Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21] 42,990 sequences; 724,284,658 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq11014 170 6e-38 seq20193 163 8e-36 seq31657 122 2e-23 seq25757 93.3 1e-14 seq3149 80.6 8e-11 >seq11014 Length=29319 Score = 170 bits (188), Expect = 6e-38 Identities = 271/386 (70%), Gaps = 4/386 (1%) Strand=Plus/Minus Query 41116 GAGCTGTGTATGCCACAAATATCCATGGTCTCATACCTAGTCTGTATGAAAGTTCCCACT 41175 |||||| ||||| ||| ||||| |||| |||||| | | | | ||| ||||||| Sbjct 10435 GAGCTGAATATGCAACAGCAATCCAAGGTCGCATACCYASACGGAAGCTAAGCTCCCACT 10376 Query 41176 GTCTACCAGCGTATGCTGCTACTCCTATTAAAAAGTGAAAGACAATGAGTTGATATGGTC 41235 ||| ||| ||||| || | ||| ||||| | ||||| |||| ||| || | Sbjct 10375 CAYGACCCATGTAACAAGCTACGCCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGAC 10316 Query 41236 CGCCGTTGTATAGCCACTCGTCCAGTG-TGCCGGCTTCCCAGATTGGGTAGAAATGTAGT 41294 | |||||| ||| ||| || || | | ||||| |||||||||||||||| ||||||| Sbjct 10315 CACCGTTGAATAACCATTCATCAACGGATGCCG-CTTCCCAGATTGGGTAAAAATGTAAA 10257 Query 41295 CCGATTGCGTTAGAGCTCGGAACGACAGCTCCAGATATAATATTGTTCCCGTACATTAAC 41354 || || || ||| | |||| | || || || ||||| ||||| ||||| | || Sbjct 10256 CCTATAGCTGCAGAAGTAGGAATAATGGCACCGGAAATAATGTTGTTTCCGTAAAGTAGA 10197 Query 41355 GAGCCGGAAACGGGCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATAAAGGCG 41414 || || ||||| || |||| || ||||| || ||||| || || || | || ||||| Sbjct 10196 GACCCTGAAACAGGTTCACCAATACCATCAATGTCTACTGGAGGAGCAACAATGAAGGCA 10137 Query 41415 ATTATGAA-ACATGTGGTAGCAGTTAGTAATGCTGGAATCATTAGCACACCAAACCAACC 41473 || || || ||| | || || || | ||| | || ||||| | |||||||||| || Sbjct 10136 ATAATAAATACA-GAAGTWGCCGTCAATAAGGTAGGGATCATCAAAACACCAAACCGTCC 10078 Query 41474 TACGTATAGGCGGTTGTCGGTGCTAG 41499 | ||| || ||||| || ||||||| Sbjct 10077 AATGTAAAGACGGTTTTCAGTGCTAG 10052 >seq20193 Length=7469 Score = 163 bits (180), Expect = 8e-36 Identities = 265/377 (70%), Gaps = 5/377 (1%) Strand=Plus/Plus Query 41136 ATCCATGGTCTCATACCTAGTCTGTATGAAAGTTCCCACTGTCTACCAGCGTATGCTGCT 41195 ||||| ||| |||||| || | | ||| ||||||| | ||| ||| ||| Sbjct 6458 ATCCAAGGTTGCATACCCAGATGGAAGCTAAGCTCCCACTCACGACCCATGTAACAAGCT 6517 Query 41196 ACTCCTATTAAAAAGTGAAAGACAATGAGTTGATATGGTCCGCCGTTGTATAGCCACTCG 41255 || || | ||| ||||| | ||||| |||| ||| || || ||||||||| ||| || Sbjct 6518 ACGCCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCAYCGTTGTATAACCATTCA 6577 Query 41256 TCCAGTG-TGCCGGCTTCCCAGATTGGGTAGAAATGTAGTCCGATTGCGTTAGAGCTCGG 41314 || | | || || |||||||||||||||| ||||||| || || || ||| | || Sbjct 6578 TCAACGGATGTCG-CTTCCCAGATTGGGTAAAAATGTAAACCTATAGCTGCAGAAGTAGG 6636 Query 41315 AACGACAGCTCCAGATATAATATTGTTCCCGTACATTAACGAGCCGGAAACGGGCTCACG 41374 || | || || || ||||| ||||| |||| | || || || ||||| || ||||| Sbjct 6637 AATAATGGCACCGGAAATAATGTTGTTTCCGTDAAGTAGAGACCCTGAAACAGGTTCACG 6696 Query 41375 TATGCCATCTATATCTACAGGCGGTGCTGCGATAAAGGCGATTATGAA-ACATGTGGTAG 41433 || ||||| || ||||| || || || || || ||||| || || || ||| || | Sbjct 6697 AATACCATCAATGTCTACTGGAGGAGCAGCAATGAAGGCAATAATAAATACA-RAAGTTG 6755 Query 41434 CAGTTAGTAATGCTGGAATCATTAGCACACCAAACCAACCTACGTATAGGCGGTTGTCGG 41493 | || | ||| | | ||||| | ||||||||||| || | ||| || ||||| || | Sbjct 6756 CCGTCAATAAGGTAGAGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTT-TCAG 6814 Query 41494 TGCTAGTGACCCAGTTA 41510 ||||||| | ||||||| Sbjct 6815 TGCTAGTTATCCAGTTA 6831 >seq31657 Length=14304 Score = 122 bits (134), Expect = 2e-23 Identities = 118/150 (79%), Gaps = 3/150 (2%) Strand=Plus/Minus Query 40961 GCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCTGCTTGGAAGACAAACATGAA 41020 ||| | ||| || ||||||||||| || ||||||||||| || ||||| | || |||||| Sbjct 434 GCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGTTCAGCCTGGAATABAATCATGAA 375 Query 41021 GTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAGAAAGAACCCTGACCGAATGG 41080 ||||| || ||| |||||||| ||||||||||||||| ||| || ||||||| ||| Sbjct 374 ATTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCGATTGG 315 Query 41081 ATAAACTAAGAATACAGC--TAG-AGCTGC 41107 || | ||||| || || ||| |||||| Sbjct 314 GTAGATCAAGAAAACTGCGGTAGCAGCTGC 285 >seq25757 Length=3733 Score = 93.3 bits (102), Expect = 1e-14 Identities = 117/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 40529 AGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAG 40588 || ||||| ||||||||| ||||| ||||| ||||| || ||||| ||||||||||| || Sbjct 3721 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 3662 Query 40589 ACTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTCTACTAC 40648 | | || | ||||| |||||| ||| || || | | ||| ||||| Sbjct 3661 GTTAGCACGTATATATATATCAGTCCAAGTGTTAATTACACGACTCTGACTGTCAACTAC 3602 Query 40649 TGACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAG 40689 || || || || || |||||||| ||||| |||||||||| Sbjct 3601 AGATTGATTGAAATTGAAACCATTTAGGTTGAAAGCCATAG 3561 >seq3149 Length=150756 Score = 80.6 bits (88), Expect = 8e-11 Identities = 77/99 (78%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 41000 TGCTTGGAAGACAAACATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGA 41059 || |||||| |||| |||| | ||||| || ||| |||||||| ||||||||||||||| Sbjct 11696 TGGTTGGAATACAATCATGTAATTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGA 11637 Query 41060 GAAAGAACCCTGACCGAATGGATAAACTAAGAATACAGC 41098 ||| || | ||||| ||| || | |||||||| || Sbjct 11636 AAAACTTCCTTAACCGATTGGGTAGATCAAGAATACTGC 11598 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143629039026660