGCTCCCACTCACGACCCATGTAACAAGCTACGCCAAGTAAGAAGTGTAGAACAA 6542 Query 22159 TGAGTTGGAATGGACCGCCGTTGTACAGCCATTCATCAAGTGTAGCAGCTTCCCAAATTG 22218 | |||| | ||||| ||||||| | ||||||||||| | | |||||||| |||| Sbjct 6543 TTAGTTCATAAGGACCAYCGTTGTATAACCATTCATCAACGGATGTCGCTTCCCAGATTG 6602 Query 22219 GGTAGAAGTGTAGTCCGATGGCATTACTGCTCGGAACGACGGCTCCTGATATGATGTTGT 22278 |||| || |||| || || || | | |||| | ||| || || || ||||||| Sbjct 6603 GGTAAAAATGTAAACCTATAGCTGCAGAAGTAGGAATAATGGCACCGGAAATAATGTTGT 6662 Query 22279 TACCATACAACAGGGAGCCAGCGACGGGTTCTCGGATTCCATCGATGTCAACAGGTGGTG 22338 | || | | || || || | || ||||| || || ||||| ||||| || || || | Sbjct 6663 TTCCGTDAAGTAGAGACCCTGAAACAGGTTCACGAATACCATCAATGTCTACTGGAGGAG 6722 Query 22339 CGCCAACAAAGGCGATAATAAA---ACAAGTTGTAGCGGCAAGGAGGCACGGAATCATAA 22395 | ||| ||||| |||||||| | |||||| || ||| ||| | | ||||| | Sbjct 6723 CAGCAATGAAGGCAATAATAAATACARAAGTTG--CCGTCAATAAGGTA-GAGATCATCA 6779 Query 22396 GGACTCCGAACCATCCTACATAAAGACGGTT 22426 || || |||||||| | ||||||||||| Sbjct 6780 AAACACCAAACCATCCAATGTAAAGACGGTT 6810 >seq15728 Length=57915 Score = 98.7 bits (108), Expect = 3e-16 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 21647 AAACCAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATT 21706 |||||| |||||||| | | |||| |||||||| ||||| || | ||| || | ||| Sbjct 13280 AAACCAGATACCTACTATATGCCAAGCAGCAAGGAAGAAGTGTAACGAACGAGAGTCATT 13221 Query 21707 AAAGCTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTA 21766 || ||| ||||| || |||| | | |||||||| || ||| | | |||||||| || Sbjct 13220 GAAACTAACATATCGGTAGATCAATCAGCCAAAATAACCATGAACGACTACAATATTATA 13161 Query 21767 AGTCTCTTCCTCTTGACCAAACTTGTAAC 21795 ||| | ||||||||||| || |||||| Sbjct 13160 AGTTTTTTCCTCTTGACAGAATATGTAAC 13132 >seq31657 Length=14304 Score = 91.5 bits (100), Expect = 4e-14 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 21905 CATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACACCAGCATGTAGTTGAA 21964 ||||||||| || |||||||| || ||||| ||||||||||| | | |||| | ||||| Sbjct 428 CATGTGAAATGGGTGCATAAGGATGTTGTGTTCAGCCTGGAATABAATCATGAAATTGAA 369 Query 21965 GGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGCCCTGTCCAAACGGATAAAC 22024 || || || || || | |||||| ||||||||||| || || || | || || | Sbjct 368 AGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCGATTGGGTAGAT 309 Query 22025 AAGGAACACAGCAGTCGCAGCGGCGAC 22051 | ||| || || || ||||| || || Sbjct 308 CAAGAAAACTGCGGTAGCAGCTGCAAC 282 >seq46 Length=65133 Score = 91.5 bits (100), Expect = 4e-14 Identities = 139/194 (72%), Gaps = 8/194 (4%) Strand=Plus/Minus Query 21501 CGCTCATGCATCACCTCAAAGCCAAGGTTGGCACGGTTAA-GA---ATGTCAGCCCAGGT 21556 || |||||||| || || | |||||||| |||||||| | || || || ||||| || Sbjct 52155 CGTTCATGCATAACTTCCATACCAAGGTTAGCACGGTTGATGATACATATCGGCCCAAGT 52096 Query 21557 GTTGATCACCTGTCCATCAGCAGCTAGCAGAGATTGGTTAAAGTTGAAACCATTCAAGTT 21616 ||| || || || | | | | | | | ||||||||| || ||||||||||| | | | Sbjct 52095 GTTAATTACATGACACTGACTATCAACTACAGATTGGTTGAAATTGAAACCATTTAGGGT 52036 Query 21617 GAAAGCCAT--GGTAGACACGCCAAGCGCAGCAAACCAAATACCTACAACAGGCCAGGCA 21674 |||| |||| | || || ||||| | |||||| |||||||| || ||||| ||| Sbjct 52035 GAAACCCATAGCGCTGATACCTAAAGCG--GTAAACCAGATACCTACTACGGGCCAAGCA 51978 Query 21675 GCAAGAAAGAAATG 21688 || | ||||| || Sbjct 51977 GCTCGGAAGAAGTG 51964 >seq25757 Length=3733 Score = 86.0 bits (94), Expect = 2e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 21471 GCAAGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTG 21530 || ||||| || |||||||| || || || || |||||||| || || | |||||||| Sbjct 3717 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 3658 Query 21531 GCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGAGAT 21590 ||||| || || |||| ||| ||||| || || | | | | | | | |||| Sbjct 3657 GCACGTATATATATATCAGTCCAAGTGTTAATTACACGACTCTGACTGTCAACTACAGAT 3598 Query 21591 TGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCAT 21625 || || || ||||||||||| | |||||||||||| Sbjct 3597 TGATTGAAATTGAAACCATTTAGGTTGAAAGCCAT 3563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146133359902200