Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21] 42,990 sequences; 724,284,658 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq558 100 4e-16 seq544 96.9 5e-15 seq545 95.1 2e-14 seq728 93.3 6e-14 >seq558 Length=67963 Score = 100 bits (110), Expect = 4e-16 Identities = 133/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 |||||||| || ||| | || || |||| || || |||||||| ||||| || || Sbjct 17321 AAAATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACTATTACCTTAGAGGTAGAGTCA 17262 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 || || | ||| || || || ||| || ||||| || |||||||| || ||||| Sbjct 17261 TCAGACACCATTGACAATGTTAAGGCTAAGATTCAAGACAAGGAAGGCATTCCACCAGAC 17202 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 || || ||||||||| ||||||||||||||||| ||| | |||| || | || || Sbjct 17201 CAGCAGCGATTGATTTTCGCCGGTAAGCAGCTCGAGGATGGCCGAACGCTAGCTGACTAC 17142 Query 156000 AATAT 156004 || || Sbjct 17141 AACAT 17137 >seq544 Length=28317 Score = 96.9 bits (106), Expect = 5e-15 Identities = 132/183 (72%), Gaps = 1/183 (1%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||||||| |||| |||||||| || || || ||||| || || || || ||| Sbjct 21846 ATGCAAATATTTGTTAAGACATTGACAGGGAAGACAATTACTTTGGAGGTTGAGAGTTCA 21787 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAA-GAAGGCATACCTCCAGAACA 155941 |||| ||| || || ||| || || ||||| ||| || || || |||||| | || Sbjct 21786 GATACTATCAACAATGTTAAAGCAAAGATCCAAGACAAAGGAGGGTATTCCTCCAAACCA 21727 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 || |||||||| | ||| || |||| || |||||| || || || ||||||| || Sbjct 21726 GCAGAGATTGATATTTGCTGGAGAGCAACTTGAAGATGGAAGGACCTTGGCAGATTACAA 21667 Query 156002 TAT 156004 || Sbjct 21666 CAT 21664 >seq545 Length=31085 Score = 95.1 bits (104), Expect = 2e-14 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||||||| | || |||||||| || || || ||||| || || || || ||| Sbjct 2869 ATGCAAATATTTGTCAAGACATTGACAGGGAAGACAATTACTTTGGAGGTTGAGAGTTCA 2928 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || || || ||| || || ||||| || || || || |||||||| || Sbjct 2929 GATACCATCGACAATGTTAAAGCAAAGATCCAAGACAAGGAGGGTATTCCTCCAGACCAG 2988 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || |||||||| | ||| || ||||| || || ||| || || || ||||||| || Sbjct 2989 CAGAGATTGATCTTTGCTGGAAAGCAACTTGAGGATGGAAGGACGTTGGCAGATTACAAC 3048 Query 156003 AT 156004 || Sbjct 3049 AT 3050 Score = 93.3 bits (102), Expect = 6e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || ||||||| || || || ||||| || || || ||| Sbjct 3553 ATGCAGATCTTTGTGAAGACTCTGACTGGGAAGACAATCACATTGGAGGTGGAGAGCTCT 3612 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| || |||||| || ||||| || || ||||| || || ||||| ||| Sbjct 3613 GATACTATTGACAATGTGAAAGCAAAGATACAGGACAAGGAAGGGATCCCACCAGATCAA 3672 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | || | ||| ||||||||||| || ||| | || | |||| ||||| Sbjct 3673 CAGAGGCTCATCTTTGCTGGTAAGCAGCTTGAGGATGGTCGCACCCTTGCAGACTATAAC 3732 Query 156003 ATATCCAAAGAGGCGACGCTTCAT 156026 || |||||| | || |||||| Sbjct 3733 ATCCAGAAAGAGTCTACTCTTCAT 3756 >seq728 Length=46982 Score = 93.3 bits (102), Expect = 6e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 18155 AAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTT 18214 ||||||||||||||| ||| |||||||| ||||| || ||||| || || || ||| Sbjct 2246 AAACACGCAAAATCACAGTGCAAACCTTCGTCTCTTGAAATTAACTCATTTGAGAAGGTT 2305 Query 18215 AACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAG 18274 || || ||||||| || | |||||| | |||||||||||| ||| || | ||| Sbjct 2306 AATCCAGGCATTAACCCCCGTTTTTTCAACCAAAATATCGAACAGAAGCTTCCGCTGAAG 2365 Query 18275 AATATACCCTCAACGCACGCGAACGC 18300 || || || ||||| || || || || Sbjct 2366 AAAATCCCTTCAACACAGGCAAAAGC 2391 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731478710284000