Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21]
42,990 sequences; 724,284,658 total letters
Query= NC_021248.1
Length=307691
Score E
Sequences producing significant alignments: (Bits) Value
seq545 123 5e-23
seq3956 104 5e-17
seq544 96.9 7e-15
seq558 93.3 8e-14
seq30006 91.5 3e-13
>seq545
Length=31085
Score = 123 bits (136), Expect = 5e-23
Identities = 165/230 (72%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
|| ||||| | ||||| | || | || | |||| |||||| ||| || ||||||
Sbjct 2186 ATTCCACCACGTAGACGGAGGACAAGRTGAAGGGTAGACTCTTTTTGGATGTTGTAATCA 2127
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
| | |||||| |||| || | ||||| ||||||||||| | |||||| ||||| ||
Sbjct 2126 GCAAGTGTTCGGCCATCTTCAAGCTGTTTCCCAGCAAAGATCAGTCTCTGCTGATCTGGA 2067
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| || ||||| || ||||| || ||| ||| |||||| || | || || ||
Sbjct 2066 GGAATGCCTTCCTTGTCTTGAATCTTAGCTTTGACATTATCAATGGTGTCAGAACTCTCG 2007
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
|| || ||||| ||||| || || || | ||| |||| ||||||||||||
Sbjct 2006 ACCTCAAGAGTGATGGTCTTTCCGGTGAGTGTCTTAACAAATATCTGCAT 1957
Score = 111 bits (122), Expect = 3e-19
Identities = 163/231 (71%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
|| ||||| | ||||| | || | || | |||| |||||| ||| || ||||||
Sbjct 2414 ATTCCACCACGTAGACGGAGGACAAGGTGAAGGGTAGACTCTTTTTGGATGTTGTAATCA 2355
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
| | |||||| |||| || | ||||| ||||||||||| | ||||| || || ||
Sbjct 2354 GCAAGTGTTCGGCCATCTTCAAGCTGTTTCCCAGCAAAGATCAGCCTCTGCTGGTCTGGG 2295
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| || ||||| || ||||| |||||| ||| |||||| || | ||||| ||
Sbjct 2294 GGAATACCTTCCTTGTCTTGAATTTTAGCTTTGACATTATCGATGGTGTCTGAGCTCTCG 2235
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537
|| || ||||| || || || || || | ||||||| ||| || ||||||
Sbjct 2234 ACCTCAAGAGTTATAGTCTTCCCGGTCAGAGTTTTAACAAAGATTTGCATT 2184
Score = 105 bits (116), Expect = 1e-17
Identities = 162/231 (70%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
|||||||| | ||| || | || | || | || | ||| || ||| || ||||||
Sbjct 2642 ATACCACCACGAAGGCGAAGGACAAGGTGAAGGGTGGACTCCTTTTGGATGTTGTAATCA 2583
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
| | |||||| |||| || | ||||| ||||||||||| | ||||| || || ||
Sbjct 2582 GCAAGTGTTCGGCCATCTTCAAGCTGTTTCCCAGCAAAGATCAGCCTCTGCTGGTCTGGG 2523
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| || ||||| || ||||| |||||| ||| |||||| || | ||||| ||
Sbjct 2522 GGAATACCTTCCTTGTCTTGAATTTTAGCTTTGACATTATCGATGGTGTCTGAGCTCTCG 2463
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537
|| || ||||| || || || || || | ||||||| ||| || ||||||
Sbjct 2462 ACCTCAAGAGTTATAGTCTTCCCGGTCAGAGTTTTAACAAAGATTTGCATT 2412
Score = 95.1 bits (104), Expect = 2e-14
Identities = 159/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
|| ||||||||||| || | || | || | || | ||||| || || |||||
Sbjct 3098 ATGCCACCTCTAAGGCGAAGAACAAGGTGCAGGGTTGATTCTTTCTGAATGTTGTAATCT 3039
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
| || || | | |||| || | ||| || ||||||||||| |||||||| || || ||
Sbjct 3038 GCCAACGTCCTTCCATCCTCAAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGGTCTGGA 2979
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| || || || || ||||| || || ||| ||||| || | |||||| ||
Sbjct 2978 GGAATACCCTCCTTGTCTTGGATCTTTGCTTTAACATTGTCGATGGTATCTGAACTCTCA 2919
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
|| || | |||||| || || || || ||||| || | |||||| |||||
Sbjct 2918 ACCTCCAAAGTAATTGTCTTCCCTGTCAATGTCTTGACAAATATTTGCAT 2869
Score = 93.3 bits (102), Expect = 8e-14
Identities = 143/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 192333 ATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTG 192392
||| | ||||| |||||| ||| ||||| || | | || || |||| || | ||
Sbjct 3756 ATGAAGAGTAGACTCTTTCTGGATGTTATAGTCTGCAAGGGTGCGACCATCCTCAAGCTG 3697
Query 192393 TTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTT 192452
|||||||||||||| | ||||||||||| ||||| || ||||| || || ||||| ||
Sbjct 3696 CTTACCAGCAAAGATGAGCCTCTGTTGATCTGGTGGGATCCCTTCCTTGTCCTGTATCTT 3637
Query 192453 ATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGT 192512
||| ||||| |||| ||| || || || || | || || || || |||||
Sbjct 3636 TGCTTTCACATTGTCAATAGTATCAGAGCTCTCCACCTCCAATGTGATTGTCTTCCCAGT 3577
Query 192513 TAATGTTTTAATAAATATCTGCAT 192536
| || || | ||| ||||||||
Sbjct 3576 CAGAGTCTTCACAAAGATCTGCAT 3553
>seq3956
Length=148667
Score = 104 bits (114), Expect = 5e-17
Identities = 164/230 (71%), Gaps = 4/230 (2%)
Strand=Plus/Plus
Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367
||| || | ||||| || || | ||| | |||| ||| ||| || ||||| |||||||
Sbjct 117755 ACCTCCACAAAGACTCAAGACAAGATGAATTGTAGACTCCTTTTGA-ATATTGTAATCAG 117813
Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427
| ||| | ||||| | |||||||| ||| || | | |||||| |||||||| | |
Sbjct 117814 CAAGTGTATGATCATCCTTAAATTGTTTTCCACCATATACTAATCTTTGTTGATCTGAGG 117873
Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTG-ACGATTCT 192486
| ||||||||||| |||| || || ||| ||||| || || | | || |||
Sbjct 117874 GAATTCCTTCTTTGTCTTCAATCTTTGCTTTAACATTGTCAATGGAGTTGGTACTCTTC- 117932
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
|| || ||||||||||| || ||| | | ||||||| ||| || |||||
Sbjct 117933 ACATCCAGAGTAATGGTCTTTCCAATGAGAGTTTTAACAAAGATTTGCAT 117982
>seq544
Length=28317
Score = 96.9 bits (106), Expect = 7e-15
Identities = 133/185 (72%), Gaps = 2/185 (1%)
Strand=Plus/Plus
Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413
||| || ||||||| | |||| | |||| || | ||||| ||||||||||| || ||
Sbjct 22262 GATGTTGTAATCAGCAATTGTTTGGCCATCTTCAAGCTGTTTCCCAGCAAAGATCAACCT 22321
Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473
| | ||||| || || || ||||| || ||||| || ||| |||||||||| ||||
Sbjct 22322 CCGCTGATCTGGAGGAATGCCTTCCTTGTCTTGAATCTTAGCTTTTACATTATCAATAGT 22381
Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTT--AATAAATATC 192531
|| || || || || ||||| ||||| || || | | || || || |||||||
Sbjct 22382 GTCAGAGCTCTCGACCTCAAGAGTGATGGTCTTTCCGATGAGCGTCTTAAAACAAATATC 22441
Query 192532 TGCAT 192536
|||||
Sbjct 22442 TGCAT 22446
Score = 93.3 bits (102), Expect = 8e-14
Identities = 160/231 (69%), Gaps = 1/231 (0%)
Strand=Plus/Plus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
|| || ||||||||||| | || | || | || | || ||| || || |||||
Sbjct 21616 ATGCCGCCTCTAAGACGAAGAACAAGGTGCAGGGTTGACTGTTTCTGAATGTTGTAATCT 21675
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
| || || | | |||| || | ||| | |||||||| || |||||||| || | ||
Sbjct 21676 GCCAAGGTCCTTCCATCTTCAAGTTGCTCTCCAGCAAATATCAATCTCTGCTGGTTTGGA 21735
Query 192427 GGTAT-TCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485
|| || ||| |||| ||||| || || ||| ||||| | |||| |||||| ||
Sbjct 21736 GGAATACCCTCCTTTGTCTTGGATCTTTGCTTTAACATTGTTGATAGTATCTGAACTCTC 21795
Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
|| || | |||||| || || || || ||||| |||| |||||| |||||
Sbjct 21796 AACCTCCAAAGTAATTGTCTTCCCTGTCAATGTCTTAACAAATATTTGCAT 21846
>seq558
Length=67963
Score = 93.3 bits (102), Expect = 8e-14
Identities = 132/186 (71%), Gaps = 0/186 (0%)
Strand=Plus/Plus
Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413
||| || || |||| || ||||| |||| || | || ||||| || || || ||||
Sbjct 17136 GATGTTGTAGTCAGCTAGCGTTCGGCCATCCTCGAGCTGCTTACCGGCGAAAATCAATCG 17195
Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473
||| || || ||||| || ||||| || ||||| || ||| || ||||| || |
Sbjct 17196 CTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGAATCTTAGCCTTAACATTGTCAATGGT 17255
Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533
||||| || ||||| |||| ||||| || || || || | || || | ||| |||||
Sbjct 17256 GTCTGATGACTCTACCTCTAAGGTAATAGTCTTGCCCGTCAGGGTCTTCACAAAGATCTG 17315
Query 192534 CATTTT 192539
||||||
Sbjct 17316 CATTTT 17321
Score = 93.3 bits (102), Expect = 8e-14
Identities = 132/186 (71%), Gaps = 0/186 (0%)
Strand=Plus/Minus
Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413
||| || || |||| || ||||| |||| || | || || || ||||| || || ||
Sbjct 63816 GATGTTGTAGTCAGCTAGCGTTCGGCCATCCTCAAGCTGCTTTCCTGCAAAAATCAACCT 63757
Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473
||| || || ||||| || ||||| || || || || ||| || ||||| || |
Sbjct 63756 CTGCTGGTCTGGTGGGATGCCTTCCTTGTCCTGAATCTTAGCCTTAACATTGTCAATGGT 63697
Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533
||||| || ||||| |||| ||||| || || || |||| || || | ||| |||||
Sbjct 63696 GTCTGATGACTCTACCTCTAAGGTAATAGTCTTGCCCGTTAGGGTCTTCACAAAGATCTG 63637
Query 192534 CATTTT 192539
||||||
Sbjct 63636 CATTTT 63631
>seq30006
Length=21699
Score = 91.5 bits (100), Expect = 3e-13
Identities = 131/185 (71%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414
|| || ||||||| || || ||| |||| || | || || || || ||||| |||| |
Sbjct 12885 ATGTTGTAATCAGCTAGAGTACGTCCATCTTCGAGCTGCTTTCCGGCGAAGATCAATCGC 12826
Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474
|| || || ||||| || ||||| || ||||| || ||| ||| ||||| ||||
Sbjct 12825 TGCTGGTCCGGTGGAATACCTTCCTTGTCTTGAATCTTAGCTTTGACATTGTCAATAGTG 12766
Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534
|| ||||| ||||| || || || || || || || | ||||| | || ||||||
Sbjct 12765 TCGCTTGATTCAACTTCAAGCGTGATCGTCTTCCCCGTAAGAGTTTTCACGAAGATCTGC 12706
Query 192535 ATTTT 192539
|||||
Sbjct 12705 ATTTT 12701
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 983937739186500
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