Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21] 42,990 sequences; 724,284,658 total letters Query= NC_020867.1 Length=44892 Score E Sequences producing significant alignments: (Bits) Value seq11014 178 4e-40 seq20193 174 5e-39 seq31657 114 4e-21 seq46 109 2e-19 seq24530 105 2e-18 seq25757 104 7e-18 seq18686 96.9 1e-15 >seq11014 Length=29319 Score = 178 bits (196), Expect = 4e-40 Identities = 288/409 (70%), Gaps = 8/409 (2%) Strand=Plus/Plus Query 42310 ACTAACAACCGTCTTTATGTTGGGTGGTTTGGTGTGCTGATGATTCCCTGTCTGCTCG-C 42368 ||| | ||||||||||| |||| |||||||||| ||||||| |||| || | | | Sbjct 10057 ACTGAAAACCGTCTTTACATTGGACGGTTTGGTGTTTTGATGAT-CCCTACCTTATTGAC 10115 Query 42369 TGCTACCACCTGT-TTTATTGTCGCTTTCATTGCTGCCCCTCCGGTAGACATTGATGGCA 42427 || || | ||| |||||| | || ||||||| ||| ||||| |||||||||||||| | Sbjct 10116 GGCWACTTC-TGTATTTATTATTGCCTTCATTGTTGCTCCTCCAGTAGACATTGATGGTA 10174 Query 42428 TTCGTGAACCTGTCTCTGGCTCTCTTCTGTATGGCAACAACATCATCTCTGGTGCCGTCG 42487 || |||||||||| || || ||||| || || || |||||||| || || |||||| | Sbjct 10175 TTGGTGAACCTGTTTCAGGGTCTCTACTTTACGGAAACAACATTATTTCCGGTGCCATTA 10234 Query 42488 TGCCTAGCAGTAACGCAATTGGACTACATTTGTATTCGATCTGGGAAGCCAATACCCTTG 42547 | |||| | || || || ||||||| || | ||||||||||| || ||| Sbjct 10235 TTCCTACTTCTGCAGCTATAGGTTTACATTTTTACCCAATCTGGGAAGCGGCATCCGTTG 10294 Query 42548 ACGAATGGCTCTACAATGGCGGACCTTATCAGCTCGTCGTGTTCCACTTCCTTATCG--G 42605 | |||||| | | ||| || || |||||| | || | || | |||||| | | | | Sbjct 10295 ATGAATGGTTATTCAACGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGCG 10354 Query 42606 TATCTTCTCTTACTTGGGACGCGAATGGGAACTTTCGTACCGACTTGGGATGAGGCCCTG 42665 || || | |||| |||| | || ||||| ||| | ||| | || ||| | || || Sbjct 10355 TAGCT--TGTTACATGGGTCRTGAGTGGGAGCTTAGCTTCCGTSTRGGTATGCGACCTTG 10412 Query 42666 GATCTTTGTTGCTTACTCTGCCCCTGTGGCTGCAGCGACTGCAGTCTTC 42714 ||| |||||| || || || | ||| || | || || ||||| ||| Sbjct 10413 GATTGCTGTTGCATATTCAGCTCTTGTTGCAGTTGCTACCGCAGTTTTC 10461 >seq20193 Length=7469 Score = 174 bits (192), Expect = 5e-39 Identities = 324/476 (68%), Gaps = 29/476 (6%) Strand=Plus/Minus Query 42294 TAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTTGGTGTGCTGATGAT 42353 ||||||| | ||| ||| | ||||||||||| |||| ||||||||||| ||||||| Sbjct 6831 TAACTGGATAACTAGCACTGA-AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGAT 6773 Query 42354 TCCCTGTCTGCTCGCTGCTACCACCTGT-TTTATTGTCGCTTTCATTGCTGCCCCTCCGG 42412 | || || | | | | | ||| |||||| | || ||||||||||| ||||| | Sbjct 6772 -CTCTACCTTATTGACGGCAACTTYTGTATTTATTATTGCCTTCATTGCTGCTCCTCCAG 6714 Query 42413 TAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGTATGGCAACAACATCA 42472 ||||||||||||| |||||||||||||| || || ||||| || | || |||||||| | Sbjct 6713 TAGACATTGATGGTATTCGTGAACCTGTTTCAGGGTCTCTACTTHACGGAAACAACATTA 6654 Query 42473 TCTCTGGTGCCGTCGTGCCTAGCAGTAACGCAATTGGACTACATTTGTATTCGATCTGGG 42532 | || |||||| | | |||| | || || || ||||||| || | ||||||| Sbjct 6653 TTTCCGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTACATTTTTACCCAATCTGGG 6594 Query 42533 AAGCCAATACCCTTGACGAATGGCTCTACAATGGCGGACCTTATCAGCTCGTCGTGTTCC 42592 |||| | || |||| |||||| | ||||| | || |||||| | || | || | | Sbjct 6593 AAGCGACATCCGTTGATGAATGGTTATACAACGRTGGTCCTTATGAACTAATTGTTCTAC 6534 Query 42593 ACTTCCTTATCG--GTATCTTCTCTTACTTGGGACGCGAATGGGAACTTTCGTACCGACT 42650 ||||| | | | ||| || | |||| |||| || || ||||| ||| | || || Sbjct 6533 ACTTCTTACTTGGCGTAGCT--TGTTACATGGGTCGTGAGTGGGAGCTTAGCTTCCATCT 6476 Query 42651 TGGGATGAGGCCCTGGAT--------------CTT--------TGTTGCTTACTCTGCCC 42688 || ||| || ||||| ||| |||||| || || || | Sbjct 6475 GGGTATGCAACCTTGGATTGCTGGGTATGCAACTTTGGATTGCTGTTGCATATTCAGCTC 6416 Query 42689 CTGTGGCTGCAGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGCAAGGTTCTTTT 42744 |||| || || || || ||||| ||| | |||| ||| |||| |||| | |||| Sbjct 6415 CTGTTGCAGCTGCTACCGCAGTTTTCTTAATCTACCCAATTGGTCAAGTATTTTTT 6360 >seq31657 Length=14304 Score = 114 bits (126), Expect = 4e-21 Identities = 113/147 (77%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 42691 GTGGCTGCAGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGCAAGGTTCTTTTTCAGAT 42750 || || || || || ||||| ||| | |||| ||| | || ||||| |||||| ||| Sbjct 282 GTTGCAGCTGCTACCGCAGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGAT 341 Query 42751 GGAATGCCTCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAACAT 42810 || |||||||| || || || ||||| ||||| |||||| | | |||||||||||||| Sbjct 342 GGTATGCCTCTAGGAATCTCTGGTACTTTCAATTTCATGATTVTATTCCAGGCTGAACAC 401 Query 42811 AACATTCTTATGCATCCTTTCCATATG 42837 ||||| |||||||| || || || ||| Sbjct 402 AACATCCTTATGCACCCATTTCACATG 428 >seq46 Length=65133 Score = 109 bits (120), Expect = 2e-19 Identities = 152/212 (72%), Gaps = 7/212 (3%) Strand=Plus/Plus Query 43037 ATAATAGTCGCTCT---TTGCACTTCTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGT 43093 || |||| ||||| || |||||||| | || ||||||||||| || || || |||| Sbjct 51944 ATCATAGCCGCTCAGGGTTACACTTCTTCCGAGCTGCTTGGCCCGTAGTAGGTATCTGGT 52003 Query 43094 TCACTTCTCTTGGCGTCAGTACTATGGCGTTTAACTTGAATGGTTTTAACTTTAACCAAT 43153 | || || | || |||| |||||| || | | | |||||||| || || ||||||| Sbjct 52004 TTACCGCTTTAGGTATCAGCGCTATGGGTTTCACCCTAAATGGTTTCAATTTCAACCAAT 52063 Query 43154 CACTTGTTGATAATCAGAATCATGTCATCCCTACTTGGGCTGATATTT----TGAATCGT 43209 | | ||||||| |||| |||||| || |||||||| ||||| | | || ||| Sbjct 52064 CTGTAGTTGATAGTCAGTGTCATGTAATTAACACTTGGGCCGATATGTATCATCAACCGT 52123 Query 43210 GCCAACCTTGGCTTTGAGGTGATGCACGAGCG 43241 || |||||||| | || || ||||| || || Sbjct 52124 GCTAACCTTGGTATGGAAGTTATGCATGAACG 52155 >seq24530 Length=26533 Score = 105 bits (116), Expect = 2e-18 Identities = 177/257 (69%), Gaps = 0/257 (0%) Strand=Plus/Minus Query 42771 CGGTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAACATAACATTCTTATGCATCCTTT 42830 |||||| ||||| |||||| | || ||||||||||| || ||||| |||||||| || || Sbjct 796 CGGTACTTTCAATTTCATGATTGTATTCCAGGCTGAVCACAACATCCTTATGCACCCATT 737 Query 42831 CCATATGCTTGGTGTTGCCGGCGTATTTGGTGGGTCGTTGTTCTCAGCTATGCATGGTAG 42890 || || | || | || || ||| | || || | ||| ||||||||| | Sbjct 736 TCACATCTTAGGCCTAGCTGGTGTAAAATGCGGCTCCCTATTCAGTACTATGCATGCTTC 677 Query 42891 TCTTGTCACCTCTTCTCTTGTGCGTGAAACGACTGAAAACGAAAGCCAAAATTATGGCTA 42950 |||| || ||| | || | | |||| || |||| ||| ||| | || || Sbjct 676 ATTTGTAACTTCTAGTTTTATAAGGGAAAGCACATAAAATGAATCTGCTAATGAAGGTTA 617 Query 42951 CAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCATGGTTACTTTGGACG 43010 || |||| ||||||||| || ||||| || || || || | |||| ||| ||||| | Sbjct 616 CAGATTCGATCAAGAGGAAGAAACTTAGAATATCGTAGCCGATCATGCTTATTTTGGCTG 557 Query 43011 GCTTATCTTCCAATATG 43027 | ||||||||||||| Sbjct 556 ATTGATCTTCCAATATG 540 >seq25757 Length=3733 Score = 104 bits (114), Expect = 7e-18 Identities = 117/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 43115 CTATGGCGTTTAACTTGAATGGTTTTAACTTTAACCAATCACTTGTTGATAATCAGAATC 43174 ||||||| || ||| | |||||||| || || || ||||| | ||||| | ||||| || Sbjct 3561 CTATGGCTTTCAACCTAAATGGTTTCAATTTCAATCAATCTGTAGTTGACAGTCAGAGTC 3620 Query 43175 ATGTCATCCCTACTTGGGCTGATATTTTGAATCGTGCCAACCTTGGCTTTGAGGTGATGC 43234 ||| || |||||| ||||||| | | ||||| |||||||| | || || |||| Sbjct 3621 GTGTAATTAACACTTGGACTGATATATATATACGTGCTAACCTTGGTATGGAAGTTATGC 3680 Query 43235 ACGAGCGGAATGCACATAACTTCCCGCTTGATCTTGC 43271 | || || ||||| ||||||||||| || || || || Sbjct 3681 ATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGC 3717 >seq18686 Length=60695 Score = 96.9 bits (106), Expect = 1e-15 Identities = 83/103 (81%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 42391 GCTTTCATTGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCT 42450 || ||||||||||| |||| |||||||||||||| |||||||||||||| || || ||| Sbjct 6048 GCCTTCATTGCTGCTCCTCTAGTAGACATTGATGGTATTCGTGAACCTGTTTCAGGGTCT 5989 Query 42451 CTTCTGTATGGCAACAACATCATCTCTGGTGCCGTCGTGCCTA 42493 || || | || |||||||| || || ||| |||| | |||| Sbjct 5988 CTACTTAACGGAAACAACATTATTTCCGGTTCCGTTATTCCTA 5946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143459525608520