Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21] 42,990 sequences; 724,284,658 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq545 95.1 2e-14 seq30006 93.3 8e-14 seq544 93.3 8e-14 seq796 89.7 9e-13 seq558 89.7 9e-13 seq4902 86.0 1e-11 >seq545 Length=31085 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||||||||| || | || | || | || | ||||| ||| || |||||| Sbjct 3098 ATGCCACCTCTAAGGCGAAGAACAAGGTGCAGGGTTGATTCTTTCTGAATGTTGTAATCT 3039 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | || | | | | || || | ||| || |||||||| || |||||||| ||||| || Sbjct 3038 GCCAACGTCCTTCCATCCTCAAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGGTCTGGA 2979 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || || ||||| || || ||| ||||| || |||||||| || Sbjct 2978 GGAATACCCTCCTTGTCTTGGATCTTTGCTTTAACATTGTCGATGGTATCTGAACTCTCA 2919 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || | |||||| || || || || ||||| || | ||||| ||||| Sbjct 2918 ACCTCCAAAGTAATTGTCTTCCCTGTCAATGTCTTGACAAATATTTGCAT 2869 Score = 89.7 bits (98), Expect = 9e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 171873 GTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCA 171932 |||| |||||| || || ||||| | | | ||| | || || | ||||| ||| Sbjct 2153 GTAGACTCTTTTTGGATGTTGTAATCAGCAAGTGTTCGGCCATCTTCAAGCTGTTTCCCA 2094 Query 171933 GCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTT 171992 ||||| || | |||||| || || || || || ||||| || ||||| || ||| ||| Sbjct 2093 GCAAAGATCAGTCTCTGCTGATCTGGAGGAATGCCTTCCTTGTCTTGAATCTTAGCTTTG 2034 Query 171993 ACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTT 172052 |||||| || || || || || || || ||||| ||||| || || || | ||| Sbjct 2033 ACATTATCAATGGTGTCAGAACTCTCGACCTCAAGAGTGATGGTCTTTCCGGTGAGTGTC 1974 Query 172053 TTAATGAATATCTGCAT 172069 |||| ||||||||||| Sbjct 1973 TTAACAAATATCTGCAT 1957 >seq30006 Length=21699 Score = 93.3 bits (102), Expect = 8e-14 Identities = 132/186 (71%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 ||| || ||||| | || || ||| | || || | || || || || || || |||| Sbjct 12886 AATGTTGTAATCAGCTAGAGTACGTCCATCTTCGAGCTGCTTTCCGGCGAAGATCAATCG 12827 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 ||| ||||| ||||| || ||||| || ||||| || ||| ||| ||||| ||||| Sbjct 12826 CTGCTGGTCCGGTGGAATACCTTCCTTGTCTTGAATCTTAGCTTTGACATTGTCAATAGT 12767 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 || ||||| ||||| || || || || || || || | ||||| | ||| ||||| Sbjct 12766 GTCGCTTGATTCAACTTCAAGCGTGATCGTCTTCCCCGTAAGAGTTTTCACGAAGATCTG 12707 Query 172067 CATTTT 172072 |||||| Sbjct 12706 CATTTT 12701 >seq544 Length=28317 Score = 93.3 bits (102), Expect = 8e-14 Identities = 160/231 (69%), Gaps = 1/231 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || || |||||||| || | || | || | || | || ||| ||| || |||||| Sbjct 21616 ATGCCGCCTCTAAGACGAAGAACAAGGTGCAGGGTTGACTGTTTCTGAATGTTGTAATCT 21675 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | || | | | | || || | ||| | |||||||| || |||||||| |||| || Sbjct 21676 GCCAAGGTCCTTCCATCTTCAAGTTGCTCTCCAGCAAATATCAATCTCTGCTGGTTTGGA 21735 Query 171960 GGTATTCCTTC-TTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTC 172018 || || || || ||| ||||| || || ||| ||||| | ||||||||||| || Sbjct 21736 GGAATACCCTCCTTTGTCTTGGATCTTTGCTTTAACATTGTTGATAGTATCTGAACTCTC 21795 Query 172019 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || | |||||| || || || || ||||| |||| ||||| ||||| Sbjct 21796 AACCTCCAAAGTAATTGTCTTCCCTGTCAATGTCTTAACAAATATTTGCAT 21846 >seq796 Length=44438 Score = 89.7 bits (98), Expect = 9e-13 Identities = 130/184 (71%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 |||||| ||||| | ||| | | | | || ||||| || || ||||||||||| || || Sbjct 19927 AATATTGTAATCGGCTAATGTCCTTCCATCTTCCAACTGCTTGCCAGCAAAAATCAACCT 19868 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 || ||||| ||||| || || ||||| || || || || ||||| || || || Sbjct 19867 TTGCTGGTCTGGTGGGATACCCTCTTTGTCCTGAATCTTGGCCTTTACGTTGTCAATGGT 19808 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 || || ||| || || || ||||| || || ||||| || || || | ||| || || Sbjct 19807 GTCGGAGCTTTCCACCTCAAGGGTAATAGTCTTGCCAGTCAAGGTCTTCACGAAGATTTG 19748 Query 172067 CATT 172070 |||| Sbjct 19747 CATT 19744 >seq558 Length=67963 Score = 89.7 bits (98), Expect = 9e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983 || ||||| || ||||| |||| ||| ||||| ||||| || ||||| || ||||| || Sbjct 17173 TGCTTACCGGCGAAAATCAATCGCTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGAATC 17232 Query 171984 TTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 172043 ||| || ||||| || || ||||| || ||||| |||| ||||| || || || Sbjct 17233 TTAGCCTTAACATTGTCAATGGTGTCTGATGACTCTACCTCTAAGGTAATAGTCTTGCCC 17292 Query 172044 GTTAATGTTTTAATGAATATCTGCATTTT 172072 || | || || | || ||||||||||| Sbjct 17293 GTCAGGGTCTTCACAAAGATCTGCATTTT 17321 Score = 89.7 bits (98), Expect = 9e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983 || || || |||||||| || ||||| ||||| ||||| || ||||| || || || || Sbjct 63779 TGCTTTCCTGCAAAAATCAACCTCTGCTGGTCTGGTGGGATGCCTTCCTTGTCCTGAATC 63720 Query 171984 TTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 172043 ||| || ||||| || || ||||| || ||||| |||| ||||| || || || Sbjct 63719 TTAGCCTTAACATTGTCAATGGTGTCTGATGACTCTACCTCTAAGGTAATAGTCTTGCCC 63660 Query 172044 GTTAATGTTTTAATGAATATCTGCATTTT 172072 |||| || || | || ||||||||||| Sbjct 63659 GTTAGGGTCTTCACAAAGATCTGCATTTT 63631 >seq4902 Length=4857 Score = 86.0 bits (94), Expect = 1e-11 Identities = 100/132 (76%), Gaps = 5/132 (4%) Strand=Plus/Plus Query 171943 ATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTA 172002 |||| || ||||| | || || |||||||| |||||||| || || |||| | Sbjct 1022 ATCT-TGCTGGTCTAGAGGGATCCCTTCTTTGTCTTGTATCTTGGCCTTAGCATTGTCGA 1080 Query 172003 TAGTAT--CTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAA 172060 |||||| |||| |||| ||||| |||||||||||||||| || | ||||| || || Sbjct 1081 TAGTATTGCTGA--ATTCGACTTCCAGAGTAATGGTTTTACTGGTCAGAGTTTTCATAAA 1138 Query 172061 TATCTGCATTTT 172072 |||||||||||| Sbjct 1139 TATCTGCATTTT 1150 Score = 84.2 bits (92), Expect = 4e-11 Identities = 107/144 (74%), Gaps = 5/144 (3%) Strand=Plus/Plus Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983 || |||||||||||||| | || || ||||| || || || ||||||| |||||||| Sbjct 885 TGCTTACCAGCAAAAATCAGCCTTTGCTGGTCTGGAGGGTTTTCTTCTTTGTCTTGTATC 944 Query 171984 TTATTTTTTACATTAGTTATAGTAT--CTGACGATTCTACTTCTAGAGTAATGGTTTTAC 172041 || || |||| ||||||| |||| |||| || || ||||||||||||||| Sbjct 945 TTGGCCTTAGCATTGTCGATAGTATTGCTGA--ATTCGACATCCAGAGTAATGGTTTTA- 1001 Query 172042 CAGTTAATGTTTTAATGAATATCT 172065 | | || ||||| | |||||||| Sbjct 1002 CTGGTAGAGTTTTCACGAATATCT 1025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904649602542000