Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21]
42,990 sequences; 724,284,658 total letters
Query= NC_020875.1
Length=182801
Score E
Sequences producing significant alignments: (Bits) Value
seq11014 174 2e-38
seq20193 158 1e-33
seq24530 109 6e-19
seq31657 107 2e-18
seq25757 104 3e-17
seq18686 95.1 1e-14
seq46 95.1 1e-14
seq8181 89.7 6e-13
seq20218 82.4 9e-11
>seq11014
Length=29319
Score = 174 bits (192), Expect = 2e-38
Identities = 263/376 (70%), Gaps = 0/376 (0%)
Strand=Plus/Plus
Query 154991 CTGACAACCGCATCTATGTCGGTTGGTTCGGTGTTCTTATGATCCCTTGCCTCCTCGCTG 155050
|||| ||||| | || | || |||| |||||| | ||||||||| | | | | |
Sbjct 10058 CTGAAAACCGTCTTTACATTGGACGGTTTGGTGTTTTGATGATCCCTACCTTATTGACGG 10117
Query 155051 CTGCTACATGCTTCATTGTCGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGTATTC 155110
| || | || ||| | |||||||||| ||| ||||| ||||||||||||||||||
Sbjct 10118 CWACTTCTGTATTTATTATTGCCTTCATTGTTGCTCCTCCAGTAGACATTGATGGTATTG 10177
Query 155111 GTGAACCCGTCGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCC 155170
||||||| || | || ||| || | || || |||||||| || || ||||| || | |
Sbjct 10178 GTGAACCTGTTTCAGGGTCTCTACTTTACGGAAACAACATTATTTCCGGTGCCATTATTC 10237
Query 155171 CTAGTTCAAACGCAATTGGTCTCCACTTCTATCCTATTTGGGAAGCAGCAACTCTTGATG 155230
||| ||| || || ||| | || || || || || |||||||| ||| | ||||||
Sbjct 10238 CTACTTCTGCAGCTATAGGTTTACATTTTTACCCAATCTGGGAAGCGGCATCCGTTGATG 10297
Query 155231 AGTGGTTGTACAATGGTGGTCCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCA 155290
| ||||| | ||| |||||||||| |||| | || | |||||| | | || |
Sbjct 10298 AATGGTTATTCAACGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGCGTAG 10357
Query 155291 CAGCATACTGTGGTCGTCAGTGGGAACTTTCTTACCGTCTTGGCATGCGTCCTTGGATCT 155350
| ||| |||| | ||||||| ||| | |||| | || ||||| ||||||||
Sbjct 10358 CTTGTTACATGGGTCRTGAGTGGGAGCTTAGCTTCCGTSTRGGTATGCGACCTTGGATTG 10417
Query 155351 GTGTTGCATACTCTGC 155366
||||||||| || ||
Sbjct 10418 CTGTTGCATATTCAGC 10433
>seq20193
Length=7469
Score = 158 bits (174), Expect = 1e-33
Identities = 257/371 (69%), Gaps = 1/371 (0%)
Strand=Plus/Minus
Query 154978 TGGGTAACTTCTGCTGACAACCGCATCTATGTCGGTTGGTTCGGTGTTCTTATGATCCCT 155037
||| ||||| |||| ||||| | || | || ||||| |||||| | |||||| ||
Sbjct 6827 TGGATAACTAGCACTGA-AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCTCT 6769
Query 155038 TGCCTCCTCGCTGCTGCTACATGCTTCATTGTCGCCTTCATTGCTGCACCTCCTGTAGAC 155097
| | | | || || || ||| | |||||||||||||| ||||| ||||||
Sbjct 6768 ACCTTATTGACGGCAACTTYTGTATTTATTATTGCCTTCATTGCTGCTCCTCCAGTAGAC 6709
Query 155098 ATTGATGGTATTCGTGAACCCGTCGCTGGTTCTTTAATGTATGGTAACAACATCATCTCT 155157
|||||||||||||||||||| || | || ||| || | | || |||||||| || ||
Sbjct 6708 ATTGATGGTATTCGTGAACCTGTTTCAGGGTCTCTACTTHACGGAAACAACATTATTTCC 6649
Query 155158 GGTGCTGTTGTCCCTAGTTCAAACGCAATTGGTCTCCACTTCTATCCTATTTGGGAAGCA 155217
||||| || | |||| ||| || || ||| | || || || || || ||||||||
Sbjct 6648 GGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTACATTTTTACCCAATCTGGGAAGCG 6589
Query 155218 GCAACTCTTGATGAGTGGTTGTACAATGGTGGTCCTTTCCAACTTGTAGTCTTCCACTTC 155277
|| | ||||||| ||||| ||||| | |||||||| |||| | || | ||||||
Sbjct 6588 ACATCCGTTGATGAATGGTTATACAACGRTGGTCCTTATGAACTAATTGTTCTACACTTC 6529
Query 155278 CTTATCGGAATCACAGCATACTGTGGTCGTCAGTGGGAACTTTCTTACCGTCTTGGCATG 155337
| | || | | ||| |||||| ||||||| ||| | || ||| || |||
Sbjct 6528 TTACTTGGCGTAGCTTGTTACATGGGTCGTGAGTGGGAGCTTAGCTTCCATCTGGGTATG 6469
Query 155338 CGTCCTTGGAT 155348
| ||||||||
Sbjct 6468 CAACCTTGGAT 6458
>seq24530
Length=26533
Score = 109 bits (120), Expect = 6e-19
Identities = 187/272 (69%), Gaps = 0/272 (0%)
Strand=Plus/Minus
Query 155452 GGTACTTTTAACTATATGTTCGTGTTCCAAGCAGAACACAATATCCTTATGCACCCCTTC 155511
|||||||| || | ||| | || ||||| || || ||||| |||||||||||||| ||
Sbjct 795 GGTACTTTCAATTTCATGATTGTATTCCAGGCTGAVCACAACATCCTTATGCACCCATTT 736
Query 155512 CACATGCTTGGAGTAGCAGGTGTGTTCGGTGGATCTCTTTTCTCTGCTATGCACGGTTCA 155571
||||| | || |||| ||||| | || || || ||| | ||||||| | ||||
Sbjct 735 CACATCTTAGGCCTAGCTGGTGTAAAATGCGGCTCCCTATTCAGTACTATGCATGCTTCA 676
Query 155572 TTGGTGACATCTTCACTAATCCGTGAAACTACTGAGCAAGAGTCTCAGAACTATGGTTAC 155631
|| || || ||| | || | |||| || | | || ||| || | ||||||
Sbjct 675 TTTGTAACTTCTAGTTTTATAAGGGAAAGCACATAAAATGAATCTGCTAATGAAGGTTAC 616
Query 155632 AAGTTCGGACAAGAAGAAGAAACTTATAACATTGTTGCTGCTCATGGATACTTCGGTCGT 155691
| |||| ||||| ||||||||||| || || || || | ||||| || || || |
Sbjct 615 AGATTCGATCAAGAGGAAGAAACTTAGAATATCGTAGCCGATCATGCTTATTTTGGCTGA 556
Query 155692 CTTATCTTCCAGTATGCATCCTTCAACAACTC 155723
| |||||||| |||| || ||||||||
Sbjct 555 TTGATCTTCCAATATGATAGTTTTAACAACTC 524
>seq31657
Length=14304
Score = 107 bits (118), Expect = 2e-18
Identities = 108/141 (77%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 155377 GCTGCGTTCGCTGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCGATG 155436
||||| ||| || ||| | | || || |||||||||| ||| ||||||| |||
Sbjct 288 GCTGCTACCGCAGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATG 347
Query 155437 CCTCTTGGTATCTCTGGTACTTTTAACTATATGTTCGTGTTCCAAGCAGAACACAATATC 155496
||||| || |||||||||||||| || | ||| | | ||||| || |||||||| |||
Sbjct 348 CCTCTAGGAATCTCTGGTACTTTCAATTTCATGATTVTATTCCAGGCTGAACACAACATC 407
Query 155497 CTTATGCACCCCTTCCACATG 155517
||||||||||| || ||||||
Sbjct 408 CTTATGCACCCATTTCACATG 428
>seq25757
Length=3733
Score = 104 bits (114), Expect = 3e-17
Identities = 121/162 (75%), Gaps = 6/162 (4%)
Strand=Plus/Plus
Query 155797 ATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTAGTAGACGCT---AGTGGT 155853
||||| |||||||| || |||||||| ||||| || |||||||| ||| | ||| ||
Sbjct 3563 ATGGCTTTCAACCTAAATGGTTTCAATTTCAATCAATCTGTAGTTGACAGTCAGAGTCGT 3622
Query 155854 AAAGTCATCCCTACATGGGCAGACATTCTTAACCGCGCTGGTCTTGGTATGGAAGTAATG 155913
| | | | || ||| | || || || || ||| |||||||||||||| |||
Sbjct 3623 GTAATTAACACT---TGGACTGATATATATATACGTGCTAACCTTGGTATGGAAGTTATG 3679
Query 155914 CACGAGCGTAACGCTCACAACTTCCCTCTTGACCTTGCTGCT 155955
|| || ||||| ||||| ||||||||||| ||||| ||||||
Sbjct 3680 CATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGCTGCT 3721
>seq18686
Length=60695
Score = 95.1 bits (104), Expect = 1e-14
Identities = 96/125 (77%), Gaps = 5/125 (4%)
Strand=Plus/Minus
Query 155060 GCTTCATTGTC-----GCCTTCATTGCTGCACCTCCTGTAGACATTGATGGTATTCGTGA 155114
|||| |||||| |||||||||||||| |||| |||||||||||||||||||||||
Sbjct 6064 GCTTAATTGTCCCTCTGCCTTCATTGCTGCTCCTCTAGTAGACATTGATGGTATTCGTGA 6005
Query 155115 ACCCGTCGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCTAG 155174
||| || | || ||| || | | || |||||||| || || ||| | ||| | ||||
Sbjct 6004 ACCTGTTTCAGGGTCTCTACTTAACGGAAACAACATTATTTCCGGTTCCGTTATTCCTAC 5945
Query 155175 TTCAA 155179
|| ||
Sbjct 5944 TTAAA 5940
>seq46
Length=65133
Score = 95.1 bits (104), Expect = 1e-14
Identities = 289/435 (66%), Gaps = 49/435 (11%)
Strand=Plus/Plus
Query 155497 CTTATGCACCCCTTCCACATGCTTGGAGTAGCAGGTGTGTTCGGTGGATCTCTT-TTCTC 155555
||||||||||| || |||||| | ||| || || | | ||| | |||| |||
Sbjct 51764 CTTATGCACCCATTTCACATGTT------AGCTGGGGTATCAGTTGGCT-TCTTATTCAG 51816
Query 155556 TGCTATGCACGGTTCATTGGTGACATCTTCACTAATCCGTGAAACTACTGAGCAAGAGTC 155615
||||||||| ||||| ||||| || ||| ||| | ||||| || || | || ||
Sbjct 51817 TGCTATGCATGGTTCCTTGGTAACTTCTAGTTCGATCAGGGAAACCACAGA--ATGAATC 51874
Query 155616 TCAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAAACTTATAACATTGTTGCTGCTCA 155675
| || | ||||||| ||||| || || ||||||||||| || || | || |||
Sbjct 51875 TGCTAATGAAGGTTACAGATTCGGTCA-GAGGAAGAAACTTAGAATATCATAGCCGCT-- 51931
Query 155676 TGGATACTTCGGTCGTCTTATCTTCCAGTATGCATCCTTCAACAACTCAAGAAGTCTTCA 155735
|| |||| | | ||| ||| | | |||| | || | ||
Sbjct 51932 --GAAACTTAG---------------AATAT-CAT-----AGCCGCTCAGG--GT-TACA 51965
Query 155736 CTTCTTCCTTGCTGCATGGCCTGTGGTCTGCATCTGGGCAACTGCTATGGGTGTGTCAAC 155795
|||||||| ||||| ||||| || || | |||||| || ||| | ||| | || |
Sbjct 51966 CTTCTTCCGAGCTGCTTGGCCCGTAGTAGGTATCTGGTTTACCGCTTTAGGTAT--CAGC 52023
Query 155796 G--ATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTAGTAGACGCT-AGTGG 155852
| |||| |||| ||| || |||||||| |||||||| |||||||| || | ||||
Sbjct 52024 GCTATGGGTTTCACCCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAGTG- 52082
Query 155853 TAAAGTCATCCCTACATGGGCAGACAT---TCTT-AACCGCGCTGGTCTTGGTATGGAAG 155908
| | || || || ||||| || || || | ||||| ||| |||||||||||||
Sbjct 52083 TCATGTAATTAACACTTGGGCCGATATGTATCATCAACCGTGCTAACCTTGGTATGGAAG 52142
Query 155909 TAATGCACGAGCGTA 155923
| ||||| || ||||
Sbjct 52143 TTATGCATGAACGTA 52157
>seq8181
Length=32328
Score = 89.7 bits (98), Expect = 6e-13
Identities = 183/272 (67%), Gaps = 0/272 (0%)
Strand=Plus/Minus
Query 155452 GGTACTTTTAACTATATGTTCGTGTTCCAAGCAGAACACAATATCCTTATGCACCCCTTC 155511
||||||| || | ||| | | |||| || || |||| |||||||||||||| ||
Sbjct 12081 GGTACTTCCAATTTCATGATTCTATTCCTTGCTGAGTACAACATCCTTATGCACCCATTT 12022
Query 155512 CACATGCTTGGAGTAGCAGGTGTGTTCGGTGGATCTCTTTTCTCTGCTATGCACGGTTCA 155571
||||| | || |||| |||| | || || || || | || |||||| | |||
Sbjct 12021 CACATCTTAGGCCTAGCTTGTGTAAAAAGCGGCTCCCTATTATGTGTTATGCATGCTTCC 11962
Query 155572 TTGGTGACATCTTCACTAATCCGTGAAACTACTGAGCAAGAGTCTCAGAACTATGGTTAC 155631
||||| || ||| | ||| | ||||| || || | || ||| || | ||||||
Sbjct 11961 TTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTAC 11902
Query 155632 AAGTTCGGACAAGAAGAAGAAACTTATAACATTGTTGCTGCTCATGGATACTTCGGTCGT 155691
| || || |||| |||||||| || || || || |||||| || || || ||
Sbjct 11901 AGATTTGGTTAAGAGGAAGAAACATAGAATATCGTAGCTGCTTATTCTTATTTTGGCAAA 11842
Query 155692 CTTATCTTCCAGTATGCATCCTTCAACAACTC 155723
| ||||| || ||||| |||||||||||
Sbjct 11841 TTAATCTTTCAATATGCTAGTTTCAACAACTC 11810
>seq20218
Length=9351
Score = 82.4 bits (90), Expect = 9e-11
Identities = 72/90 (80%), Gaps = 0/90 (0%)
Strand=Plus/Plus
Query 155866 ACATGGGCAGACATTCTTAACCGCGCTGGTCTTGGTATGGAAGTAATGCACGAGCGTAAC 155925
|| |||| || || | ||||| ||| |||||||||||||| ||||| || |||||
Sbjct 2122 ACTTGGGTTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 2181
Query 155926 GCTCACAACTTCCCTCTTGACCTTGCTGCT 155955
||||| ||||||||||| ||||| ||||||
Sbjct 2182 GCTCATAACTTCCCTCTAGACCTAGCTGCT 2211
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 584520924184400
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