Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21] 42,990 sequences; 724,284,658 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq545 123 5e-23 seq3956 104 5e-17 seq544 96.9 7e-15 seq558 93.3 8e-14 seq30006 91.5 3e-13 >seq545 Length=31085 Score = 123 bits (136), Expect = 5e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | ||||| | || | || | |||| |||||| ||| || |||||| Sbjct 2186 ATTCCACCACGTAGACGGAGGACAAGRTGAAGGGTAGACTCTTTTTGGATGTTGTAATCA 2127 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | |||||| |||| || | ||||| ||||||||||| | |||||| ||||| || Sbjct 2126 GCAAGTGTTCGGCCATCTTCAAGCTGTTTCCCAGCAAAGATCAGTCTCTGCTGATCTGGA 2067 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || ||||| || ||| ||| |||||| || | || || || Sbjct 2066 GGAATGCCTTCCTTGTCTTGAATCTTAGCTTTGACATTATCAATGGTGTCAGAACTCTCG 2007 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || ||||| ||||| || || || | ||| |||| |||||||||||| Sbjct 2006 ACCTCAAGAGTGATGGTCTTTCCGGTGAGTGTCTTAACAAATATCTGCAT 1957 Score = 111 bits (122), Expect = 3e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | ||||| | || | || | |||| |||||| ||| || |||||| Sbjct 2414 ATTCCACCACGTAGACGGAGGACAAGGTGAAGGGTAGACTCTTTTTGGATGTTGTAATCA 2355 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | |||||| |||| || | ||||| ||||||||||| | ||||| || || || Sbjct 2354 GCAAGTGTTCGGCCATCTTCAAGCTGTTTCCCAGCAAAGATCAGCCTCTGCTGGTCTGGG 2295 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || ||||| |||||| ||| |||||| || | ||||| || Sbjct 2294 GGAATACCTTCCTTGTCTTGAATTTTAGCTTTGACATTATCGATGGTGTCTGAGCTCTCG 2235 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || || ||||| || || || || || | ||||||| ||| || |||||| Sbjct 2234 ACCTCAAGAGTTATAGTCTTCCCGGTCAGAGTTTTAACAAAGATTTGCATT 2184 Score = 105 bits (116), Expect = 1e-17 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||| || | || | || | || | ||| || ||| || |||||| Sbjct 2642 ATACCACCACGAAGGCGAAGGACAAGGTGAAGGGTGGACTCCTTTTGGATGTTGTAATCA 2583 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | |||||| |||| || | ||||| ||||||||||| | ||||| || || || Sbjct 2582 GCAAGTGTTCGGCCATCTTCAAGCTGTTTCCCAGCAAAGATCAGCCTCTGCTGGTCTGGG 2523 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || ||||| |||||| ||| |||||| || | ||||| || Sbjct 2522 GGAATACCTTCCTTGTCTTGAATTTTAGCTTTGACATTATCGATGGTGTCTGAGCTCTCG 2463 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || || ||||| || || || || || | ||||||| ||| || |||||| Sbjct 2462 ACCTCAAGAGTTATAGTCTTCCCGGTCAGAGTTTTAACAAAGATTTGCATT 2412 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||||||||| || | || | || | || | ||||| || || ||||| Sbjct 3098 ATGCCACCTCTAAGGCGAAGAACAAGGTGCAGGGTTGATTCTTTCTGAATGTTGTAATCT 3039 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | || || | | |||| || | ||| || ||||||||||| |||||||| || || || Sbjct 3038 GCCAACGTCCTTCCATCCTCAAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGGTCTGGA 2979 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || || ||||| || || ||| ||||| || | |||||| || Sbjct 2978 GGAATACCCTCCTTGTCTTGGATCTTTGCTTTAACATTGTCGATGGTATCTGAACTCTCA 2919 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || | |||||| || || || || ||||| || | |||||| ||||| Sbjct 2918 ACCTCCAAAGTAATTGTCTTCCCTGTCAATGTCTTGACAAATATTTGCAT 2869 Score = 93.3 bits (102), Expect = 8e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 192333 ATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTG 192392 ||| | ||||| |||||| ||| ||||| || | | || || |||| || | || Sbjct 3756 ATGAAGAGTAGACTCTTTCTGGATGTTATAGTCTGCAAGGGTGCGACCATCCTCAAGCTG 3697 Query 192393 TTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTT 192452 |||||||||||||| | ||||||||||| ||||| || ||||| || || ||||| || Sbjct 3696 CTTACCAGCAAAGATGAGCCTCTGTTGATCTGGTGGGATCCCTTCCTTGTCCTGTATCTT 3637 Query 192453 ATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGT 192512 ||| ||||| |||| ||| || || || || | || || || || ||||| Sbjct 3636 TGCTTTCACATTGTCAATAGTATCAGAGCTCTCCACCTCCAATGTGATTGTCTTCCCAGT 3577 Query 192513 TAATGTTTTAATAAATATCTGCAT 192536 | || || | ||| |||||||| Sbjct 3576 CAGAGTCTTCACAAAGATCTGCAT 3553 >seq3956 Length=148667 Score = 104 bits (114), Expect = 5e-17 Identities = 164/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 ||| || | ||||| || || | ||| | |||| ||| ||| || ||||| ||||||| Sbjct 117755 ACCTCCACAAAGACTCAAGACAAGATGAATTGTAGACTCCTTTTGA-ATATTGTAATCAG 117813 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | ||| | ||||| | |||||||| ||| || | | |||||| |||||||| | | Sbjct 117814 CAAGTGTATGATCATCCTTAAATTGTTTTCCACCATATACTAATCTTTGTTGATCTGAGG 117873 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTG-ACGATTCT 192486 | ||||||||||| |||| || || ||| ||||| || || | | || ||| Sbjct 117874 GAATTCCTTCTTTGTCTTCAATCTTTGCTTTAACATTGTCAATGGAGTTGGTACTCTTC- 117932 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || ||||||||||| || ||| | | ||||||| ||| || ||||| Sbjct 117933 ACATCCAGAGTAATGGTCTTTCCAATGAGAGTTTTAACAAAGATTTGCAT 117982 >seq544 Length=28317 Score = 96.9 bits (106), Expect = 7e-15 Identities = 133/185 (72%), Gaps = 2/185 (1%) Strand=Plus/Plus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 ||| || ||||||| | |||| | |||| || | ||||| ||||||||||| || || Sbjct 22262 GATGTTGTAATCAGCAATTGTTTGGCCATCTTCAAGCTGTTTCCCAGCAAAGATCAACCT 22321 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 | | ||||| || || || ||||| || ||||| || ||| |||||||||| |||| Sbjct 22322 CCGCTGATCTGGAGGAATGCCTTCCTTGTCTTGAATCTTAGCTTTTACATTATCAATAGT 22381 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTT--AATAAATATC 192531 || || || || || ||||| ||||| || || | | || || || ||||||| Sbjct 22382 GTCAGAGCTCTCGACCTCAAGAGTGATGGTCTTTCCGATGAGCGTCTTAAAACAAATATC 22441 Query 192532 TGCAT 192536 ||||| Sbjct 22442 TGCAT 22446 Score = 93.3 bits (102), Expect = 8e-14 Identities = 160/231 (69%), Gaps = 1/231 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || ||||||||||| | || | || | || | || ||| || || ||||| Sbjct 21616 ATGCCGCCTCTAAGACGAAGAACAAGGTGCAGGGTTGACTGTTTCTGAATGTTGTAATCT 21675 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | || || | | |||| || | ||| | |||||||| || |||||||| || | || Sbjct 21676 GCCAAGGTCCTTCCATCTTCAAGTTGCTCTCCAGCAAATATCAATCTCTGCTGGTTTGGA 21735 Query 192427 GGTAT-TCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 || || ||| |||| ||||| || || ||| ||||| | |||| |||||| || Sbjct 21736 GGAATACCCTCCTTTGTCTTGGATCTTTGCTTTAACATTGTTGATAGTATCTGAACTCTC 21795 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || | |||||| || || || || ||||| |||| |||||| ||||| Sbjct 21796 AACCTCCAAAGTAATTGTCTTCCCTGTCAATGTCTTAACAAATATTTGCAT 21846 >seq558 Length=67963 Score = 93.3 bits (102), Expect = 8e-14 Identities = 132/186 (71%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 ||| || || |||| || ||||| |||| || | || ||||| || || || |||| Sbjct 17136 GATGTTGTAGTCAGCTAGCGTTCGGCCATCCTCGAGCTGCTTACCGGCGAAAATCAATCG 17195 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 ||| || || ||||| || ||||| || ||||| || ||| || ||||| || | Sbjct 17196 CTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGAATCTTAGCCTTAACATTGTCAATGGT 17255 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 ||||| || ||||| |||| ||||| || || || || | || || | ||| ||||| Sbjct 17256 GTCTGATGACTCTACCTCTAAGGTAATAGTCTTGCCCGTCAGGGTCTTCACAAAGATCTG 17315 Query 192534 CATTTT 192539 |||||| Sbjct 17316 CATTTT 17321 Score = 93.3 bits (102), Expect = 8e-14 Identities = 132/186 (71%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 ||| || || |||| || ||||| |||| || | || || || ||||| || || || Sbjct 63816 GATGTTGTAGTCAGCTAGCGTTCGGCCATCCTCAAGCTGCTTTCCTGCAAAAATCAACCT 63757 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 ||| || || ||||| || ||||| || || || || ||| || ||||| || | Sbjct 63756 CTGCTGGTCTGGTGGGATGCCTTCCTTGTCCTGAATCTTAGCCTTAACATTGTCAATGGT 63697 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 ||||| || ||||| |||| ||||| || || || |||| || || | ||| ||||| Sbjct 63696 GTCTGATGACTCTACCTCTAAGGTAATAGTCTTGCCCGTTAGGGTCTTCACAAAGATCTG 63637 Query 192534 CATTTT 192539 |||||| Sbjct 63636 CATTTT 63631 >seq30006 Length=21699 Score = 91.5 bits (100), Expect = 3e-13 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 || || ||||||| || || ||| |||| || | || || || || ||||| |||| | Sbjct 12885 ATGTTGTAATCAGCTAGAGTACGTCCATCTTCGAGCTGCTTTCCGGCGAAGATCAATCGC 12826 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 || || || ||||| || ||||| || ||||| || ||| ||| ||||| |||| Sbjct 12825 TGCTGGTCCGGTGGAATACCTTCCTTGTCTTGAATCTTAGCTTTGACATTGTCAATAGTG 12766 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 || ||||| ||||| || || || || || || || | ||||| | || |||||| Sbjct 12765 TCGCTTGATTCAACTTCAAGCGTGATCGTCTTCCCCGTAAGAGTTTTCACGAAGATCTGC 12706 Query 192535 ATTTT 192539 ||||| Sbjct 12705 ATTTT 12701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 983937739186500