Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21]
42,990 sequences; 724,284,658 total letters
Query= NC_021246.1
Length=281182
Score E
Sequences producing significant alignments: (Bits) Value
seq545 120 5e-22
seq544 104 4e-17
seq16835 102 1e-16
seq796 93.3 8e-14
seq3956 84.2 4e-11
>seq545
Length=31085
Score = 120 bits (132), Expect = 5e-22
Identities = 168/236 (71%), Gaps = 0/236 (0%)
Strand=Plus/Minus
Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184
|||| || |||||||| | ||||| || || |||| || | ||||| ||| ||
Sbjct 3104 ATTTGCATGCCACCTCTAAGGCGAAGAACAAGGTGCAGGGTTGATTCTTTCTGAATGTTG 3045
Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244
|| || | ||||| || ||| || | ||| ||||| ||||| || |||||||| ||
Sbjct 3044 TAATCTGCCAACGTCCTTCCATCCTCAAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGG 2985
Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304
|| ||||| || || || || ||||| || || | ||| | ||| || ||||| |||
Sbjct 2984 TCTGGAGGAATACCCTCCTTGTCTTGGATCTTTGCTTTAACATTGTCGATGGTATCTGAA 2925
Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
|||||| || | ||| || || || ||||| | || || ||||||||||||||
Sbjct 2924 CTCTCAACCTCCAAAGTAATTGTCTTCCCTGTCAATGTCTTGACAAATATTTGCAT 2869
Score = 89.7 bits (98), Expect = 9e-13
Identities = 108/147 (73%), Gaps = 0/147 (0%)
Strand=Plus/Minus
Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274
||||| || ||||| || | ||||| || || || || || ||||| || ||||| |||
Sbjct 2330 TGTTTCCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATACCTTCCTTGTCTTGAATT 2271
Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334
|| | ||| | ||| || || || || ||| || || ||||||||||| || ||
Sbjct 2270 TTAGCTTTGACATTATCGATGGTGTCTGAGCTCTCGACCTCAAGAGTTATAGTCTTCCCG 2211
Query 193335 GTTAGCGTTTTTACAAATATTTGCATT 193361
|| || ||||| ||||| |||||||||
Sbjct 2210 GTCAGAGTTTTAACAAAGATTTGCATT 2184
Score = 89.7 bits (98), Expect = 9e-13
Identities = 108/147 (73%), Gaps = 0/147 (0%)
Strand=Plus/Minus
Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274
||||| || ||||| || | ||||| || || || || || ||||| || ||||| |||
Sbjct 2558 TGTTTCCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATACCTTCCTTGTCTTGAATT 2499
Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334
|| | ||| | ||| || || || || ||| || || ||||||||||| || ||
Sbjct 2498 TTAGCTTTGACATTATCGATGGTGTCTGAGCTCTCGACCTCAAGAGTTATAGTCTTCCCG 2439
Query 193335 GTTAGCGTTTTTACAAATATTTGCATT 193361
|| || ||||| ||||| |||||||||
Sbjct 2438 GTCAGAGTTTTAACAAAGATTTGCATT 2412
Score = 86.0 bits (94), Expect = 1e-11
Identities = 146/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 193149 AGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCG 193208
|| || ||||| | |||| |||||| || |||||||| | | || | | |||
Sbjct 3764 AGGACAAGATGAAGAGTAGACTCTTTCTGGATGTTATAGTCTGCAAGGGTGCGACCATCC 3705
Query 193209 TCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCT 193268
|| | || || || ||||| || | ||||||||||| || || || ||||| || ||
Sbjct 3704 TCAAGCTGCTTACCAGCAAAGATGAGCCTCTGTTGATCTGGTGGGATCCCTTCCTTGTCC 3645
Query 193269 TGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTT 193328
||||| || | ||| | ||| ||||||||| || ||| || || | || || ||
Sbjct 3644 TGTATCTTTGCTTTCACATTGTCAATAGTATCAGAGCTCTCCACCTCCAATGTGATTGTC 3585
Query 193329 TTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
|| || || || || || ||||| || |||||
Sbjct 3584 TTCCCAGTCAGAGTCTTCACAAAGATCTGCAT 3553
>seq544
Length=28317
Score = 104 bits (114), Expect = 4e-17
Identities = 166/237 (70%), Gaps = 1/237 (0%)
Strand=Plus/Plus
Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184
|||| || || ||||| | ||||| || || |||| || | || ||| ||| ||
Sbjct 21610 ATTTGCATGCCGCCTCTAAGACGAAGAACAAGGTGCAGGGTTGACTGTTTCTGAATGTTG 21669
Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244
|| || | || || || ||| || | ||| | ||| ||||| || |||||||| ||
Sbjct 21670 TAATCTGCCAAGGTCCTTCCATCTTCAAGTTGCTCTCCAGCAAATATCAATCTCTGCTGG 21729
Query 193245 TCAGGAGGTATTCCTTC-TTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303
| ||||| || || || ||| ||||| || || | ||| | ||| |||||||| ||
Sbjct 21730 TTTGGAGGAATACCCTCCTTTGTCTTGGATCTTTGCTTTAACATTGTTGATAGTATCTGA 21789
Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
| |||||| || | ||| || || || ||||| | || || ||||||||||||||
Sbjct 21790 ACTCTCAACCTCCAAAGTAATTGTCTTCCCTGTCAATGTCTTAACAAATATTTGCAT 21846
>seq16835
Length=8075
Score = 102 bits (112), Expect = 1e-16
Identities = 161/231 (70%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192
|||||| | | || || || ||||| | || | ||| || || || |||||||
Sbjct 6874 ACCACCACGGAGACGGAGCACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGC 6933
Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGG 193252
| || | | ||| || | || |||||||| ||||| || | ||| || || || ||
Sbjct 6934 AAGAGTACGACCATCCTCAAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCTGGGGG 6993
Query 193253 TATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAAC 193312
|| ||||| || || || || |||| ||| | ||| || || ||||||||||||||
Sbjct 6994 AATCCCTTCCTTGTCCTGGATCTTGGCTTTGACATTGTCGATGGTGTCGGAAGACTCAAC 7053
Query 193313 TTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363
||||| || || || || || ||||| ||||| || || || ||||| ||
Sbjct 7054 CTCTAGGGTGATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTT 7104
>seq796
Length=44438
Score = 93.3 bits (102), Expect = 8e-14
Identities = 162/236 (69%), Gaps = 0/236 (0%)
Strand=Plus/Minus
Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184
|||| || ||||||| | || || |||| || | || | ||| || || ||
Sbjct 19752 ATTTGCATTCCACCTCGGAGACGCAGGACCAAGTGAAGGGTTGACTCCTTCTGGATGTTG 19693
Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244
|| |||| ||| || || ||| || || || ||||||||||| || || ||||| ||
Sbjct 19692 TAATCGGCTAATGTCCTTCCATCTTCCAACTGCTTTCCGGCAAAGATCAACCTCTGCTGG 19633
Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304
|| || || || |||||||| || || ||||||| || | ||| ||| || || |||
Sbjct 19632 TCTGGTGGAATACCTTCTTTGTCCTGAATTTTGGCCTTAACATTGTCAATGGTGTCAGAA 19573
Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
|| || || || || || || || || || | || || ||||| ||||||||
Sbjct 19572 CTTTCCACCTCAAGGGTGATTGTCTTGCCAGTCAAGGTCTTCACAAAGATTTGCAT 19517
Score = 89.7 bits (98), Expect = 9e-13
Identities = 108/147 (73%), Gaps = 0/147 (0%)
Strand=Plus/Minus
Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274
|| ||||||||||| || |||||||| || || || || || ||||| || || || ||
Sbjct 19206 TGCTTTCCGGCAAAGATCAATCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATC 19147
Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334
|||| ||| | ||| |||||| ||||| ||||| || || || || || || ||
Sbjct 19146 TTGGCTTTAACATTGTCAATAGTGTCGGAGCTTTCAACCTCAAGGGTGATGGTCTTTCCG 19087
Query 193335 GTTAGCGTTTTTACAAATATTTGCATT 193361
|| | || || ||||| |||||||||
Sbjct 19086 GTCAAAGTCTTCACAAAAATTTGCATT 19060
Score = 89.7 bits (98), Expect = 9e-13
Identities = 108/147 (73%), Gaps = 0/147 (0%)
Strand=Plus/Minus
Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274
|| ||||||||||| || |||||||| || || || || || ||||| || || || ||
Sbjct 19434 TGCTTTCCGGCAAAGATCAATCTCTGCTGGTCTGGTGGAATGCCTTCCTTGTCCTGGATC 19375
Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334
|||| ||| | ||| |||||| ||||| ||||| || || || || || || ||
Sbjct 19374 TTGGCTTTAACATTGTCAATAGTGTCGGAGCTTTCAACCTCAAGGGTGATGGTCTTTCCG 19315
Query 193335 GTTAGCGTTTTTACAAATATTTGCATT 193361
|| | || || ||||| |||||||||
Sbjct 19314 GTCAAGGTCTTCACAAAAATTTGCATT 19288
>seq3956
Length=148667
Score = 84.2 bits (92), Expect = 4e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211
|| ||||| | ||||| ||| || |||||| || || | | || | ||| |
Sbjct 117774 ACAAGATGAATTGTAGACTCCTTTTGAATATTGTAATCAGCAAGTGTATGATCATCCTTA 117833
Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271
||||||||||| || | | |||||| |||||||| | || ||||||||||| ||||
Sbjct 117834 AATTGTTTTCCACCATATACTAATCTTTGTTGATCTGAGGGAATTCCTTCTTTGTCTTCA 117893
Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331
|| || | ||| | ||| ||| | | || | || || || ||||| || || ||
Sbjct 117894 ATCTTTGCTTTAACATTGTCAATGGAGTTGGTACTCTTCACATCCAGAGTAATGGTCTTT 117953
Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCAT 193360
|| | || ||||| ||||| ||||||||
Sbjct 117954 CCAATGAGAGTTTTAACAAAGATTTGCAT 117982
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 899170948216800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |