Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21]
42,990 sequences; 724,284,658 total letters
Query= NC_021247.1
Length=228750
Score E
Sequences producing significant alignments: (Bits) Value
seq558 100 4e-16
seq544 96.9 5e-15
seq545 95.1 2e-14
seq728 93.3 6e-14
>seq558
Length=67963
Score = 100 bits (110), Expect = 4e-16
Identities = 133/185 (72%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879
|||||||| || ||| | || || |||| || || |||||||| ||||| || ||
Sbjct 17321 AAAATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACTATTACCTTAGAGGTAGAGTCA 17262
Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939
|| || | ||| || || || ||| || ||||| || |||||||| || |||||
Sbjct 17261 TCAGACACCATTGACAATGTTAAGGCTAAGATTCAAGACAAGGAAGGCATTCCACCAGAC 17202
Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999
|| || ||||||||| ||||||||||||||||| ||| | |||| || | || ||
Sbjct 17201 CAGCAGCGATTGATTTTCGCCGGTAAGCAGCTCGAGGATGGCCGAACGCTAGCTGACTAC 17142
Query 156000 AATAT 156004
|| ||
Sbjct 17141 AACAT 17137
>seq544
Length=28317
Score = 96.9 bits (106), Expect = 5e-15
Identities = 132/183 (72%), Gaps = 1/183 (1%)
Strand=Plus/Minus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
|||||||||||| |||| |||||||| || || || ||||| || || || || |||
Sbjct 21846 ATGCAAATATTTGTTAAGACATTGACAGGGAAGACAATTACTTTGGAGGTTGAGAGTTCA 21787
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAA-GAAGGCATACCTCCAGAACA 155941
|||| ||| || || ||| || || ||||| ||| || || || |||||| | ||
Sbjct 21786 GATACTATCAACAATGTTAAAGCAAAGATCCAAGACAAAGGAGGGTATTCCTCCAAACCA 21727
Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001
|| |||||||| | ||| || |||| || |||||| || || || ||||||| ||
Sbjct 21726 GCAGAGATTGATATTTGCTGGAGAGCAACTTGAAGATGGAAGGACCTTGGCAGATTACAA 21667
Query 156002 TAT 156004
||
Sbjct 21666 CAT 21664
>seq545
Length=31085
Score = 95.1 bits (104), Expect = 2e-14
Identities = 130/182 (71%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
|||||||||||| | || |||||||| || || || ||||| || || || || |||
Sbjct 2869 ATGCAAATATTTGTCAAGACATTGACAGGGAAGACAATTACTTTGGAGGTTGAGAGTTCA 2928
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|||| || || || ||| || || ||||| || || || || |||||||| ||
Sbjct 2929 GATACCATCGACAATGTTAAAGCAAAGATCCAAGACAAGGAGGGTATTCCTCCAGACCAG 2988
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
|| |||||||| | ||| || ||||| || || ||| || || || ||||||| ||
Sbjct 2989 CAGAGATTGATCTTTGCTGGAAAGCAACTTGAGGATGGAAGGACGTTGGCAGATTACAAC 3048
Query 156003 AT 156004
||
Sbjct 3049 AT 3050
Score = 93.3 bits (102), Expect = 6e-14
Identities = 143/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| || ||| | || || ||||||| || || || ||||| || || || |||
Sbjct 3553 ATGCAGATCTTTGTGAAGACTCTGACTGGGAAGACAATCACATTGGAGGTGGAGAGCTCT 3612
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|||| |||| || |||||| || ||||| || || ||||| || || ||||| |||
Sbjct 3613 GATACTATTGACAATGTGAAAGCAAAGATACAGGACAAGGAAGGGATCCCACCAGATCAA 3672
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
|| || | || | ||| ||||||||||| || ||| | || | |||| |||||
Sbjct 3673 CAGAGGCTCATCTTTGCTGGTAAGCAGCTTGAGGATGGTCGCACCCTTGCAGACTATAAC 3732
Query 156003 ATATCCAAAGAGGCGACGCTTCAT 156026
|| |||||| | || ||||||
Sbjct 3733 ATCCAGAAAGAGTCTACTCTTCAT 3756
>seq728
Length=46982
Score = 93.3 bits (102), Expect = 6e-14
Identities = 108/146 (74%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 18155 AAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTT 18214
||||||||||||||| ||| |||||||| ||||| || ||||| || || || |||
Sbjct 2246 AAACACGCAAAATCACAGTGCAAACCTTCGTCTCTTGAAATTAACTCATTTGAGAAGGTT 2305
Query 18215 AACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAG 18274
|| || ||||||| || | |||||| | |||||||||||| ||| || | |||
Sbjct 2306 AATCCAGGCATTAACCCCCGTTTTTTCAACCAAAATATCGAACAGAAGCTTCCGCTGAAG 2365
Query 18275 AATATACCCTCAACGCACGCGAACGC 18300
|| || || ||||| || || || ||
Sbjct 2366 AAAATCCCTTCAACACAGGCAAAAGC 2391
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 731478710284000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |