Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21]
42,990 sequences; 724,284,658 total letters
Query= NC_020867.1
Length=44892
Score E
Sequences producing significant alignments: (Bits) Value
seq11014 178 4e-40
seq20193 174 5e-39
seq31657 114 4e-21
seq46 109 2e-19
seq24530 105 2e-18
seq25757 104 7e-18
seq18686 96.9 1e-15
>seq11014
Length=29319
Score = 178 bits (196), Expect = 4e-40
Identities = 288/409 (70%), Gaps = 8/409 (2%)
Strand=Plus/Plus
Query 42310 ACTAACAACCGTCTTTATGTTGGGTGGTTTGGTGTGCTGATGATTCCCTGTCTGCTCG-C 42368
||| | ||||||||||| |||| |||||||||| ||||||| |||| || | | |
Sbjct 10057 ACTGAAAACCGTCTTTACATTGGACGGTTTGGTGTTTTGATGAT-CCCTACCTTATTGAC 10115
Query 42369 TGCTACCACCTGT-TTTATTGTCGCTTTCATTGCTGCCCCTCCGGTAGACATTGATGGCA 42427
|| || | ||| |||||| | || ||||||| ||| ||||| |||||||||||||| |
Sbjct 10116 GGCWACTTC-TGTATTTATTATTGCCTTCATTGTTGCTCCTCCAGTAGACATTGATGGTA 10174
Query 42428 TTCGTGAACCTGTCTCTGGCTCTCTTCTGTATGGCAACAACATCATCTCTGGTGCCGTCG 42487
|| |||||||||| || || ||||| || || || |||||||| || || |||||| |
Sbjct 10175 TTGGTGAACCTGTTTCAGGGTCTCTACTTTACGGAAACAACATTATTTCCGGTGCCATTA 10234
Query 42488 TGCCTAGCAGTAACGCAATTGGACTACATTTGTATTCGATCTGGGAAGCCAATACCCTTG 42547
| |||| | || || || ||||||| || | ||||||||||| || |||
Sbjct 10235 TTCCTACTTCTGCAGCTATAGGTTTACATTTTTACCCAATCTGGGAAGCGGCATCCGTTG 10294
Query 42548 ACGAATGGCTCTACAATGGCGGACCTTATCAGCTCGTCGTGTTCCACTTCCTTATCG--G 42605
| |||||| | | ||| || || |||||| | || | || | |||||| | | | |
Sbjct 10295 ATGAATGGTTATTCAACGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGCG 10354
Query 42606 TATCTTCTCTTACTTGGGACGCGAATGGGAACTTTCGTACCGACTTGGGATGAGGCCCTG 42665
|| || | |||| |||| | || ||||| ||| | ||| | || ||| | || ||
Sbjct 10355 TAGCT--TGTTACATGGGTCRTGAGTGGGAGCTTAGCTTCCGTSTRGGTATGCGACCTTG 10412
Query 42666 GATCTTTGTTGCTTACTCTGCCCCTGTGGCTGCAGCGACTGCAGTCTTC 42714
||| |||||| || || || | ||| || | || || ||||| |||
Sbjct 10413 GATTGCTGTTGCATATTCAGCTCTTGTTGCAGTTGCTACCGCAGTTTTC 10461
>seq20193
Length=7469
Score = 174 bits (192), Expect = 5e-39
Identities = 324/476 (68%), Gaps = 29/476 (6%)
Strand=Plus/Minus
Query 42294 TAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTTGGTGTGCTGATGAT 42353
||||||| | ||| ||| | ||||||||||| |||| ||||||||||| |||||||
Sbjct 6831 TAACTGGATAACTAGCACTGA-AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGAT 6773
Query 42354 TCCCTGTCTGCTCGCTGCTACCACCTGT-TTTATTGTCGCTTTCATTGCTGCCCCTCCGG 42412
| || || | | | | | ||| |||||| | || ||||||||||| ||||| |
Sbjct 6772 -CTCTACCTTATTGACGGCAACTTYTGTATTTATTATTGCCTTCATTGCTGCTCCTCCAG 6714
Query 42413 TAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGTATGGCAACAACATCA 42472
||||||||||||| |||||||||||||| || || ||||| || | || |||||||| |
Sbjct 6713 TAGACATTGATGGTATTCGTGAACCTGTTTCAGGGTCTCTACTTHACGGAAACAACATTA 6654
Query 42473 TCTCTGGTGCCGTCGTGCCTAGCAGTAACGCAATTGGACTACATTTGTATTCGATCTGGG 42532
| || |||||| | | |||| | || || || ||||||| || | |||||||
Sbjct 6653 TTTCCGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTACATTTTTACCCAATCTGGG 6594
Query 42533 AAGCCAATACCCTTGACGAATGGCTCTACAATGGCGGACCTTATCAGCTCGTCGTGTTCC 42592
|||| | || |||| |||||| | ||||| | || |||||| | || | || | |
Sbjct 6593 AAGCGACATCCGTTGATGAATGGTTATACAACGRTGGTCCTTATGAACTAATTGTTCTAC 6534
Query 42593 ACTTCCTTATCG--GTATCTTCTCTTACTTGGGACGCGAATGGGAACTTTCGTACCGACT 42650
||||| | | | ||| || | |||| |||| || || ||||| ||| | || ||
Sbjct 6533 ACTTCTTACTTGGCGTAGCT--TGTTACATGGGTCGTGAGTGGGAGCTTAGCTTCCATCT 6476
Query 42651 TGGGATGAGGCCCTGGAT--------------CTT--------TGTTGCTTACTCTGCCC 42688
|| ||| || ||||| ||| |||||| || || || |
Sbjct 6475 GGGTATGCAACCTTGGATTGCTGGGTATGCAACTTTGGATTGCTGTTGCATATTCAGCTC 6416
Query 42689 CTGTGGCTGCAGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGCAAGGTTCTTTT 42744
|||| || || || || ||||| ||| | |||| ||| |||| |||| | ||||
Sbjct 6415 CTGTTGCAGCTGCTACCGCAGTTTTCTTAATCTACCCAATTGGTCAAGTATTTTTT 6360
>seq31657
Length=14304
Score = 114 bits (126), Expect = 4e-21
Identities = 113/147 (77%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 42691 GTGGCTGCAGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGCAAGGTTCTTTTTCAGAT 42750
|| || || || || ||||| ||| | |||| ||| | || ||||| |||||| |||
Sbjct 282 GTTGCAGCTGCTACCGCAGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGAT 341
Query 42751 GGAATGCCTCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAACAT 42810
|| |||||||| || || || ||||| ||||| |||||| | | ||||||||||||||
Sbjct 342 GGTATGCCTCTAGGAATCTCTGGTACTTTCAATTTCATGATTVTATTCCAGGCTGAACAC 401
Query 42811 AACATTCTTATGCATCCTTTCCATATG 42837
||||| |||||||| || || || |||
Sbjct 402 AACATCCTTATGCACCCATTTCACATG 428
>seq46
Length=65133
Score = 109 bits (120), Expect = 2e-19
Identities = 152/212 (72%), Gaps = 7/212 (3%)
Strand=Plus/Plus
Query 43037 ATAATAGTCGCTCT---TTGCACTTCTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGT 43093
|| |||| ||||| || |||||||| | || ||||||||||| || || || ||||
Sbjct 51944 ATCATAGCCGCTCAGGGTTACACTTCTTCCGAGCTGCTTGGCCCGTAGTAGGTATCTGGT 52003
Query 43094 TCACTTCTCTTGGCGTCAGTACTATGGCGTTTAACTTGAATGGTTTTAACTTTAACCAAT 43153
| || || | || |||| |||||| || | | | |||||||| || || |||||||
Sbjct 52004 TTACCGCTTTAGGTATCAGCGCTATGGGTTTCACCCTAAATGGTTTCAATTTCAACCAAT 52063
Query 43154 CACTTGTTGATAATCAGAATCATGTCATCCCTACTTGGGCTGATATTT----TGAATCGT 43209
| | ||||||| |||| |||||| || |||||||| ||||| | | || |||
Sbjct 52064 CTGTAGTTGATAGTCAGTGTCATGTAATTAACACTTGGGCCGATATGTATCATCAACCGT 52123
Query 43210 GCCAACCTTGGCTTTGAGGTGATGCACGAGCG 43241
|| |||||||| | || || ||||| || ||
Sbjct 52124 GCTAACCTTGGTATGGAAGTTATGCATGAACG 52155
>seq24530
Length=26533
Score = 105 bits (116), Expect = 2e-18
Identities = 177/257 (69%), Gaps = 0/257 (0%)
Strand=Plus/Minus
Query 42771 CGGTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAACATAACATTCTTATGCATCCTTT 42830
|||||| ||||| |||||| | || ||||||||||| || ||||| |||||||| || ||
Sbjct 796 CGGTACTTTCAATTTCATGATTGTATTCCAGGCTGAVCACAACATCCTTATGCACCCATT 737
Query 42831 CCATATGCTTGGTGTTGCCGGCGTATTTGGTGGGTCGTTGTTCTCAGCTATGCATGGTAG 42890
|| || | || | || || ||| | || || | ||| ||||||||| |
Sbjct 736 TCACATCTTAGGCCTAGCTGGTGTAAAATGCGGCTCCCTATTCAGTACTATGCATGCTTC 677
Query 42891 TCTTGTCACCTCTTCTCTTGTGCGTGAAACGACTGAAAACGAAAGCCAAAATTATGGCTA 42950
|||| || ||| | || | | |||| || |||| ||| ||| | || ||
Sbjct 676 ATTTGTAACTTCTAGTTTTATAAGGGAAAGCACATAAAATGAATCTGCTAATGAAGGTTA 617
Query 42951 CAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCATGGTTACTTTGGACG 43010
|| |||| ||||||||| || ||||| || || || || | |||| ||| ||||| |
Sbjct 616 CAGATTCGATCAAGAGGAAGAAACTTAGAATATCGTAGCCGATCATGCTTATTTTGGCTG 557
Query 43011 GCTTATCTTCCAATATG 43027
| |||||||||||||
Sbjct 556 ATTGATCTTCCAATATG 540
>seq25757
Length=3733
Score = 104 bits (114), Expect = 7e-18
Identities = 117/157 (75%), Gaps = 0/157 (0%)
Strand=Plus/Plus
Query 43115 CTATGGCGTTTAACTTGAATGGTTTTAACTTTAACCAATCACTTGTTGATAATCAGAATC 43174
||||||| || ||| | |||||||| || || || ||||| | ||||| | ||||| ||
Sbjct 3561 CTATGGCTTTCAACCTAAATGGTTTCAATTTCAATCAATCTGTAGTTGACAGTCAGAGTC 3620
Query 43175 ATGTCATCCCTACTTGGGCTGATATTTTGAATCGTGCCAACCTTGGCTTTGAGGTGATGC 43234
||| || |||||| ||||||| | | ||||| |||||||| | || || ||||
Sbjct 3621 GTGTAATTAACACTTGGACTGATATATATATACGTGCTAACCTTGGTATGGAAGTTATGC 3680
Query 43235 ACGAGCGGAATGCACATAACTTCCCGCTTGATCTTGC 43271
| || || ||||| ||||||||||| || || || ||
Sbjct 3681 ATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGC 3717
>seq18686
Length=60695
Score = 96.9 bits (106), Expect = 1e-15
Identities = 83/103 (81%), Gaps = 0/103 (0%)
Strand=Plus/Minus
Query 42391 GCTTTCATTGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCT 42450
|| ||||||||||| |||| |||||||||||||| |||||||||||||| || || |||
Sbjct 6048 GCCTTCATTGCTGCTCCTCTAGTAGACATTGATGGTATTCGTGAACCTGTTTCAGGGTCT 5989
Query 42451 CTTCTGTATGGCAACAACATCATCTCTGGTGCCGTCGTGCCTA 42493
|| || | || |||||||| || || ||| |||| | ||||
Sbjct 5988 CTACTTAACGGAAACAACATTATTTCCGGTTCCGTTATTCCTA 5946
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 143459525608520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |