Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21] 42,990 sequences; 724,284,658 total letters Query= NC_020875.1 Length=182801 Score E Sequences producing significant alignments: (Bits) Value seq11014 174 2e-38 seq20193 158 1e-33 seq24530 109 6e-19 seq31657 107 2e-18 seq25757 104 3e-17 seq18686 95.1 1e-14 seq46 95.1 1e-14 seq8181 89.7 6e-13 seq20218 82.4 9e-11 >seq11014 Length=29319 Score = 174 bits (192), Expect = 2e-38 Identities = 263/376 (70%), Gaps = 0/376 (0%) Strand=Plus/Plus Query 154991 CTGACAACCGCATCTATGTCGGTTGGTTCGGTGTTCTTATGATCCCTTGCCTCCTCGCTG 155050 |||| ||||| | || | || |||| |||||| | ||||||||| | | | | | Sbjct 10058 CTGAAAACCGTCTTTACATTGGACGGTTTGGTGTTTTGATGATCCCTACCTTATTGACGG 10117 Query 155051 CTGCTACATGCTTCATTGTCGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGTATTC 155110 | || | || ||| | |||||||||| ||| ||||| |||||||||||||||||| Sbjct 10118 CWACTTCTGTATTTATTATTGCCTTCATTGTTGCTCCTCCAGTAGACATTGATGGTATTG 10177 Query 155111 GTGAACCCGTCGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCC 155170 ||||||| || | || ||| || | || || |||||||| || || ||||| || | | Sbjct 10178 GTGAACCTGTTTCAGGGTCTCTACTTTACGGAAACAACATTATTTCCGGTGCCATTATTC 10237 Query 155171 CTAGTTCAAACGCAATTGGTCTCCACTTCTATCCTATTTGGGAAGCAGCAACTCTTGATG 155230 ||| ||| || || ||| | || || || || || |||||||| ||| | |||||| Sbjct 10238 CTACTTCTGCAGCTATAGGTTTACATTTTTACCCAATCTGGGAAGCGGCATCCGTTGATG 10297 Query 155231 AGTGGTTGTACAATGGTGGTCCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCA 155290 | ||||| | ||| |||||||||| |||| | || | |||||| | | || | Sbjct 10298 AATGGTTATTCAACGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGCGTAG 10357 Query 155291 CAGCATACTGTGGTCGTCAGTGGGAACTTTCTTACCGTCTTGGCATGCGTCCTTGGATCT 155350 | ||| |||| | ||||||| ||| | |||| | || ||||| |||||||| Sbjct 10358 CTTGTTACATGGGTCRTGAGTGGGAGCTTAGCTTCCGTSTRGGTATGCGACCTTGGATTG 10417 Query 155351 GTGTTGCATACTCTGC 155366 ||||||||| || || Sbjct 10418 CTGTTGCATATTCAGC 10433 >seq20193 Length=7469 Score = 158 bits (174), Expect = 1e-33 Identities = 257/371 (69%), Gaps = 1/371 (0%) Strand=Plus/Minus Query 154978 TGGGTAACTTCTGCTGACAACCGCATCTATGTCGGTTGGTTCGGTGTTCTTATGATCCCT 155037 ||| ||||| |||| ||||| | || | || ||||| |||||| | |||||| || Sbjct 6827 TGGATAACTAGCACTGA-AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCTCT 6769 Query 155038 TGCCTCCTCGCTGCTGCTACATGCTTCATTGTCGCCTTCATTGCTGCACCTCCTGTAGAC 155097 | | | | || || || ||| | |||||||||||||| ||||| |||||| Sbjct 6768 ACCTTATTGACGGCAACTTYTGTATTTATTATTGCCTTCATTGCTGCTCCTCCAGTAGAC 6709 Query 155098 ATTGATGGTATTCGTGAACCCGTCGCTGGTTCTTTAATGTATGGTAACAACATCATCTCT 155157 |||||||||||||||||||| || | || ||| || | | || |||||||| || || Sbjct 6708 ATTGATGGTATTCGTGAACCTGTTTCAGGGTCTCTACTTHACGGAAACAACATTATTTCC 6649 Query 155158 GGTGCTGTTGTCCCTAGTTCAAACGCAATTGGTCTCCACTTCTATCCTATTTGGGAAGCA 155217 ||||| || | |||| ||| || || ||| | || || || || || |||||||| Sbjct 6648 GGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTACATTTTTACCCAATCTGGGAAGCG 6589 Query 155218 GCAACTCTTGATGAGTGGTTGTACAATGGTGGTCCTTTCCAACTTGTAGTCTTCCACTTC 155277 || | ||||||| ||||| ||||| | |||||||| |||| | || | |||||| Sbjct 6588 ACATCCGTTGATGAATGGTTATACAACGRTGGTCCTTATGAACTAATTGTTCTACACTTC 6529 Query 155278 CTTATCGGAATCACAGCATACTGTGGTCGTCAGTGGGAACTTTCTTACCGTCTTGGCATG 155337 | | || | | ||| |||||| ||||||| ||| | || ||| || ||| Sbjct 6528 TTACTTGGCGTAGCTTGTTACATGGGTCGTGAGTGGGAGCTTAGCTTCCATCTGGGTATG 6469 Query 155338 CGTCCTTGGAT 155348 | |||||||| Sbjct 6468 CAACCTTGGAT 6458 >seq24530 Length=26533 Score = 109 bits (120), Expect = 6e-19 Identities = 187/272 (69%), Gaps = 0/272 (0%) Strand=Plus/Minus Query 155452 GGTACTTTTAACTATATGTTCGTGTTCCAAGCAGAACACAATATCCTTATGCACCCCTTC 155511 |||||||| || | ||| | || ||||| || || ||||| |||||||||||||| || Sbjct 795 GGTACTTTCAATTTCATGATTGTATTCCAGGCTGAVCACAACATCCTTATGCACCCATTT 736 Query 155512 CACATGCTTGGAGTAGCAGGTGTGTTCGGTGGATCTCTTTTCTCTGCTATGCACGGTTCA 155571 ||||| | || |||| ||||| | || || || ||| | ||||||| | |||| Sbjct 735 CACATCTTAGGCCTAGCTGGTGTAAAATGCGGCTCCCTATTCAGTACTATGCATGCTTCA 676 Query 155572 TTGGTGACATCTTCACTAATCCGTGAAACTACTGAGCAAGAGTCTCAGAACTATGGTTAC 155631 || || || ||| | || | |||| || | | || ||| || | |||||| Sbjct 675 TTTGTAACTTCTAGTTTTATAAGGGAAAGCACATAAAATGAATCTGCTAATGAAGGTTAC 616 Query 155632 AAGTTCGGACAAGAAGAAGAAACTTATAACATTGTTGCTGCTCATGGATACTTCGGTCGT 155691 | |||| ||||| ||||||||||| || || || || | ||||| || || || | Sbjct 615 AGATTCGATCAAGAGGAAGAAACTTAGAATATCGTAGCCGATCATGCTTATTTTGGCTGA 556 Query 155692 CTTATCTTCCAGTATGCATCCTTCAACAACTC 155723 | |||||||| |||| || |||||||| Sbjct 555 TTGATCTTCCAATATGATAGTTTTAACAACTC 524 >seq31657 Length=14304 Score = 107 bits (118), Expect = 2e-18 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 155377 GCTGCGTTCGCTGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCGATG 155436 ||||| ||| || ||| | | || || |||||||||| ||| ||||||| ||| Sbjct 288 GCTGCTACCGCAGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATG 347 Query 155437 CCTCTTGGTATCTCTGGTACTTTTAACTATATGTTCGTGTTCCAAGCAGAACACAATATC 155496 ||||| || |||||||||||||| || | ||| | | ||||| || |||||||| ||| Sbjct 348 CCTCTAGGAATCTCTGGTACTTTCAATTTCATGATTVTATTCCAGGCTGAACACAACATC 407 Query 155497 CTTATGCACCCCTTCCACATG 155517 ||||||||||| || |||||| Sbjct 408 CTTATGCACCCATTTCACATG 428 >seq25757 Length=3733 Score = 104 bits (114), Expect = 3e-17 Identities = 121/162 (75%), Gaps = 6/162 (4%) Strand=Plus/Plus Query 155797 ATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTAGTAGACGCT---AGTGGT 155853 ||||| |||||||| || |||||||| ||||| || |||||||| ||| | ||| || Sbjct 3563 ATGGCTTTCAACCTAAATGGTTTCAATTTCAATCAATCTGTAGTTGACAGTCAGAGTCGT 3622 Query 155854 AAAGTCATCCCTACATGGGCAGACATTCTTAACCGCGCTGGTCTTGGTATGGAAGTAATG 155913 | | | | || ||| | || || || || ||| |||||||||||||| ||| Sbjct 3623 GTAATTAACACT---TGGACTGATATATATATACGTGCTAACCTTGGTATGGAAGTTATG 3679 Query 155914 CACGAGCGTAACGCTCACAACTTCCCTCTTGACCTTGCTGCT 155955 || || ||||| ||||| ||||||||||| ||||| |||||| Sbjct 3680 CATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGCTGCT 3721 >seq18686 Length=60695 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 5/125 (4%) Strand=Plus/Minus Query 155060 GCTTCATTGTC-----GCCTTCATTGCTGCACCTCCTGTAGACATTGATGGTATTCGTGA 155114 |||| |||||| |||||||||||||| |||| ||||||||||||||||||||||| Sbjct 6064 GCTTAATTGTCCCTCTGCCTTCATTGCTGCTCCTCTAGTAGACATTGATGGTATTCGTGA 6005 Query 155115 ACCCGTCGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCTAG 155174 ||| || | || ||| || | | || |||||||| || || ||| | ||| | |||| Sbjct 6004 ACCTGTTTCAGGGTCTCTACTTAACGGAAACAACATTATTTCCGGTTCCGTTATTCCTAC 5945 Query 155175 TTCAA 155179 || || Sbjct 5944 TTAAA 5940 >seq46 Length=65133 Score = 95.1 bits (104), Expect = 1e-14 Identities = 289/435 (66%), Gaps = 49/435 (11%) Strand=Plus/Plus Query 155497 CTTATGCACCCCTTCCACATGCTTGGAGTAGCAGGTGTGTTCGGTGGATCTCTT-TTCTC 155555 ||||||||||| || |||||| | ||| || || | | ||| | |||| ||| Sbjct 51764 CTTATGCACCCATTTCACATGTT------AGCTGGGGTATCAGTTGGCT-TCTTATTCAG 51816 Query 155556 TGCTATGCACGGTTCATTGGTGACATCTTCACTAATCCGTGAAACTACTGAGCAAGAGTC 155615 ||||||||| ||||| ||||| || ||| ||| | ||||| || || | || || Sbjct 51817 TGCTATGCATGGTTCCTTGGTAACTTCTAGTTCGATCAGGGAAACCACAGA--ATGAATC 51874 Query 155616 TCAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAAACTTATAACATTGTTGCTGCTCA 155675 | || | ||||||| ||||| || || ||||||||||| || || | || ||| Sbjct 51875 TGCTAATGAAGGTTACAGATTCGGTCA-GAGGAAGAAACTTAGAATATCATAGCCGCT-- 51931 Query 155676 TGGATACTTCGGTCGTCTTATCTTCCAGTATGCATCCTTCAACAACTCAAGAAGTCTTCA 155735 || |||| | | ||| ||| | | |||| | || | || Sbjct 51932 --GAAACTTAG---------------AATAT-CAT-----AGCCGCTCAGG--GT-TACA 51965 Query 155736 CTTCTTCCTTGCTGCATGGCCTGTGGTCTGCATCTGGGCAACTGCTATGGGTGTGTCAAC 155795 |||||||| ||||| ||||| || || | |||||| || ||| | ||| | || | Sbjct 51966 CTTCTTCCGAGCTGCTTGGCCCGTAGTAGGTATCTGGTTTACCGCTTTAGGTAT--CAGC 52023 Query 155796 G--ATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTAGTAGACGCT-AGTGG 155852 | |||| |||| ||| || |||||||| |||||||| |||||||| || | |||| Sbjct 52024 GCTATGGGTTTCACCCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAGTG- 52082 Query 155853 TAAAGTCATCCCTACATGGGCAGACAT---TCTT-AACCGCGCTGGTCTTGGTATGGAAG 155908 | | || || || ||||| || || || | ||||| ||| ||||||||||||| Sbjct 52083 TCATGTAATTAACACTTGGGCCGATATGTATCATCAACCGTGCTAACCTTGGTATGGAAG 52142 Query 155909 TAATGCACGAGCGTA 155923 | ||||| || |||| Sbjct 52143 TTATGCATGAACGTA 52157 >seq8181 Length=32328 Score = 89.7 bits (98), Expect = 6e-13 Identities = 183/272 (67%), Gaps = 0/272 (0%) Strand=Plus/Minus Query 155452 GGTACTTTTAACTATATGTTCGTGTTCCAAGCAGAACACAATATCCTTATGCACCCCTTC 155511 ||||||| || | ||| | | |||| || || |||| |||||||||||||| || Sbjct 12081 GGTACTTCCAATTTCATGATTCTATTCCTTGCTGAGTACAACATCCTTATGCACCCATTT 12022 Query 155512 CACATGCTTGGAGTAGCAGGTGTGTTCGGTGGATCTCTTTTCTCTGCTATGCACGGTTCA 155571 ||||| | || |||| |||| | || || || || | || |||||| | ||| Sbjct 12021 CACATCTTAGGCCTAGCTTGTGTAAAAAGCGGCTCCCTATTATGTGTTATGCATGCTTCC 11962 Query 155572 TTGGTGACATCTTCACTAATCCGTGAAACTACTGAGCAAGAGTCTCAGAACTATGGTTAC 155631 ||||| || ||| | ||| | ||||| || || | || ||| || | |||||| Sbjct 11961 TTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTAC 11902 Query 155632 AAGTTCGGACAAGAAGAAGAAACTTATAACATTGTTGCTGCTCATGGATACTTCGGTCGT 155691 | || || |||| |||||||| || || || || |||||| || || || || Sbjct 11901 AGATTTGGTTAAGAGGAAGAAACATAGAATATCGTAGCTGCTTATTCTTATTTTGGCAAA 11842 Query 155692 CTTATCTTCCAGTATGCATCCTTCAACAACTC 155723 | ||||| || ||||| ||||||||||| Sbjct 11841 TTAATCTTTCAATATGCTAGTTTCAACAACTC 11810 >seq20218 Length=9351 Score = 82.4 bits (90), Expect = 9e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 155866 ACATGGGCAGACATTCTTAACCGCGCTGGTCTTGGTATGGAAGTAATGCACGAGCGTAAC 155925 || |||| || || | ||||| ||| |||||||||||||| ||||| || ||||| Sbjct 2122 ACTTGGGTTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 2181 Query 155926 GCTCACAACTTCCCTCTTGACCTTGCTGCT 155955 ||||| ||||||||||| ||||| |||||| Sbjct 2182 GCTCATAACTTCCCTCTAGACCTAGCTGCT 2211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 584520924184400