Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21] 42,990 sequences; 724,284,658 total letters Query= NC_020865.1 Length=45730 Score E Sequences producing significant alignments: (Bits) Value seq11014 168 2e-37 seq20193 141 3e-29 seq15728 98.7 3e-16 seq31657 91.5 4e-14 seq46 91.5 4e-14 seq25757 86.0 2e-12 >seq11014 Length=29319 Score = 168 bits (186), Expect = 2e-37 Identities = 281/406 (69%), Gaps = 2/406 (0%) Strand=Plus/Plus Query 41255 ACTAATAACCGTCTTTATGTAGGATGGTTCGGAGTCCTTATGATTCCGTGCCTCCTTG-C 41313 ||| | ||||||||||| | ||| |||| || || | |||| ||| | ||| ||| | Sbjct 10057 ACTGAAAACCGTCTTTACATTGGACGGTTTGGTGTTTTGATGA-TCCCTACCTTATTGAC 10115 Query 41314 CGCTACAACTTGTTTTATTATCGCCTTTGTTGGCGCACCACCTGTTGACATCGATGGAAT 41373 || || || |||||||| ||||| ||| || || || || ||||| ||||| || Sbjct 10116 GGCWACTTCTGTATTTATTATTGCCTTCATTGTTGCTCCTCCAGTAGACATTGATGGTAT 10175 Query 41374 CCGAGAACCCGTCGCTGGCTCCCTGTTGTATGGTAACAACATCATATCAGGAGCCGTCGT 41433 | ||||| || | || || || | || || |||||||| || || || ||| | | Sbjct 10176 TGGTGAACCTGTTTCAGGGTCTCTACTTTACGGAAACAACATTATTTCCGGTGCCATTAT 10235 Query 41434 TCCGAGCAGTAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTGCTACACTTGA 41493 ||| | | || || || |||| || |||||||| |||||||| || | |||| Sbjct 10236 TCCTACTTCTGCAGCTATAGGTTTACATTTTTACCCAATCTGGGAAGCGGCATCCGTTGA 10295 Query 41494 TGAATGGCTGTACAACGGCGGTCCATTCCAACTCACCGTATTCCACTTCCTCATTGGCGT 41553 ||||||| | | |||||| ||||| | |||| | || | |||||| | ||||||| Sbjct 10296 TGAATGGTTATTCAACGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGCGT 10355 Query 41554 CTTTGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGGATGAGGCCCTGGAT 41613 | ||||||||| | |||||||| ||||||| || | || ||| | || ||||| Sbjct 10356 AGCTTGTTACATGGGTCRTGAGTGGGAGCTTAGCTTCCGTSTRGGTATGCGACCTTGGAT 10415 Query 41614 CTTTGTTGCGTACTCTGCTCCTGTCGCCGCTGCGACTGCTGTGTTC 41659 |||||| || || |||| ||| || | ||| || || || ||| Sbjct 10416 TGCTGTTGCATATTCAGCTCTTGTTGCAGTTGCTACCGCAGTTTTC 10461 >seq20193 Length=7469 Score = 141 bits (156), Expect = 3e-29 Identities = 231/331 (70%), Gaps = 6/331 (2%) Strand=Plus/Minus Query 41261 AACCGTCTTTATGTAGGATGGTTCGGAGTCCTTATGATTCCGTGCCTCCTTGCCGCTACA 41320 ||||||||||| | |||||||| || || | ||||| | | ||| ||| || || Sbjct 6810 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCTC-TACCTTATTGACGG--CA 6754 Query 41321 ACTTGT---TTTATTATCGCCTTTGTTGGCGCACCACCTGTTGACATCGATGGAATCCGA 41377 |||| | |||||||| ||||| ||| || || || || ||||| ||||| || || Sbjct 6753 ACTTYTGTATTTATTATTGCCTTCATTGCTGCTCCTCCAGTAGACATTGATGGTATTCGT 6694 Query 41378 GAACCCGTCGCTGGCTCCCTGTTGTATGGTAACAACATCATATCAGGAGCCGTCGTTCCG 41437 ||||| || | || || || | | || |||||||| || || || ||| | |||| Sbjct 6693 GAACCTGTTTCAGGGTCTCTACTTHACGGAAACAACATTATTTCCGGTGCCATTATTCCT 6634 Query 41438 AGCAGTAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTGCTACACTTGATGAA 41497 | | || || || |||| || |||||||| |||||||| | | |||||||| Sbjct 6633 ACTTCTGCAGCTATAGGTTTACATTTTTACCCAATCTGGGAAGCGACATCCGTTGATGAA 6574 Query 41498 TGGCTGTACAACGGCGGTCCATTCCAACTCACCGTATTCCACTTCCTCATTGGCGTCTTT 41557 ||| | ||||||| ||||| | |||| | || | |||||| | ||||||| | Sbjct 6573 TGGTTATACAACGRTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGCGTAGCT 6514 Query 41558 GCTTACATGGGACGAGAGTGGGAACTTAGCT 41588 ||||||||| || |||||||| ||||||| Sbjct 6513 TGTTACATGGGTCGTGAGTGGGAGCTTAGCT 6483 >seq15728 Length=57915 Score = 98.7 bits (108), Expect = 3e-16 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 41892 GTTACAAGTTTGGTCAAGAGGAAGAGACTTACAATATTGTTGCTGCTCACGGCTATTTTG 41951 |||||| || ||||||||||| | ||||| |||||||| | | ||| || ||||||| Sbjct 13132 GTTACATATTCTGTCAAGAGGAAAAAACTTATAATATTGTAGTCGTTCATGGTTATTTTG 13191 Query 41952 GTCGGCTTATCTTCCAATATGCTAGCTTTAATAATTCCCGTAGTCTTCATTTCTTTCTTG 42011 | | | |||| || ||||| ||| || ||| | || ||| | || ||||| |||| Sbjct 13192 GCTGATTGATCTACCGATATGTTAGTTTCAATGACTCTCGTTCGTTACACTTCTTCCTTG 13251 Query 42012 CTGCCTGGCCTGTTGTAGGTATTTGGTTT 42040 |||| |||| | | |||||||| |||||| Sbjct 13252 CTGCTTGGCATATAGTAGGTATCTGGTTT 13280 >seq31657 Length=14304 Score = 91.5 bits (100), Expect = 4e-14 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 41636 GTCGCCGCTGCGACTGCTGTGTTCCTTGTTTATCCGTTTGGACAGGGCTCTTTTTCTGAT 41695 || || ||||| || || || ||| | | || || | || || || |||||||||| Sbjct 282 GTTGCAGCTGCTACCGCAGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGAT 341 Query 41696 GCTATGCCCTTGGGGATATCCGGCACCTTCAACTACATGCTGGTGTTCCAGGCTGAGCAC 41755 | |||||| | || || || || || ||||| | |||| | | ||||||||||| ||| Sbjct 342 GGTATGCCTCTAGGAATCTCTGGTACTTTCAATTTCATGATTVTATTCCAGGCTGAACAC 401 Query 41756 AATATTCTTATGCATCCTTTTCACATG 41782 || || |||||||| || ||||||||| Sbjct 402 AACATCCTTATGCACCCATTTCACATG 428 >seq46 Length=65133 Score = 91.5 bits (100), Expect = 4e-14 Identities = 139/194 (72%), Gaps = 8/194 (4%) Strand=Plus/Plus Query 41999 CATTTCTTTCTTGCTGCCTGGCCTGTTGTAGGTATTTGGTTTGCTGCGCTTGGCGTGTCT 42058 || ||||| | ||||| ||||| || |||||||| |||||| | ||||| || || Sbjct 51964 CACTTCTTCCGAGCTGCTTGGCCCGTAGTAGGTATCTGGTTTAC--CGCTTTAGGTATCA 52021 Query 42059 ACC--ATGGCTTTCAACTTGAATGGTTTCAACTTTAACCAATCTCTGCTAGCTGCTGATG 42116 | |||| ||||| | | ||||||||||| || ||||||||| | | | | | | Sbjct 52022 GCGCTATGGGTTTCACCCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAGT 52081 Query 42117 GACAGGTGATCAACACCTGGGCTGACAT---TC-TTAACCGTGCCAACCTTGGCTTTGAG 42172 | || || || ||||| ||||| || || || | |||||||| |||||||| | || Sbjct 52082 GTCATGTAATTAACACTTGGGCCGATATGTATCATCAACCGTGCTAACCTTGGTATGGAA 52141 Query 42173 GTGATGCATGAGCG 42186 || |||||||| || Sbjct 52142 GTTATGCATGAACG 52155 >seq25757 Length=3733 Score = 86.0 bits (94), Expect = 2e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 42062 ATGGCTTTCAACTTGAATGGTTTCAACTTTAACCAATCTCTGCTAGCTGCTGATGGACAG 42121 |||||||||||| | ||||||||||| || || |||||| | | | | | | | Sbjct 3563 ATGGCTTTCAACCTAAATGGTTTCAATTTCAATCAATCTGTAGTTGACAGTCAGAGTCGT 3622 Query 42122 GTGATCAACACCTGGGCTGACATTCTTAACCGTGCCAACCTTGGCTTTGAGGTGATGCAT 42181 || || ||||| ||| |||| || || ||||| |||||||| | || || |||||| Sbjct 3623 GTAATTAACACTTGGACTGATATATATATACGTGCTAACCTTGGTATGGAAGTTATGCAT 3682 Query 42182 GAGCGGAACGCACACAACTTCCCGCTTGACCTTGC 42216 || || || || || |||||||| || ||||| || Sbjct 3683 GAACGTAATGCTCATAACTTCCCTCTAGACCTAGC 3717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146139756634960