Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21] 42,990 sequences; 724,284,658 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq15443 111 2e-19 seq191 109 7e-19 seq30480 89.7 6e-13 seq728 86.0 7e-12 >seq15443 Length=42915 Score = 111 bits (122), Expect = 2e-19 Identities = 281/420 (67%), Gaps = 8/420 (2%) Strand=Plus/Minus Query 175231 GAGATTGTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAG-ATCCC 175289 ||| | || || ||| | ||| |||||||||||| | || | |||| | | | || || Sbjct 29861 GAGGTCGTAGAATTTTTGAAGAAACCCGAGAGATTTACTGCA-GTGGGGGCTCGTATTCC 29803 Query 175290 CCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCAT 175349 ||| | ||||| | ||| || ||||| || || ||| | || || || || Sbjct 29802 AAAAGGTGTTCTTCTTGTTGGTCCTCCTGGTACTGGGAAAACCTTGCTAGCAAAGGCAAT 29743 Query 175350 CGCGGGTGAATCAAATGTCCCATTCATC-CAGTGCTCTGCCGCAAACTTTGTGGAGATGT 175408 || |||||| | ||| ||||| || || | || | || | || || ||||||| Sbjct 29742 TGCTGGTGAAGCGGGTGTTCCATTTTTCTCAATT-TCAGGTTCAGAATTCGTTGAGATGT 29684 Query 175409 TTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAAC 175468 |||||||||| || ||| | || || ||||| || | | ||| |||||| | Sbjct 29683 TTGTTGGTGTTGGAGCCTCTCGAGTCCGTGATCTTTTCAAGAAGGCCAAGGAAAATGCTC 29624 Query 175469 CATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG--TGG 175526 | || ||||| || ||||||| |||||||| || || |||| | | |||| | | Sbjct 29623 CTTGCATTGTATTTGTTGATGAAATTGATGCTGTTGGGCGGCAAAGAGGGACTGGAATTG 29564 Query 175527 TATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGG 175586 | | || |||||| || || ||||| || | || |||||| | || || |||||||| Sbjct 29563 GAGG--AGGAAATGATGAAAGGGAACAGACCCTGAACCAACTATTGACTGAAATGGATGG 29506 Query 175587 CTTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGA 175646 || || | ||||| || | ||| ||||||| || ||||| | ||||| ||||| Sbjct 29505 TTTCGAAGGAAATACTGGTATAATAGTTGTTGCGGCAACCAATCGTGCAGATATTCTTGA 29446 >seq191 Length=31611 Score = 109 bits (120), Expect = 7e-19 Identities = 192/280 (69%), Gaps = 10/280 (4%) Strand=Plus/Plus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 |||||||| ||||||||||| | || |||| | || ||||| | ||| ||||| Sbjct 21605 CCAGGTACTGGAAAGACCCTTTTAGCTAGAGCAGTAGCTGGTGAGGCTGGTGTGCCATTT 21664 Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434 || || | || || | ||||| ||| ||||||| |||||||| || || ||| Sbjct 21665 TTCTCTTGTGCAGCGTCAGAGTTTGTTGAGTTGTTTGTGGGTGTGGGAGCTTCTAGAGTT 21724 Query 175435 CGCGATCTCTTTGAAATCGCCCGCGAAAATCAA-----CCATGTATTGTCTTCATTGATG 175489 | ||| | ||||| | || ||| || | || |||||||| || ||||||| Sbjct 21725 AGGGATTTGTTTGAGAAGGC-----AAAGTCGAAAGCGCCTTGTATTGTGTTTATTGATG 21779 Query 175490 AGATTGATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTATGCCAGCAAATGACGAGAGAG 175549 |||||||||| ||||| | |||| | | || ||| | | |||||| ||||| | Sbjct 21780 AGATTGATGCTGTGGGAAGGCAAAGAGGTGCAGGTCTTGGAGGTGGAAATGATGAGAGGG 21839 Query 175550 AACAAACAATTAATCAACTACTCACCGAGATGGATGGCTT 175589 | || || |||||||| || | || || |||||||| || Sbjct 21840 AGCAGACTATTAATCAGCTTTTGACTGAAATGGATGGGTT 21879 >seq30480 Length=20585 Score = 89.7 bits (98), Expect = 6e-13 Identities = 154/224 (69%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 75131 GACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCTTCAACGGCTC 75190 |||| ||| | || |||||||||| ||||||||||||| | | || ||| | | | Sbjct 14425 GACTTTGACTATGATTACTTTGGTTTCAAAACCCTTGAAAGGTCTTACCTTTTAAAGATT 14484 Query 75191 GATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCAC 75250 | || | | |||||| ||||| | ||| | ||| | || | | || |||||| Sbjct 14485 CAGGGAAAGATTGTGGAAAGGCCACAACATATGCTGATGAGAGTATCTGTTGGAATCCAC 14544 Query 75251 GGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATT 75310 || || ||||| |||||| | ||||||| | |||||| ||| | ||||| | Sbjct 14545 AAAGAGGATATTGAATCTGTCATCAAGACATATCATTTGATGTCTCAACGCTGGTTCACT 14604 Query 75311 CACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCA 75354 || ||| | ||||| || || |||||||| || ||||| || || Sbjct 14605 CATGCATCTCCAACACTATTTAATGCTGGCACTCCAAGGCCTCA 14648 >seq728 Length=46982 Score = 86.0 bits (94), Expect = 7e-12 Identities = 150/218 (69%), Gaps = 3/218 (1%) Strand=Plus/Minus Query 65011 CCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGTCTCGCTCC 65070 || ||| |||| ||||||||||||||||| | ||| | || ||| || Sbjct 2466 CCTTGTGTTGAAAAGAAGGCGAAATGGGCCCTTCGTTGGATCGATGG---GTCCGAAACC 2410 Query 65071 TTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTC 65130 ||||| ||||| | | || ||||| ||||| || || || |||||| ||| ||| Sbjct 2409 TTCGCGGAGCGTTTGGTGGCTTTTGCCTGTGTTGAAGGGATTTTCTTCAGCGGAAGCTTC 2350 Query 65131 TGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAA 65190 || | || | ||||||||| || ||||| | ||||| || || |||||||||||| Sbjct 2349 TGTTCGATATTTTGGTTGAAAAAACGGGGGTTAATGCCTGGATTAACCTTCTCAAATGAG 2290 Query 65191 CTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGC 65228 | ||||| |||| || ||| | ||| || ||||| Sbjct 2289 TTAATTTCAAGAGACGAAGGTTTGCACTGTGATTTTGC 2252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596249018411200