Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21]
42,990 sequences; 724,284,658 total letters
Query= NC_020855.1
Length=192497
Score E
Sequences producing significant alignments: (Bits) Value
seq11014 168 8e-37
seq20193 149 8e-31
seq31657 107 2e-18
>seq11014
Length=29319
Score = 168 bits (186), Expect = 8e-37
Identities = 279/402 (69%), Gaps = 2/402 (0%)
Strand=Plus/Minus
Query 8446 AAGAACACTGCGAAAGCAGCAGATACTGGAGCACTATATGCTACACAGATCCATGGTCTC 8505
||||| |||||| |||| | | || |||| |||||| ||| ||||| |||| |
Sbjct 10463 AAGAAAACTGCGGTAGCAACTGCAACAAGAGCTGAATATGCAACAGCAATCCAAGGTCGC 10404
Query 8506 ATACCTAAGCGGTATGATAA-CTCCCACTGTCTACCCATGTAAGCAGAAATTCCAATAAG 8564
||||| | ||| | | ||| |||||||| |||||||||| || | |||| |
Sbjct 10403 ATACCYASACGGAA-GCTAAGCTCCCACTCAYGACCCATGTAACAAGCTACGCCAAGTAA 10345
Query 8565 GAAGTGGAAGATAACCAACTGATATGGACCTCCGTTATACAACCACTCATCTAATGTGGC 8624
|||||| | | || | | ||| ||||| ||||| | ||||| ||||| | | ||
Sbjct 10344 GAAGTGTAGAACAATTAGTTCATAAGGACCACCGTTGAATAACCATTCATCAACGGATGC 10285
Query 8625 AGCTTCCCAAATGGGATAGAAGTGTAATCCAATAGCGTTGGAAGATGGAACGACAGCACC 8684
|||||||| || || || || ||||| || ||||| |||| |||| | |||||
Sbjct 10284 CGCTTCCCAGATTGGGTAAAAATGTAAACCTATAGCTGCAGAAGTAGGAATAATGGCACC 10225
Query 8685 AGAGATGATGTTGTTTCCATACATGAATGAACCTGCAACAGGTTCACGAATACCGTCGAT 8744
|| || ||||||||||| || | | || |||| ||||||||||| |||||| || ||
Sbjct 10224 GGAAATAATGTTGTTTCCGTAAAGTAGAGACCCTGAAACAGGTTCACCAATACCATCAAT 10165
Query 8745 ATCGACAGGTGGAGCAGCAATAAATGCCACGATAAAGCAAGTAGCAGCAGCTAACAAGCA 8804
|| || || |||||| |||| || || | ||||| || || || | || |||
Sbjct 10164 GTCTACTGGAGGAGCAACAATGAAGGCAATAATAAATACAGAAGTWGCCGTCAATAAGGT 10105
Query 8805 AGGAATCATTAGAACTCCAAACCAACCGACATAAAGTCTGTT 8846
||| ||||| | ||| ||||||| || | ||||| | |||
Sbjct 10104 AGGGATCATCAAAACACCAAACCGTCCAATGTAAAGACGGTT 10063
>seq20193
Length=7469
Score = 149 bits (164), Expect = 8e-31
Identities = 296/442 (67%), Gaps = 24/442 (5%)
Strand=Plus/Plus
Query 8428 TGACCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGGAGCACTATATGCT 8487
||||||| ||| || | |||||| |||||| |||||| | || ||||| ||||||
Sbjct 6370 TGACCAATTGGGTAGATTAAGAAAACTGCGGTAGCAGCTGCAACAGGAGCTGAATATGCA 6429
Query 8488 ACA--------------------CAG--ATCCATGGTCTCATACCTAAGCGGTATGATAA 8525
||| ||| ||||| ||| |||||| | || | | |||
Sbjct 6430 ACAGCAATCCAAAGTTGCATACCCAGCAATCCAAGGTTGCATACCCAGATGGAA-GCTAA 6488
Query 8526 -CTCCCACTGTCTACCCATGTAAGCAGAAATTCCAATAAGGAAGTGGAAGATAACCAACT 8584
|||||||| | |||||||||| || | |||| | |||||| | | || | |
Sbjct 6489 GCTCCCACTCACGACCCATGTAACAAGCTACGCCAAGTAAGAAGTGTAGAACAATTAGTT 6548
Query 8585 GATATGGACCTCCGTTATACAACCACTCATCTAATGTGGCAGCTTCCCAAATGGGATAGA 8644
||| ||||| |||| || ||||| ||||| | | | |||||||| || || || |
Sbjct 6549 CATAAGGACCAYCGTTGTATAACCATTCATCAACGGATGTCGCTTCCCAGATTGGGTAAA 6608
Query 8645 AGTGTAATCCAATAGCGTTGGAAGATGGAACGACAGCACCAGAGATGATGTTGTTTCCAT 8704
| ||||| || ||||| |||| |||| | ||||| || || ||||||||||| |
Sbjct 6609 AATGTAAACCTATAGCTGCAGAAGTAGGAATAATGGCACCGGAAATAATGTTGTTTCCGT 6668
Query 8705 ACATGAATGAACCTGCAACAGGTTCACGAATACCGTCGATATCGACAGGTGGAGCAGCAA 8764
| | || |||| |||||||||||||||||| || || || || || ||||||||||
Sbjct 6669 DAAGTAGAGACCCTGAAACAGGTTCACGAATACCATCAATGTCTACTGGAGGAGCAGCAA 6728
Query 8765 TAAATGCCACGATAAAGCAAGTAGCAGCAGCTAACAAGCAAGGAATCATTAGAACTCCAA 8824
| || || | ||||| | || || | || ||| || ||||| | ||| ||||
Sbjct 6729 TGAAGGCAATAATAAATACARAAGTTGCCGTCAATAAGGTAGAGATCATCAAAACACCAA 6788
Query 8825 ACCAACCGACATAAAGTCTGTT 8846
|||| || | ||||| | |||
Sbjct 6789 ACCATCCAATGTAAAGACGGTT 6810
>seq31657
Length=14304
Score = 107 bits (118), Expect = 2e-18
Identities = 108/141 (77%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 8325 CATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGAATACGAACATGAAGTTAAA 8384
||| || || || |||||||| ||||| || || || ||||||| | |||||| || ||
Sbjct 428 CATGTGAAATGGGTGCATAAGGATGTTGTGTTCAGCCTGGAATABAATCATGAAATTGAA 369
Query 8385 CGTACCAGAAATACCTAGAGGCATTCCATCAGAGAATGAACCCTGACCAAATGGATATAC 8444
|||||||| || ||||||||||| |||||||| || || ||||| | ||| || |
Sbjct 368 AGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCGATTGGGTAGAT 309
Query 8445 TAAGAACACTGCGAAAGCAGC 8465
||||| |||||| ||||||
Sbjct 308 CAAGAAAACTGCGGTAGCAGC 288
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 615531450942800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |