Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21]
42,990 sequences; 724,284,658 total letters
Query= NC_021249.1
Length=282895
Score E
Sequences producing significant alignments: (Bits) Value
seq545 95.1 2e-14
seq30006 93.3 8e-14
seq544 93.3 8e-14
seq796 89.7 9e-13
seq558 89.7 9e-13
seq4902 86.0 1e-11
>seq545
Length=31085
Score = 95.1 bits (104), Expect = 2e-14
Identities = 159/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
|| ||||||||||| || | || | || | || | ||||| ||| || ||||||
Sbjct 3098 ATGCCACCTCTAAGGCGAAGAACAAGGTGCAGGGTTGATTCTTTCTGAATGTTGTAATCT 3039
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
| || | | | | || || | ||| || |||||||| || |||||||| ||||| ||
Sbjct 3038 GCCAACGTCCTTCCATCCTCAAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGGTCTGGA 2979
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019
|| || || || || ||||| || || ||| ||||| || |||||||| ||
Sbjct 2978 GGAATACCCTCCTTGTCTTGGATCTTTGCTTTAACATTGTCGATGGTATCTGAACTCTCA 2919
Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
|| || | |||||| || || || || ||||| || | ||||| |||||
Sbjct 2918 ACCTCCAAAGTAATTGTCTTCCCTGTCAATGTCTTGACAAATATTTGCAT 2869
Score = 89.7 bits (98), Expect = 9e-13
Identities = 138/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 171873 GTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCA 171932
|||| |||||| || || ||||| | | | ||| | || || | ||||| |||
Sbjct 2153 GTAGACTCTTTTTGGATGTTGTAATCAGCAAGTGTTCGGCCATCTTCAAGCTGTTTCCCA 2094
Query 171933 GCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTT 171992
||||| || | |||||| || || || || || ||||| || ||||| || ||| |||
Sbjct 2093 GCAAAGATCAGTCTCTGCTGATCTGGAGGAATGCCTTCCTTGTCTTGAATCTTAGCTTTG 2034
Query 171993 ACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTT 172052
|||||| || || || || || || || ||||| ||||| || || || | |||
Sbjct 2033 ACATTATCAATGGTGTCAGAACTCTCGACCTCAAGAGTGATGGTCTTTCCGGTGAGTGTC 1974
Query 172053 TTAATGAATATCTGCAT 172069
|||| |||||||||||
Sbjct 1973 TTAACAAATATCTGCAT 1957
>seq30006
Length=21699
Score = 93.3 bits (102), Expect = 8e-14
Identities = 132/186 (71%), Gaps = 0/186 (0%)
Strand=Plus/Minus
Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946
||| || ||||| | || || ||| | || || | || || || || || || ||||
Sbjct 12886 AATGTTGTAATCAGCTAGAGTACGTCCATCTTCGAGCTGCTTTCCGGCGAAGATCAATCG 12827
Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006
||| ||||| ||||| || ||||| || ||||| || ||| ||| ||||| |||||
Sbjct 12826 CTGCTGGTCCGGTGGAATACCTTCCTTGTCTTGAATCTTAGCTTTGACATTGTCAATAGT 12767
Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066
|| ||||| ||||| || || || || || || || | ||||| | ||| |||||
Sbjct 12766 GTCGCTTGATTCAACTTCAAGCGTGATCGTCTTCCCCGTAAGAGTTTTCACGAAGATCTG 12707
Query 172067 CATTTT 172072
||||||
Sbjct 12706 CATTTT 12701
>seq544
Length=28317
Score = 93.3 bits (102), Expect = 8e-14
Identities = 160/231 (69%), Gaps = 1/231 (0%)
Strand=Plus/Plus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
|| || |||||||| || | || | || | || | || ||| ||| || ||||||
Sbjct 21616 ATGCCGCCTCTAAGACGAAGAACAAGGTGCAGGGTTGACTGTTTCTGAATGTTGTAATCT 21675
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
| || | | | | || || | ||| | |||||||| || |||||||| |||| ||
Sbjct 21676 GCCAAGGTCCTTCCATCTTCAAGTTGCTCTCCAGCAAATATCAATCTCTGCTGGTTTGGA 21735
Query 171960 GGTATTCCTTC-TTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTC 172018
|| || || || ||| ||||| || || ||| ||||| | ||||||||||| ||
Sbjct 21736 GGAATACCCTCCTTTGTCTTGGATCTTTGCTTTAACATTGTTGATAGTATCTGAACTCTC 21795
Query 172019 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
|| || | |||||| || || || || ||||| |||| ||||| |||||
Sbjct 21796 AACCTCCAAAGTAATTGTCTTCCCTGTCAATGTCTTAACAAATATTTGCAT 21846
>seq796
Length=44438
Score = 89.7 bits (98), Expect = 9e-13
Identities = 130/184 (71%), Gaps = 0/184 (0%)
Strand=Plus/Minus
Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946
|||||| ||||| | ||| | | | | || ||||| || || ||||||||||| || ||
Sbjct 19927 AATATTGTAATCGGCTAATGTCCTTCCATCTTCCAACTGCTTGCCAGCAAAAATCAACCT 19868
Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006
|| ||||| ||||| || || ||||| || || || || ||||| || || ||
Sbjct 19867 TTGCTGGTCTGGTGGGATACCCTCTTTGTCCTGAATCTTGGCCTTTACGTTGTCAATGGT 19808
Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066
|| || ||| || || || ||||| || || ||||| || || || | ||| || ||
Sbjct 19807 GTCGGAGCTTTCCACCTCAAGGGTAATAGTCTTGCCAGTCAAGGTCTTCACGAAGATTTG 19748
Query 172067 CATT 172070
||||
Sbjct 19747 CATT 19744
>seq558
Length=67963
Score = 89.7 bits (98), Expect = 9e-13
Identities = 109/149 (73%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983
|| ||||| || ||||| |||| ||| ||||| ||||| || ||||| || ||||| ||
Sbjct 17173 TGCTTACCGGCGAAAATCAATCGCTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGAATC 17232
Query 171984 TTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 172043
||| || ||||| || || ||||| || ||||| |||| ||||| || || ||
Sbjct 17233 TTAGCCTTAACATTGTCAATGGTGTCTGATGACTCTACCTCTAAGGTAATAGTCTTGCCC 17292
Query 172044 GTTAATGTTTTAATGAATATCTGCATTTT 172072
|| | || || | || |||||||||||
Sbjct 17293 GTCAGGGTCTTCACAAAGATCTGCATTTT 17321
Score = 89.7 bits (98), Expect = 9e-13
Identities = 109/149 (73%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983
|| || || |||||||| || ||||| ||||| ||||| || ||||| || || || ||
Sbjct 63779 TGCTTTCCTGCAAAAATCAACCTCTGCTGGTCTGGTGGGATGCCTTCCTTGTCCTGAATC 63720
Query 171984 TTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 172043
||| || ||||| || || ||||| || ||||| |||| ||||| || || ||
Sbjct 63719 TTAGCCTTAACATTGTCAATGGTGTCTGATGACTCTACCTCTAAGGTAATAGTCTTGCCC 63660
Query 172044 GTTAATGTTTTAATGAATATCTGCATTTT 172072
|||| || || | || |||||||||||
Sbjct 63659 GTTAGGGTCTTCACAAAGATCTGCATTTT 63631
>seq4902
Length=4857
Score = 86.0 bits (94), Expect = 1e-11
Identities = 100/132 (76%), Gaps = 5/132 (4%)
Strand=Plus/Plus
Query 171943 ATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTA 172002
|||| || ||||| | || || |||||||| |||||||| || || |||| |
Sbjct 1022 ATCT-TGCTGGTCTAGAGGGATCCCTTCTTTGTCTTGTATCTTGGCCTTAGCATTGTCGA 1080
Query 172003 TAGTAT--CTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAA 172060
|||||| |||| |||| ||||| |||||||||||||||| || | ||||| || ||
Sbjct 1081 TAGTATTGCTGA--ATTCGACTTCCAGAGTAATGGTTTTACTGGTCAGAGTTTTCATAAA 1138
Query 172061 TATCTGCATTTT 172072
||||||||||||
Sbjct 1139 TATCTGCATTTT 1150
Score = 84.2 bits (92), Expect = 4e-11
Identities = 107/144 (74%), Gaps = 5/144 (3%)
Strand=Plus/Plus
Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983
|| |||||||||||||| | || || ||||| || || || ||||||| ||||||||
Sbjct 885 TGCTTACCAGCAAAAATCAGCCTTTGCTGGTCTGGAGGGTTTTCTTCTTTGTCTTGTATC 944
Query 171984 TTATTTTTTACATTAGTTATAGTAT--CTGACGATTCTACTTCTAGAGTAATGGTTTTAC 172041
|| || |||| ||||||| |||| |||| || || |||||||||||||||
Sbjct 945 TTGGCCTTAGCATTGTCGATAGTATTGCTGA--ATTCGACATCCAGAGTAATGGTTTTA- 1001
Query 172042 CAGTTAATGTTTTAATGAATATCT 172065
| | || ||||| | ||||||||
Sbjct 1002 CTGGTAGAGTTTTCACGAATATCT 1025
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 904649602542000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |