Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21] 42,990 sequences; 724,284,658 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq545 120 5e-22 seq544 104 4e-17 seq16835 102 1e-16 seq796 93.3 8e-14 seq3956 84.2 4e-11 >seq545 Length=31085 Score = 120 bits (132), Expect = 5e-22 Identities = 168/236 (71%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || |||||||| | ||||| || || |||| || | ||||| ||| || Sbjct 3104 ATTTGCATGCCACCTCTAAGGCGAAGAACAAGGTGCAGGGTTGATTCTTTCTGAATGTTG 3045 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 || || | ||||| || ||| || | ||| ||||| ||||| || |||||||| || Sbjct 3044 TAATCTGCCAACGTCCTTCCATCCTCAAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGG 2985 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || ||||| || || || || ||||| || || | ||| | ||| || ||||| ||| Sbjct 2984 TCTGGAGGAATACCCTCCTTGTCTTGGATCTTTGCTTTAACATTGTCGATGGTATCTGAA 2925 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||||| || | ||| || || || ||||| | || || |||||||||||||| Sbjct 2924 CTCTCAACCTCCAAAGTAATTGTCTTCCCTGTCAATGTCTTGACAAATATTTGCAT 2869 Score = 89.7 bits (98), Expect = 9e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 ||||| || ||||| || | ||||| || || || || || ||||| || ||||| ||| Sbjct 2330 TGTTTCCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATACCTTCCTTGTCTTGAATT 2271 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 || | ||| | ||| || || || || ||| || || ||||||||||| || || Sbjct 2270 TTAGCTTTGACATTATCGATGGTGTCTGAGCTCTCGACCTCAAGAGTTATAGTCTTCCCG 2211 Query 193335 GTTAGCGTTTTTACAAATATTTGCATT 193361 || || ||||| ||||| ||||||||| Sbjct 2210 GTCAGAGTTTTAACAAAGATTTGCATT 2184 Score = 89.7 bits (98), Expect = 9e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 ||||| || ||||| || | ||||| || || || || || ||||| || ||||| ||| Sbjct 2558 TGTTTCCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATACCTTCCTTGTCTTGAATT 2499 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 || | ||| | ||| || || || || ||| || || ||||||||||| || || Sbjct 2498 TTAGCTTTGACATTATCGATGGTGTCTGAGCTCTCGACCTCAAGAGTTATAGTCTTCCCG 2439 Query 193335 GTTAGCGTTTTTACAAATATTTGCATT 193361 || || ||||| ||||| ||||||||| Sbjct 2438 GTCAGAGTTTTAACAAAGATTTGCATT 2412 Score = 86.0 bits (94), Expect = 1e-11 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 193149 AGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCG 193208 || || ||||| | |||| |||||| || |||||||| | | || | | ||| Sbjct 3764 AGGACAAGATGAAGAGTAGACTCTTTCTGGATGTTATAGTCTGCAAGGGTGCGACCATCC 3705 Query 193209 TCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCT 193268 || | || || || ||||| || | ||||||||||| || || || ||||| || || Sbjct 3704 TCAAGCTGCTTACCAGCAAAGATGAGCCTCTGTTGATCTGGTGGGATCCCTTCCTTGTCC 3645 Query 193269 TGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTT 193328 ||||| || | ||| | ||| ||||||||| || ||| || || | || || || Sbjct 3644 TGTATCTTTGCTTTCACATTGTCAATAGTATCAGAGCTCTCCACCTCCAATGTGATTGTC 3585 Query 193329 TTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || || ||||| || ||||| Sbjct 3584 TTCCCAGTCAGAGTCTTCACAAAGATCTGCAT 3553 >seq544 Length=28317 Score = 104 bits (114), Expect = 4e-17 Identities = 166/237 (70%), Gaps = 1/237 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || || ||||| | ||||| || || |||| || | || ||| ||| || Sbjct 21610 ATTTGCATGCCGCCTCTAAGACGAAGAACAAGGTGCAGGGTTGACTGTTTCTGAATGTTG 21669 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 || || | || || || ||| || | ||| | ||| ||||| || |||||||| || Sbjct 21670 TAATCTGCCAAGGTCCTTCCATCTTCAAGTTGCTCTCCAGCAAATATCAATCTCTGCTGG 21729 Query 193245 TCAGGAGGTATTCCTTC-TTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 | ||||| || || || ||| ||||| || || | ||| | ||| |||||||| || Sbjct 21730 TTTGGAGGAATACCCTCCTTTGTCTTGGATCTTTGCTTTAACATTGTTGATAGTATCTGA 21789 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | |||||| || | ||| || || || ||||| | || || |||||||||||||| Sbjct 21790 ACTCTCAACCTCCAAAGTAATTGTCTTCCCTGTCAATGTCTTAACAAATATTTGCAT 21846 >seq16835 Length=8075 Score = 102 bits (112), Expect = 1e-16 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192 |||||| | | || || || ||||| | || | ||| || || || ||||||| Sbjct 6874 ACCACCACGGAGACGGAGCACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGC 6933 Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGG 193252 | || | | ||| || | || |||||||| ||||| || | ||| || || || || Sbjct 6934 AAGAGTACGACCATCCTCAAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCTGGGGG 6993 Query 193253 TATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAAC 193312 || ||||| || || || || |||| ||| | ||| || || |||||||||||||| Sbjct 6994 AATCCCTTCCTTGTCCTGGATCTTGGCTTTGACATTGTCGATGGTGTCGGAAGACTCAAC 7053 Query 193313 TTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 ||||| || || || || || ||||| ||||| || || || ||||| || Sbjct 7054 CTCTAGGGTGATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTT 7104 >seq796 Length=44438 Score = 93.3 bits (102), Expect = 8e-14 Identities = 162/236 (69%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || ||||||| | || || |||| || | || | ||| || || || Sbjct 19752 ATTTGCATTCCACCTCGGAGACGCAGGACCAAGTGAAGGGTTGACTCCTTCTGGATGTTG 19693 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 || |||| ||| || || ||| || || || ||||||||||| || || ||||| || Sbjct 19692 TAATCGGCTAATGTCCTTCCATCTTCCAACTGCTTTCCGGCAAAGATCAACCTCTGCTGG 19633 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || || |||||||| || || ||||||| || | ||| ||| || || ||| Sbjct 19632 TCTGGTGGAATACCTTCTTTGTCCTGAATTTTGGCCTTAACATTGTCAATGGTGTCAGAA 19573 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || || || || || || | || || ||||| |||||||| Sbjct 19572 CTTTCCACCTCAAGGGTGATTGTCTTGCCAGTCAAGGTCTTCACAAAGATTTGCAT 19517 Score = 89.7 bits (98), Expect = 9e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 || ||||||||||| || |||||||| || || || || || ||||| || || || || Sbjct 19206 TGCTTTCCGGCAAAGATCAATCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATC 19147 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 |||| ||| | ||| |||||| ||||| ||||| || || || || || || || Sbjct 19146 TTGGCTTTAACATTGTCAATAGTGTCGGAGCTTTCAACCTCAAGGGTGATGGTCTTTCCG 19087 Query 193335 GTTAGCGTTTTTACAAATATTTGCATT 193361 || | || || ||||| ||||||||| Sbjct 19086 GTCAAAGTCTTCACAAAAATTTGCATT 19060 Score = 89.7 bits (98), Expect = 9e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 || ||||||||||| || |||||||| || || || || || ||||| || || || || Sbjct 19434 TGCTTTCCGGCAAAGATCAATCTCTGCTGGTCTGGTGGAATGCCTTCCTTGTCCTGGATC 19375 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 |||| ||| | ||| |||||| ||||| ||||| || || || || || || || Sbjct 19374 TTGGCTTTAACATTGTCAATAGTGTCGGAGCTTTCAACCTCAAGGGTGATGGTCTTTCCG 19315 Query 193335 GTTAGCGTTTTTACAAATATTTGCATT 193361 || | || || ||||| ||||||||| Sbjct 19314 GTCAAGGTCTTCACAAAAATTTGCATT 19288 >seq3956 Length=148667 Score = 84.2 bits (92), Expect = 4e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211 || ||||| | ||||| ||| || |||||| || || | | || | ||| | Sbjct 117774 ACAAGATGAATTGTAGACTCCTTTTGAATATTGTAATCAGCAAGTGTATGATCATCCTTA 117833 Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271 ||||||||||| || | | |||||| |||||||| | || ||||||||||| |||| Sbjct 117834 AATTGTTTTCCACCATATACTAATCTTTGTTGATCTGAGGGAATTCCTTCTTTGTCTTCA 117893 Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331 || || | ||| | ||| ||| | | || | || || || ||||| || || || Sbjct 117894 ATCTTTGCTTTAACATTGTCAATGGAGTTGGTACTCTTCACATCCAGAGTAATGGTCTTT 117953 Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || | || ||||| ||||| |||||||| Sbjct 117954 CCAATGAGAGTTTTAACAAAGATTTGCAT 117982 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899170948216800