Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21]
42,990 sequences; 724,284,658 total letters
Query= NC_020852.1
Length=186468
Score E
Sequences producing significant alignments: (Bits) Value
seq15443 111 2e-19
seq191 109 7e-19
seq30480 89.7 6e-13
seq728 86.0 7e-12
>seq15443
Length=42915
Score = 111 bits (122), Expect = 2e-19
Identities = 281/420 (67%), Gaps = 8/420 (2%)
Strand=Plus/Minus
Query 175231 GAGATTGTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAG-ATCCC 175289
||| | || || ||| | ||| |||||||||||| | || | |||| | | | || ||
Sbjct 29861 GAGGTCGTAGAATTTTTGAAGAAACCCGAGAGATTTACTGCA-GTGGGGGCTCGTATTCC 29803
Query 175290 CCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCAT 175349
||| | ||||| | ||| || ||||| || || ||| | || || || ||
Sbjct 29802 AAAAGGTGTTCTTCTTGTTGGTCCTCCTGGTACTGGGAAAACCTTGCTAGCAAAGGCAAT 29743
Query 175350 CGCGGGTGAATCAAATGTCCCATTCATC-CAGTGCTCTGCCGCAAACTTTGTGGAGATGT 175408
|| |||||| | ||| ||||| || || | || | || | || || |||||||
Sbjct 29742 TGCTGGTGAAGCGGGTGTTCCATTTTTCTCAATT-TCAGGTTCAGAATTCGTTGAGATGT 29684
Query 175409 TTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAAC 175468
|||||||||| || ||| | || || ||||| || | | ||| |||||| |
Sbjct 29683 TTGTTGGTGTTGGAGCCTCTCGAGTCCGTGATCTTTTCAAGAAGGCCAAGGAAAATGCTC 29624
Query 175469 CATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG--TGG 175526
| || ||||| || ||||||| |||||||| || || |||| | | |||| | |
Sbjct 29623 CTTGCATTGTATTTGTTGATGAAATTGATGCTGTTGGGCGGCAAAGAGGGACTGGAATTG 29564
Query 175527 TATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGG 175586
| | || |||||| || || ||||| || | || |||||| | || || ||||||||
Sbjct 29563 GAGG--AGGAAATGATGAAAGGGAACAGACCCTGAACCAACTATTGACTGAAATGGATGG 29506
Query 175587 CTTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGA 175646
|| || | ||||| || | ||| ||||||| || ||||| | ||||| |||||
Sbjct 29505 TTTCGAAGGAAATACTGGTATAATAGTTGTTGCGGCAACCAATCGTGCAGATATTCTTGA 29446
>seq191
Length=31611
Score = 109 bits (120), Expect = 7e-19
Identities = 192/280 (69%), Gaps = 10/280 (4%)
Strand=Plus/Plus
Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374
|||||||| ||||||||||| | || |||| | || ||||| | ||| |||||
Sbjct 21605 CCAGGTACTGGAAAGACCCTTTTAGCTAGAGCAGTAGCTGGTGAGGCTGGTGTGCCATTT 21664
Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434
|| || | || || | ||||| ||| ||||||| |||||||| || || |||
Sbjct 21665 TTCTCTTGTGCAGCGTCAGAGTTTGTTGAGTTGTTTGTGGGTGTGGGAGCTTCTAGAGTT 21724
Query 175435 CGCGATCTCTTTGAAATCGCCCGCGAAAATCAA-----CCATGTATTGTCTTCATTGATG 175489
| ||| | ||||| | || ||| || | || |||||||| || |||||||
Sbjct 21725 AGGGATTTGTTTGAGAAGGC-----AAAGTCGAAAGCGCCTTGTATTGTGTTTATTGATG 21779
Query 175490 AGATTGATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTATGCCAGCAAATGACGAGAGAG 175549
|||||||||| ||||| | |||| | | || ||| | | |||||| ||||| |
Sbjct 21780 AGATTGATGCTGTGGGAAGGCAAAGAGGTGCAGGTCTTGGAGGTGGAAATGATGAGAGGG 21839
Query 175550 AACAAACAATTAATCAACTACTCACCGAGATGGATGGCTT 175589
| || || |||||||| || | || || |||||||| ||
Sbjct 21840 AGCAGACTATTAATCAGCTTTTGACTGAAATGGATGGGTT 21879
>seq30480
Length=20585
Score = 89.7 bits (98), Expect = 6e-13
Identities = 154/224 (69%), Gaps = 0/224 (0%)
Strand=Plus/Plus
Query 75131 GACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCTTCAACGGCTC 75190
|||| ||| | || |||||||||| ||||||||||||| | | || ||| | | |
Sbjct 14425 GACTTTGACTATGATTACTTTGGTTTCAAAACCCTTGAAAGGTCTTACCTTTTAAAGATT 14484
Query 75191 GATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCAC 75250
| || | | |||||| ||||| | ||| | ||| | || | | || ||||||
Sbjct 14485 CAGGGAAAGATTGTGGAAAGGCCACAACATATGCTGATGAGAGTATCTGTTGGAATCCAC 14544
Query 75251 GGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATT 75310
|| || ||||| |||||| | ||||||| | |||||| ||| | ||||| |
Sbjct 14545 AAAGAGGATATTGAATCTGTCATCAAGACATATCATTTGATGTCTCAACGCTGGTTCACT 14604
Query 75311 CACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCA 75354
|| ||| | ||||| || || |||||||| || ||||| || ||
Sbjct 14605 CATGCATCTCCAACACTATTTAATGCTGGCACTCCAAGGCCTCA 14648
>seq728
Length=46982
Score = 86.0 bits (94), Expect = 7e-12
Identities = 150/218 (69%), Gaps = 3/218 (1%)
Strand=Plus/Minus
Query 65011 CCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGTCTCGCTCC 65070
|| ||| |||| ||||||||||||||||| | ||| | || ||| ||
Sbjct 2466 CCTTGTGTTGAAAAGAAGGCGAAATGGGCCCTTCGTTGGATCGATGG---GTCCGAAACC 2410
Query 65071 TTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTC 65130
||||| ||||| | | || ||||| ||||| || || || |||||| ||| |||
Sbjct 2409 TTCGCGGAGCGTTTGGTGGCTTTTGCCTGTGTTGAAGGGATTTTCTTCAGCGGAAGCTTC 2350
Query 65131 TGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAA 65190
|| | || | ||||||||| || ||||| | ||||| || || ||||||||||||
Sbjct 2349 TGTTCGATATTTTGGTTGAAAAAACGGGGGTTAATGCCTGGATTAACCTTCTCAAATGAG 2290
Query 65191 CTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGC 65228
| ||||| |||| || ||| | ||| || |||||
Sbjct 2289 TTAATTTCAAGAGACGAAGGTTTGCACTGTGATTTTGC 2252
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 596249018411200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |