Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21]
42,990 sequences; 724,284,658 total letters
Query= NC_020865.1
Length=45730
Score E
Sequences producing significant alignments: (Bits) Value
seq11014 168 2e-37
seq20193 141 3e-29
seq15728 98.7 3e-16
seq31657 91.5 4e-14
seq46 91.5 4e-14
seq25757 86.0 2e-12
>seq11014
Length=29319
Score = 168 bits (186), Expect = 2e-37
Identities = 281/406 (69%), Gaps = 2/406 (0%)
Strand=Plus/Plus
Query 41255 ACTAATAACCGTCTTTATGTAGGATGGTTCGGAGTCCTTATGATTCCGTGCCTCCTTG-C 41313
||| | ||||||||||| | ||| |||| || || | |||| ||| | ||| ||| |
Sbjct 10057 ACTGAAAACCGTCTTTACATTGGACGGTTTGGTGTTTTGATGA-TCCCTACCTTATTGAC 10115
Query 41314 CGCTACAACTTGTTTTATTATCGCCTTTGTTGGCGCACCACCTGTTGACATCGATGGAAT 41373
|| || || |||||||| ||||| ||| || || || || ||||| ||||| ||
Sbjct 10116 GGCWACTTCTGTATTTATTATTGCCTTCATTGTTGCTCCTCCAGTAGACATTGATGGTAT 10175
Query 41374 CCGAGAACCCGTCGCTGGCTCCCTGTTGTATGGTAACAACATCATATCAGGAGCCGTCGT 41433
| ||||| || | || || || | || || |||||||| || || || ||| | |
Sbjct 10176 TGGTGAACCTGTTTCAGGGTCTCTACTTTACGGAAACAACATTATTTCCGGTGCCATTAT 10235
Query 41434 TCCGAGCAGTAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTGCTACACTTGA 41493
||| | | || || || |||| || |||||||| |||||||| || | ||||
Sbjct 10236 TCCTACTTCTGCAGCTATAGGTTTACATTTTTACCCAATCTGGGAAGCGGCATCCGTTGA 10295
Query 41494 TGAATGGCTGTACAACGGCGGTCCATTCCAACTCACCGTATTCCACTTCCTCATTGGCGT 41553
||||||| | | |||||| ||||| | |||| | || | |||||| | |||||||
Sbjct 10296 TGAATGGTTATTCAACGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGCGT 10355
Query 41554 CTTTGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGGATGAGGCCCTGGAT 41613
| ||||||||| | |||||||| ||||||| || | || ||| | || |||||
Sbjct 10356 AGCTTGTTACATGGGTCRTGAGTGGGAGCTTAGCTTCCGTSTRGGTATGCGACCTTGGAT 10415
Query 41614 CTTTGTTGCGTACTCTGCTCCTGTCGCCGCTGCGACTGCTGTGTTC 41659
|||||| || || |||| ||| || | ||| || || || |||
Sbjct 10416 TGCTGTTGCATATTCAGCTCTTGTTGCAGTTGCTACCGCAGTTTTC 10461
>seq20193
Length=7469
Score = 141 bits (156), Expect = 3e-29
Identities = 231/331 (70%), Gaps = 6/331 (2%)
Strand=Plus/Minus
Query 41261 AACCGTCTTTATGTAGGATGGTTCGGAGTCCTTATGATTCCGTGCCTCCTTGCCGCTACA 41320
||||||||||| | |||||||| || || | ||||| | | ||| ||| || ||
Sbjct 6810 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCTC-TACCTTATTGACGG--CA 6754
Query 41321 ACTTGT---TTTATTATCGCCTTTGTTGGCGCACCACCTGTTGACATCGATGGAATCCGA 41377
|||| | |||||||| ||||| ||| || || || || ||||| ||||| || ||
Sbjct 6753 ACTTYTGTATTTATTATTGCCTTCATTGCTGCTCCTCCAGTAGACATTGATGGTATTCGT 6694
Query 41378 GAACCCGTCGCTGGCTCCCTGTTGTATGGTAACAACATCATATCAGGAGCCGTCGTTCCG 41437
||||| || | || || || | | || |||||||| || || || ||| | ||||
Sbjct 6693 GAACCTGTTTCAGGGTCTCTACTTHACGGAAACAACATTATTTCCGGTGCCATTATTCCT 6634
Query 41438 AGCAGTAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTGCTACACTTGATGAA 41497
| | || || || |||| || |||||||| |||||||| | | ||||||||
Sbjct 6633 ACTTCTGCAGCTATAGGTTTACATTTTTACCCAATCTGGGAAGCGACATCCGTTGATGAA 6574
Query 41498 TGGCTGTACAACGGCGGTCCATTCCAACTCACCGTATTCCACTTCCTCATTGGCGTCTTT 41557
||| | ||||||| ||||| | |||| | || | |||||| | ||||||| |
Sbjct 6573 TGGTTATACAACGRTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGCGTAGCT 6514
Query 41558 GCTTACATGGGACGAGAGTGGGAACTTAGCT 41588
||||||||| || |||||||| |||||||
Sbjct 6513 TGTTACATGGGTCGTGAGTGGGAGCTTAGCT 6483
>seq15728
Length=57915
Score = 98.7 bits (108), Expect = 3e-16
Identities = 111/149 (74%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 41892 GTTACAAGTTTGGTCAAGAGGAAGAGACTTACAATATTGTTGCTGCTCACGGCTATTTTG 41951
|||||| || ||||||||||| | ||||| |||||||| | | ||| || |||||||
Sbjct 13132 GTTACATATTCTGTCAAGAGGAAAAAACTTATAATATTGTAGTCGTTCATGGTTATTTTG 13191
Query 41952 GTCGGCTTATCTTCCAATATGCTAGCTTTAATAATTCCCGTAGTCTTCATTTCTTTCTTG 42011
| | | |||| || ||||| ||| || ||| | || ||| | || ||||| ||||
Sbjct 13192 GCTGATTGATCTACCGATATGTTAGTTTCAATGACTCTCGTTCGTTACACTTCTTCCTTG 13251
Query 42012 CTGCCTGGCCTGTTGTAGGTATTTGGTTT 42040
|||| |||| | | |||||||| ||||||
Sbjct 13252 CTGCTTGGCATATAGTAGGTATCTGGTTT 13280
>seq31657
Length=14304
Score = 91.5 bits (100), Expect = 4e-14
Identities = 108/147 (73%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 41636 GTCGCCGCTGCGACTGCTGTGTTCCTTGTTTATCCGTTTGGACAGGGCTCTTTTTCTGAT 41695
|| || ||||| || || || ||| | | || || | || || || ||||||||||
Sbjct 282 GTTGCAGCTGCTACCGCAGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGAT 341
Query 41696 GCTATGCCCTTGGGGATATCCGGCACCTTCAACTACATGCTGGTGTTCCAGGCTGAGCAC 41755
| |||||| | || || || || || ||||| | |||| | | ||||||||||| |||
Sbjct 342 GGTATGCCTCTAGGAATCTCTGGTACTTTCAATTTCATGATTVTATTCCAGGCTGAACAC 401
Query 41756 AATATTCTTATGCATCCTTTTCACATG 41782
|| || |||||||| || |||||||||
Sbjct 402 AACATCCTTATGCACCCATTTCACATG 428
>seq46
Length=65133
Score = 91.5 bits (100), Expect = 4e-14
Identities = 139/194 (72%), Gaps = 8/194 (4%)
Strand=Plus/Plus
Query 41999 CATTTCTTTCTTGCTGCCTGGCCTGTTGTAGGTATTTGGTTTGCTGCGCTTGGCGTGTCT 42058
|| ||||| | ||||| ||||| || |||||||| |||||| | ||||| || ||
Sbjct 51964 CACTTCTTCCGAGCTGCTTGGCCCGTAGTAGGTATCTGGTTTAC--CGCTTTAGGTATCA 52021
Query 42059 ACC--ATGGCTTTCAACTTGAATGGTTTCAACTTTAACCAATCTCTGCTAGCTGCTGATG 42116
| |||| ||||| | | ||||||||||| || ||||||||| | | | | | |
Sbjct 52022 GCGCTATGGGTTTCACCCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAGT 52081
Query 42117 GACAGGTGATCAACACCTGGGCTGACAT---TC-TTAACCGTGCCAACCTTGGCTTTGAG 42172
| || || || ||||| ||||| || || || | |||||||| |||||||| | ||
Sbjct 52082 GTCATGTAATTAACACTTGGGCCGATATGTATCATCAACCGTGCTAACCTTGGTATGGAA 52141
Query 42173 GTGATGCATGAGCG 42186
|| |||||||| ||
Sbjct 52142 GTTATGCATGAACG 52155
>seq25757
Length=3733
Score = 86.0 bits (94), Expect = 2e-12
Identities = 112/155 (72%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 42062 ATGGCTTTCAACTTGAATGGTTTCAACTTTAACCAATCTCTGCTAGCTGCTGATGGACAG 42121
|||||||||||| | ||||||||||| || || |||||| | | | | | | |
Sbjct 3563 ATGGCTTTCAACCTAAATGGTTTCAATTTCAATCAATCTGTAGTTGACAGTCAGAGTCGT 3622
Query 42122 GTGATCAACACCTGGGCTGACATTCTTAACCGTGCCAACCTTGGCTTTGAGGTGATGCAT 42181
|| || ||||| ||| |||| || || ||||| |||||||| | || || ||||||
Sbjct 3623 GTAATTAACACTTGGACTGATATATATATACGTGCTAACCTTGGTATGGAAGTTATGCAT 3682
Query 42182 GAGCGGAACGCACACAACTTCCCGCTTGACCTTGC 42216
|| || || || || |||||||| || ||||| ||
Sbjct 3683 GAACGTAATGCTCATAACTTCCCTCTAGACCTAGC 3717
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 146139756634960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |