Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21] 42,990 sequences; 724,284,658 total letters Query= NC_020855.1 Length=192497 Score E Sequences producing significant alignments: (Bits) Value seq11014 168 8e-37 seq20193 149 8e-31 seq31657 107 2e-18 >seq11014 Length=29319 Score = 168 bits (186), Expect = 8e-37 Identities = 279/402 (69%), Gaps = 2/402 (0%) Strand=Plus/Minus Query 8446 AAGAACACTGCGAAAGCAGCAGATACTGGAGCACTATATGCTACACAGATCCATGGTCTC 8505 ||||| |||||| |||| | | || |||| |||||| ||| ||||| |||| | Sbjct 10463 AAGAAAACTGCGGTAGCAACTGCAACAAGAGCTGAATATGCAACAGCAATCCAAGGTCGC 10404 Query 8506 ATACCTAAGCGGTATGATAA-CTCCCACTGTCTACCCATGTAAGCAGAAATTCCAATAAG 8564 ||||| | ||| | | ||| |||||||| |||||||||| || | |||| | Sbjct 10403 ATACCYASACGGAA-GCTAAGCTCCCACTCAYGACCCATGTAACAAGCTACGCCAAGTAA 10345 Query 8565 GAAGTGGAAGATAACCAACTGATATGGACCTCCGTTATACAACCACTCATCTAATGTGGC 8624 |||||| | | || | | ||| ||||| ||||| | ||||| ||||| | | || Sbjct 10344 GAAGTGTAGAACAATTAGTTCATAAGGACCACCGTTGAATAACCATTCATCAACGGATGC 10285 Query 8625 AGCTTCCCAAATGGGATAGAAGTGTAATCCAATAGCGTTGGAAGATGGAACGACAGCACC 8684 |||||||| || || || || ||||| || ||||| |||| |||| | ||||| Sbjct 10284 CGCTTCCCAGATTGGGTAAAAATGTAAACCTATAGCTGCAGAAGTAGGAATAATGGCACC 10225 Query 8685 AGAGATGATGTTGTTTCCATACATGAATGAACCTGCAACAGGTTCACGAATACCGTCGAT 8744 || || ||||||||||| || | | || |||| ||||||||||| |||||| || || Sbjct 10224 GGAAATAATGTTGTTTCCGTAAAGTAGAGACCCTGAAACAGGTTCACCAATACCATCAAT 10165 Query 8745 ATCGACAGGTGGAGCAGCAATAAATGCCACGATAAAGCAAGTAGCAGCAGCTAACAAGCA 8804 || || || |||||| |||| || || | ||||| || || || | || ||| Sbjct 10164 GTCTACTGGAGGAGCAACAATGAAGGCAATAATAAATACAGAAGTWGCCGTCAATAAGGT 10105 Query 8805 AGGAATCATTAGAACTCCAAACCAACCGACATAAAGTCTGTT 8846 ||| ||||| | ||| ||||||| || | ||||| | ||| Sbjct 10104 AGGGATCATCAAAACACCAAACCGTCCAATGTAAAGACGGTT 10063 >seq20193 Length=7469 Score = 149 bits (164), Expect = 8e-31 Identities = 296/442 (67%), Gaps = 24/442 (5%) Strand=Plus/Plus Query 8428 TGACCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGGAGCACTATATGCT 8487 ||||||| ||| || | |||||| |||||| |||||| | || ||||| |||||| Sbjct 6370 TGACCAATTGGGTAGATTAAGAAAACTGCGGTAGCAGCTGCAACAGGAGCTGAATATGCA 6429 Query 8488 ACA--------------------CAG--ATCCATGGTCTCATACCTAAGCGGTATGATAA 8525 ||| ||| ||||| ||| |||||| | || | | ||| Sbjct 6430 ACAGCAATCCAAAGTTGCATACCCAGCAATCCAAGGTTGCATACCCAGATGGAA-GCTAA 6488 Query 8526 -CTCCCACTGTCTACCCATGTAAGCAGAAATTCCAATAAGGAAGTGGAAGATAACCAACT 8584 |||||||| | |||||||||| || | |||| | |||||| | | || | | Sbjct 6489 GCTCCCACTCACGACCCATGTAACAAGCTACGCCAAGTAAGAAGTGTAGAACAATTAGTT 6548 Query 8585 GATATGGACCTCCGTTATACAACCACTCATCTAATGTGGCAGCTTCCCAAATGGGATAGA 8644 ||| ||||| |||| || ||||| ||||| | | | |||||||| || || || | Sbjct 6549 CATAAGGACCAYCGTTGTATAACCATTCATCAACGGATGTCGCTTCCCAGATTGGGTAAA 6608 Query 8645 AGTGTAATCCAATAGCGTTGGAAGATGGAACGACAGCACCAGAGATGATGTTGTTTCCAT 8704 | ||||| || ||||| |||| |||| | ||||| || || ||||||||||| | Sbjct 6609 AATGTAAACCTATAGCTGCAGAAGTAGGAATAATGGCACCGGAAATAATGTTGTTTCCGT 6668 Query 8705 ACATGAATGAACCTGCAACAGGTTCACGAATACCGTCGATATCGACAGGTGGAGCAGCAA 8764 | | || |||| |||||||||||||||||| || || || || || |||||||||| Sbjct 6669 DAAGTAGAGACCCTGAAACAGGTTCACGAATACCATCAATGTCTACTGGAGGAGCAGCAA 6728 Query 8765 TAAATGCCACGATAAAGCAAGTAGCAGCAGCTAACAAGCAAGGAATCATTAGAACTCCAA 8824 | || || | ||||| | || || | || ||| || ||||| | ||| |||| Sbjct 6729 TGAAGGCAATAATAAATACARAAGTTGCCGTCAATAAGGTAGAGATCATCAAAACACCAA 6788 Query 8825 ACCAACCGACATAAAGTCTGTT 8846 |||| || | ||||| | ||| Sbjct 6789 ACCATCCAATGTAAAGACGGTT 6810 >seq31657 Length=14304 Score = 107 bits (118), Expect = 2e-18 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 8325 CATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGAATACGAACATGAAGTTAAA 8384 ||| || || || |||||||| ||||| || || || ||||||| | |||||| || || Sbjct 428 CATGTGAAATGGGTGCATAAGGATGTTGTGTTCAGCCTGGAATABAATCATGAAATTGAA 369 Query 8385 CGTACCAGAAATACCTAGAGGCATTCCATCAGAGAATGAACCCTGACCAAATGGATATAC 8444 |||||||| || ||||||||||| |||||||| || || ||||| | ||| || | Sbjct 368 AGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCGATTGGGTAGAT 309 Query 8445 TAAGAACACTGCGAAAGCAGC 8465 ||||| |||||| |||||| Sbjct 308 CAAGAAAACTGCGGTAGCAGC 288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 615531450942800