Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21] 42,990 sequences; 724,284,658 total letters Query= NC_020874.1 Length=46198 Score E Sequences producing significant alignments: (Bits) Value seq11014 152 2e-32 seq20193 143 8e-30 seq31657 116 1e-21 seq46 96.9 1e-15 seq25757 91.5 4e-14 seq3149 82.4 2e-11 >seq11014 Length=29319 Score = 152 bits (168), Expect = 2e-32 Identities = 267/383 (70%), Gaps = 6/383 (2%) Strand=Plus/Minus Query 26462 GCTGTATATGCAACAAATATCCATGGTCTCATTCCTAGTCTGTAAGATA-GTTCCCACTG 26520 |||| |||||||||| ||||| |||| ||| || | | | ||| || | ||||||| Sbjct 10433 GCTGAATATGCAACAGCAATCCAAGGTCGCATACCYASACGG-AAGCTAAGCTCCCACTC 10375 Query 26521 TCTCCCTGCATATGCTGCTACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCC 26580 || || ||||| || | ||||||||| | | ||| |||| ||| || || Sbjct 10374 AYGACCCATGTAACAAGCTACGCCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACC 10315 Query 26581 GCCATTGTATAGCCACTCGTCCAGTG-TGCCAGCTTCCCAGATCGGGTAAAAATGTAGTC 26639 || ||| ||| ||| || || | | |||| ||||||||||| ||||||||||||| | Sbjct 10314 ACCGTTGAATAACCATTCATCAACGGATGCC-GCTTCCCAGATTGGGTAAAAATGTAAAC 10256 Query 26640 CGATTGCGTTAGAGGAGGGGACGACTGCTCCTGATATTATATTGTTTCCGTACATTAACG 26699 | || || ||| | || | | || || || || || ||||||||||| | || | Sbjct 10255 CTATAGCTGCAGAAGTAGGAATAATGGCACCGGAAATAATGTTGTTTCCGTAAAGTAGAG 10196 Query 26700 AGCCGGAAACTGGCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATGAAGGCAA 26759 | || ||||| || |||| || ||||| || ||||| || || || | |||||||||| Sbjct 10195 ACCCTGAAACAGGTTCACCAATACCATCAATGTCTACTGGAGGAGCAACAATGAAGGCAA 10136 Query 26760 GTATAAA-ACATGTAGTGGCTGCGAGTAAGCAGGGTATCATAAGCACCCCGAACCATCCC 26818 ||||| ||| | ||| || | | |||| || ||||| | || || |||| ||| Sbjct 10135 TAATAAATACA-GAAGTWGCCGTCAATAAGGTAGGGATCATCAAAACACCAAACCGTCCA 10077 Query 26819 ACATAGAGACGGTTCTCAGTACT 26841 | || |||||||| ||||| || Sbjct 10076 ATGTAAAGACGGTTTTCAGTGCT 10054 >seq20193 Length=7469 Score = 143 bits (158), Expect = 8e-30 Identities = 224/316 (71%), Gaps = 5/316 (2%) Strand=Plus/Plus Query 26537 GCTACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGCCAC 26596 ||||| || | ||||||||| | | ||| |||| ||| || || | ||||||| ||| Sbjct 6515 GCTACGCCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCAYCGTTGTATAACCAT 6574 Query 26597 TCGTCCAGTG-TGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAGGA 26655 || || | | || | ||||||||||| ||||||||||||| || || || ||| | Sbjct 6575 TCATCAACGGATGTC-GCTTCCCAGATTGGGTAAAAATGTAAACCTATAGCTGCAGAAGT 6633 Query 26656 GGGGACGACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGCTC 26715 || | | || || || || || |||||||||| | || || || ||||| || || Sbjct 6634 AGGAATAATGGCACCGGAAATAATGTTGTTTCCGTDAAGTAGAGACCCTGAAACAGGTTC 6693 Query 26716 ACGTATGCCATCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAA-ACATGTAG 26774 ||| || ||||| || ||||| || || || || |||||||||| ||||| ||| || Sbjct 6694 ACGAATACCATCAATGTCTACTGGAGGAGCAGCAATGAAGGCAATAATAAATACA-RAAG 6752 Query 26775 TGGCTGCGAGTAAGCAGGGTATCATAAGCACCCCGAACCATCCCACATAGAGACGGTTCT 26834 | || | | |||| | ||||| | || || |||||||| | || |||||||| | Sbjct 6753 TTGCCGTCAATAAGGTAGAGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTT-T 6811 Query 26835 CAGTACTTGTAACCCA 26850 |||| || || | ||| Sbjct 6812 CAGTGCTAGTTATCCA 6827 >seq31657 Length=14304 Score = 116 bits (128), Expect = 1e-21 Identities = 110/141 (78%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 26311 CATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAATACGAACATAAAGTTAAA 26370 ||| || ||||||||||| || || || ||||| || ||||||| | ||| || || || Sbjct 428 CATGTGAAATGGGTGCATAAGGATGTTGTGTTCAGCCTGGAATABAATCATGAAATTGAA 369 Query 26371 AGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCTTGTCCGAAAGGATAAAC 26430 |||||||||||| || |||||||| |||||| |||||| ||||| |||| || || | Sbjct 368 AGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCGATTGGGTAGAT 309 Query 26431 TAAGAACACTGCGAGAGCTGC 26451 ||||| |||||| ||| || Sbjct 308 CAAGAAAACTGCGGTAGCAGC 288 >seq46 Length=65133 Score = 96.9 bits (106), Expect = 1e-15 Identities = 141/195 (72%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 25905 TACGCTCGTGCATAACTTCAAAGCCGAGGTTAGCTCGGTTTA--ATACAT--CAGCCCAT 25960 |||| || ||||||||||| | || |||||||| ||||| | |||||| | ||||| Sbjct 52157 TACGTTCATGCATAACTTCCATACCAAGGTTAGCACGGTTGATGATACATATCGGCCCAA 52098 Query 25961 GTAGGTATTATCTTTCCATTAAC-ATCTACTACTGACTGGTTAAAGTTAAAACCATTTAG 26019 || |||| | | || | || ||| ||||| || ||||| || || ||||||||||| Sbjct 52097 GTGTTAATTA-CATGACACTGACTATCAACTACAGATTGGTTGAAATTGAAACCATTTAG 52039 Query 26020 GTTAAATGCCATTGTGCAGATACCCATAGATGTCAGCCATATGCCAACAACCGGCCAAGT 26079 | | || |||| | || |||||| | || || | ||| || || || || ||||||| Sbjct 52038 GGTGAAACCCATAGCGCTGATACCTAAAGCGGTAAACCAGATACCTACTACGGGCCAAGC 51979 Query 26080 AGCAAGAAAGAAATG 26094 ||| | ||||| || Sbjct 51978 AGCTCGGAAGAAGTG 51964 >seq25757 Length=3733 Score = 91.5 bits (100), Expect = 4e-14 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936 |||| ||| || || ||||||||||||||||| || ||||||||||| | || |||||| Sbjct 3717 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 3658 Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTACTGAC 25996 || || | ||| ||||| ||| || |||| | | | || ||||| || Sbjct 3657 GCACGTATATATATATCAGTCCAAGTGTTAATTACACGACTCTGACTGTCAACTACAGAT 3598 Query 25997 TGGTTAAAGTTAAAACCATTTAGGTTAAATGCCAT 26031 || || || || |||||||||||||| || ||||| Sbjct 3597 TGATTGAAATTGAAACCATTTAGGTTGAAAGCCAT 3563 >seq3149 Length=150756 Score = 82.4 bits (90), Expect = 2e-11 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 26344 TGCTTGGAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACT 26403 || ||||||||| | ||| | || |||||||||||||| || |||||||| |||||| Sbjct 11696 TGGTTGGAATACAATCATGTAATTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGA 11637 Query 26404 AAAACTCCCTTGTCCGAAAGGATAAACTAAGAACACTGCG 26443 |||||| |||| |||| || || | ||||| |||||| Sbjct 11636 AAAACTTCCTTAACCGATTGGGTAGATCAAGAATACTGCG 11597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147636592100800