Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21] 42,990 sequences; 724,284,658 total letters Query= NC_021071.1 Length=177211 Score E Sequences producing significant alignments: (Bits) Value seq11014 174 2e-38 seq20193 159 4e-34 seq24530 145 9e-30 seq31657 116 4e-21 seq8181 113 5e-20 seq25757 107 2e-18 seq46 87.8 2e-12 seq20218 82.4 9e-11 >seq11014 Length=29319 Score = 174 bits (192), Expect = 2e-38 Identities = 273/393 (69%), Gaps = 0/393 (0%) Strand=Plus/Minus Query 67912 AGACCAAGAACACAGCGAATGCTGCAGACACTGGAGCAGAGTATGCTACACAGATCCAAG 67971 ||| |||||| || ||| || | | || |||| || ||||| ||| ||||||| Sbjct 10468 AGATCAAGAAAACTGCGGTAGCAACTGCAACAAGAGCTGAATATGCAACAGCAATCCAAG 10409 Query 67972 GACGCATACCAAGACGGTAAGAAAGTTCCCACTGACGACCACAGTATGCTGTGATTCCGA 68031 | |||||||| | |||| | ||| ||||||| | |||| ||| | | || | Sbjct 10408 GTCGCATACCYASACGGAAGCTAAGCTCCCACTCAYGACCCATGTAACAAGCTACGCCAA 10349 Query 68032 TAAGGAAGTGGAAGACTACAAGTTGGAAAGGTCCACCATTATACAACCACTCATCTAGAG 68091 | |||||| | || | |||| |||| ||||| || | ||||| ||||| | | Sbjct 10348 GTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCGTTGAATAACCATTCATCAACGG 10289 Query 68092 TTGCTGCTTCCCAGATAGGATAGAAGTGAAGACCGATTGCGTTTGAACTAGGAACAACAG 68151 ||| ||||||||||| || || || || | ||| || || ||| |||||| || | Sbjct 10288 ATGCCGCTTCCCAGATTGGGTAAAAATGTAAACCTATAGCTGCAGAAGTAGGAATAATGG 10229 Query 68152 CACCAGAAATGATGTTGTTACCGTACATGAGCGAACCTGCAACAGGTTCTCTGATACCAT 68211 |||| ||||| |||||||| ||||| | || || |||| ||||||||| | ||||||| Sbjct 10228 CACCGGAAATAATGTTGTTTCCGTAAAGTAGAGACCCTGAAACAGGTTCACCAATACCAT 10169 Query 68212 CGATATCAACTGGAGGTGCTGCAATGAATGCAATGATGAAGCAAGTTGCTGCTGCGAGCA 68271 | || || |||||||| || ||||||| ||||| || || || | || | | | Sbjct 10168 CAATGTCTACTGGAGGAGCAACAATGAAGGCAATAATAAATACAGAAGTWGCCGTCAATA 10109 Query 68272 AGCAAGGAATCATCAACACACCGAACCAACCAA 68304 || ||| |||||||| ||||| |||| |||| Sbjct 10108 AGGTAGGGATCATCAAAACACCAAACCGTCCAA 10076 >seq20193 Length=7469 Score = 159 bits (176), Expect = 4e-34 Identities = 238/340 (70%), Gaps = 0/340 (0%) Strand=Plus/Plus Query 67965 ATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTGACGACCACAGTATGCTGTG 68024 |||||||| ||||||| ||| || | ||| ||||||| |||||| ||| | Sbjct 6458 ATCCAAGGTTGCATACCCAGATGGAAGCTAAGCTCCCACTCACGACCCATGTAACAAGCT 6517 Query 68025 ATTCCGATAAGGAAGTGGAAGACTACAAGTTGGAAAGGTCCACCATTATACAACCACTCA 68084 | || | | |||||| | || | |||| |||| ||| | || || ||||| ||| Sbjct 6518 ACGCCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCAYCGTTGTATAACCATTCA 6577 Query 68085 TCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAAGACCGATTGCGTTTGAACTAGGA 68144 || | | || ||||||||||| || || || || | ||| || || ||| ||||| Sbjct 6578 TCAACGGATGTCGCTTCCCAGATTGGGTAAAAATGTAAACCTATAGCTGCAGAAGTAGGA 6637 Query 68145 ACAACAGCACCAGAAATGATGTTGTTACCGTACATGAGCGAACCTGCAACAGGTTCTCTG 68204 | || ||||| ||||| |||||||| |||| | || || |||| ||||||||| | Sbjct 6638 ATAATGGCACCGGAAATAATGTTGTTTCCGTDAAGTAGAGACCCTGAAACAGGTTCACGA 6697 Query 68205 ATACCATCGATATCAACTGGAGGTGCTGCAATGAATGCAATGATGAAGCAAGTTGCTGCT 68264 |||||||| || || |||||||| || |||||||| ||||| || || | | ||| Sbjct 6698 ATACCATCAATGTCTACTGGAGGAGCAGCAATGAAGGCAATAATAAATACARAAGTTGCC 6757 Query 68265 GCGAGCAAGCAAGGAATCATCAACACACCGAACCAACCAA 68304 | | ||| || |||||||| ||||| ||||| |||| Sbjct 6758 GTCAATAAGGTAGAGATCATCAAAACACCAAACCATCCAA 6797 >seq24530 Length=26533 Score = 145 bits (160), Expect = 9e-30 Identities = 195/272 (72%), Gaps = 0/272 (0%) Strand=Plus/Plus Query 67590 GAGTTGTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACA 67649 |||||||| ||| |||| ||||||||||| | || || || ||||| | || || Sbjct 524 GAGTTGTTAAAACTATCATATTGGAAGATCAATCAGCCAAAATAAGCATGATCGGCTACG 583 Query 67650 ATGTTGTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCA 67709 || || ||||| ||||| ||||| |||| ||||||| | || || || | | Sbjct 584 ATATTCTAAGTTTCTTCCTCTTGATCGAATCTGTAACCTTCATTAGCAGATTCATTTTAT 643 Query 67710 GTAGTTTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAA 67769 || |||| || |||| | |||||| |||| ||| | ||||||| ||| || || || Sbjct 644 GTGCTTTCCCTTATAAAACTAGAAGTTACAAATGAAGCATGCATAGTACTGAATAGGGAG 703 Query 67770 CCACCGAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCT 67829 || | |||||| |||| || | || || ||||||||||||||||||||||| || Sbjct 704 CCGCATTTTACACCAGCTAGGCCTAAGATGTGAAATGGGTGCATAAGGATGTTGTGBTCA 763 Query 67830 GCTTGGAACACGAACATGTAGTTAAAAGTACC 67861 || ||||| || | |||| | || |||||||| Sbjct 764 GCCTGGAATACAATCATGAAATTGAAAGTACC 795 >seq31657 Length=14304 Score = 116 bits (128), Expect = 4e-21 Identities = 105/133 (79%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 67796 CATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCTTGGAACACGAACATGTAGTTAAA 67855 ||| || ||||||||||||||||||||||| || || ||||| | | |||| | || || Sbjct 428 CATGTGAAATGGGTGCATAAGGATGTTGTGTTCAGCCTGGAATABAATCATGAAATTGAA 369 Query 67856 AGTACCAGAAATACCAAGAGGCATTGCGTCAGAGAAAGAACCTTGACCGAAAGGATAGAC 67915 ||||||||| || || |||||||| | ||||| ||| |||||||||| || |||| Sbjct 368 AGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCGATTGGGTAGAT 309 Query 67916 CAAGAACACAGCG 67928 |||||| || ||| Sbjct 308 CAAGAAAACTGCG 296 >seq8181 Length=32328 Score = 113 bits (124), Expect = 5e-20 Identities = 188/272 (69%), Gaps = 0/272 (0%) Strand=Plus/Plus Query 67590 GAGTTGTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACA 67649 |||||||||||| ||||| || ||||| || || || || || |||||| || Sbjct 11810 GAGTTGTTGAAACTAGCATATTGAAAGATTAATTTGCCAAAATAAGAATAAGCAGCTACG 11869 Query 67650 ATGTTGTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCA 67709 || || || || ||||| |||| || || ||||||| | || || || | || Sbjct 11870 ATATTCTATGTTTCTTCCTCTTAACCAAATCTGTAACCTTCATTAGCAGATTCATTTTCT 11929 Query 67710 GTAGTTTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAA 67769 || ||||| ||||| | | |||||| || | ||| | |||||| ||| || || || Sbjct 11930 GTGGTTTCCCTGATCAAACTAGAAGTTACCAAGGAAGCATGCATAACACATAATAGGGAG 11989 Query 67770 CCACCGAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCT 67829 || | ||||| |||| || | || || |||||||||||||||||||||| ||| Sbjct 11990 CCGCTTTTTACACAAGCTAGGCCTAAGATGTGAAATGGGTGCATAAGGATGTTGTACTCA 12049 Query 67830 GCTTGGAACACGAACATGTAGTTAAAAGTACC 67861 || |||| | | |||| | || ||||||| Sbjct 12050 GCAAGGAATAGAATCATGAAATTGGAAGTACC 12081 >seq25757 Length=3733 Score = 107 bits (118), Expect = 2e-18 Identities = 124/164 (76%), Gaps = 6/164 (4%) Strand=Plus/Minus Query 67358 AGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCCAAG 67417 |||||| ||||| ||||||||||| ||||| ||||| || |||||||||||||| ||||| Sbjct 3721 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 3662 Query 67418 TCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCAC-CTG--CGTCAAC 67474 || | || || || | |||||| ||| || || || ||| |||||| Sbjct 3661 GTTAGCACGTATATATATATCAGTCCAAGTGTTAATTAC---ACGACTCTGACTGTCAAC 3605 Query 67475 GACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAG 67518 || ||||| ||||| |||||||| || |||||||| ||||||| Sbjct 3604 TACAGATTGATTGAAATTGAAACCATTTAGGTTGAAAGCCATAG 3561 >seq46 Length=65133 Score = 87.8 bits (96), Expect = 2e-12 Identities = 282/432 (65%), Gaps = 43/432 (10%) Strand=Plus/Minus Query 67390 TACGCTCGTGCATAACTTCCATTCCAAGTCCTGCTCTGTTAAGGATG----TCTGCCCAA 67445 |||| || |||||||||||||| ||||| || | ||| | ||| || |||||| Sbjct 52157 TACGTTCATGCATAACTTCCATACCAAGGTTAGCACGGTTGATGATACATATCGGCCCAA 52098 Query 67446 GTAGGAATCACTTTACCACCTGCG-TCAACGACGGATTGGTTGAAGTTGAAACCGTTGAG 67504 || ||| || | || || | ||||| || ||||||||||| |||||||| || || Sbjct 52097 GTGTTAATTACATGAC-ACTGACTATCAACTACAGATTGGTTGAAATTGAAACCATTTAG 52039 Query 67505 GTTGAATGCCATAGTTGACACACCCATTGCAGTGAACCAGATGCAGACCACAGGGAATGC 67564 | |||| |||||| | ||| | || || |||||||| | || || || | || Sbjct 52038 GGTGAAACCCATAGCGCTGATACCTAAAGCGGTAAACCAGATACCTACTACGGGCCAAGC 51979 Query 67565 AGCAAGGAAGAAGTGAAGACTTCTTGAGTTGTTGAAAGATGCATACTGGAAGATCAAGCG 67624 ||| |||||||||| | || | |||| | | ||| ||| | Sbjct 51978 AGCTCGGAAGAAGTGTA-AC--CCTGAGCGGCT-----ATG-ATATT------------- 51941 Query 67625 ACCGAAGTATCCATGAGCAGCAACAATGTTGTAAGTCTCTTCTTCTTGTCCGAACTTGTA 67684 | |||| || ||| || | || || ||||| ||||| || || ||||| |||| Sbjct 51940 --CTAAGTTTC----AGCGGCTATGATATTCTAAGTTTCTTCCTC-TGACCGAATCTGTA 51888 Query 67685 ACCGTAGTTCTGTGACTCTTGCTCAGTAGTTTCTCTGATAAGAGAAGAAGTAACAAGAGA 67744 ||| | || || || | || || ||||| ||||| | |||||| || | || Sbjct 51887 ACCTTCATTAGCAGATTCAT--TCTGTGGTTTCCCTGATCGAACTAGAAGTTACCAAGGA 51830 Query 67745 ACCGTGCATAGCACTAAAGAGTGAACCACCGAATACACCTGCTACTCCAAGCATATGGAA 67804 ||| ||||||||||| || | | ||| | |||| || ||| | ||| || || Sbjct 51829 ACCATGCATAGCACTGAATAAGAAGCCAACTGATACCCCAGCT------AACATGTGAAA 51776 Query 67805 TGGGTGCATAAG 67816 |||||||||||| Sbjct 51775 TGGGTGCATAAG 51764 >seq20218 Length=9351 Score = 82.4 bits (90), Expect = 9e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 67358 AGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCCAAG 67417 |||||| ||||| ||||||||||| ||||| ||||| || |||||||||||||| ||||| Sbjct 2211 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 2152 Query 67418 TCCTGCTCTGTTAAGGATGTCTGCCCAAGT 67447 || | ||| | ||| || ||||||| Sbjct 2151 GTTAGCACGGTTGATGATATCAACCCAAGT 2122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566642536748400