Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21] 42,990 sequences; 724,284,658 total letters Query= NC_021559.1 Length=179063 Score E Sequences producing significant alignments: (Bits) Value seq13533 214 2e-50 seq11014 158 1e-33 seq20193 138 1e-27 seq31657 109 6e-19 seq24530 109 6e-19 seq18655 102 9e-17 seq15728 98.7 1e-15 seq8181 89.7 6e-13 seq20218 84.2 3e-11 >seq13533 Length=23790 Score = 214 bits (236), Expect = 2e-50 Identities = 540/820 (66%), Gaps = 29/820 (4%) Strand=Plus/Minus Query 73588 ATTGTTCCTTTGGGGACCAGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGG 73647 ||||||||| ||||| || || |||||||||||| || || || | |||||| || || Sbjct 17798 ATTGTTCCTATGGGGTCCTGAAGCACAAGGAGATTTTACGCGTTGATGTCAATTGGGGGG 17739 Query 73648 AC----TATGGAACTTTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTTA 73703 | |||| ||| | || | ||||||| ||||| | |||||||||||| | Sbjct 17738 GGGGTGTGTGGACATTTTTTGCTCTCCATGGAGCTTTTGGCTTAATAGGTTTCATGTTAC 17679 Query 73704 GACAGTTTGAGATTGCAGGACTTGTTGGGATACGTCCTTACAACGCATTAGCTTTTTCAG 73763 | || || ||| |||| || |||| | | ||||| || ||| | || || || Sbjct 17678 GTCAATTCGAGTTTGCTCGATCTGTTCAATTGAGACCTTATAATGCAATCGCATTCTCT- 17620 Query 73764 CAGTT--ATCGCAGTATTCACGAGCATCTTTCTAATATATCCTTTAGGACAGCATAGTTG 73821 ||| || | || || | ||| | || ||||| |||| ||| | |||| Sbjct 17619 -AGTCCAATTGTTGTTTTTGTTTCTGTATTTTTTATTTATCCACTAGGTCAGTCTGGTTG 17561 Query 73822 GTTCTTCGCACCTTCATTCGGTGTCGCAGCAATCTTTCGTTATATTTTATTCATACAGGG 73881 |||| | |||||| || |||| ||||| || ||||| | || |||| | || || Sbjct 17560 GTTCGTTGCACCTAGTTTTGGTGAAGCAGCTATATTTCGATTCATCCTATTTTTTCATGG 17501 Query 73882 TTTCCACAATATAACTCTTAATCCATTTCATATGATGGGTGTAGCAGGTATACTTGGTGG 73941 || || ||| ||| |||| || ||||||||||||| || | ||| || | || | Sbjct 17500 GTTTCATAATTGAACCATTAACCCCTTTCATATGATGGAAGTTGTCGGTGTATTGGGCGC 17441 Query 73942 AGCATTACTATGTGCCATACATGGTGCAACAGTACAGAACACATTGTATGAAGACACATC 74001 | || ||||| | ||| ||||||| || || | || || || | ||||| Sbjct 17440 TGTTTTGCTATGCGTCATTCATGGTGTTACCATAGAAAATACTTTATTTGAAG------- 17388 Query 74002 ACAATACACTGAAGGTAAGATTCAATCTACAACTTTCAGAGCATTCGATCCTACACAGGA 74061 || ||| || | ||| |||| ||| | || || | || || || | Sbjct 17387 -----ACGGTGATGG-----TGCAA-ATACA---TTCCGTGCTTTTAACCCAACTCAAGC 17342 Query 74062 AGAAGAGACTTATAGTATGATTACTGCTAACAGATTCTGGTCACAGATATTTGGTATAGC 74121 ||||| |||||| ||| | | ||||| | || ||||| || |||||||| | | Sbjct 17341 CGAAGAAACTTATTCAATGGTCATCGCTAATCGCTTTTGGTCCCAAATATTTGGGGTTTC 17282 Query 74122 ATTTTCAAACAAAAGATTCTTACACTTCCTTATGTTGTTCGTACCTGTCATGGGTATGTG 74181 ||||| || ||| | | ||||| ||| |||||||||| ||||| || | || | || Sbjct 17281 TTTTTCCAATAAACGTTGATTACATTTCTTTATGTTGTTTGTACCAGTGACCAGTTTATG 17222 Query 74182 GACATCATCTATAGGTATCGTAGGTCTAGCACTTAACCTTAGAGCATACGACTTTGTATC 74241 || || | || | || |||||||| | ||||| | || || ||| | || || Sbjct 17221 GATGAGTGCTCTTGGAGTAGTCGGTCTAGCTMTGAACCTACGTGCCTATGACATCGTTTC 17162 Query 74242 TCAAGAGATAAGAGCAGCAGAAGACCCAGAGTTTGAAACCTTCTACACTAAGAACATTCT 74301 ||| || || | | | ||||||| || || ||||| || |||||||| || || ||||| Sbjct 17161 TCAGGAAATTTGCGTACCAGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCT 17102 Query 74302 TCTTAATGAAGGTATGAGAGCATGGATGTCATCTGTCGATCAACCCCATGAGAACTTTGT 74361 | || |||||||| | || |||||| || || ||||| || || | ||| || | Sbjct 17101 CTTAAACGAAGGTATTCGCGCTTGGATGGCAGCTCAAGATCAGCCTTATTAAAACCTTAT 17042 Query 74362 GTTCCCAGAAGAAGTCTTGCCACGAGGCAACGCACTATAA 74401 ||||| || || || | ||||| || ||||| || ||| Sbjct 17041 ATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAA 17002 >seq11014 Length=29319 Score = 158 bits (174), Expect = 1e-33 Identities = 266/385 (69%), Gaps = 2/385 (1%) Strand=Plus/Plus Query 72255 CACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTAATGATCCCATGTCTTCTA-A 72313 |||||| || || | ||| |||| |||||||||| || |||||||| | ||| | | Sbjct 10056 CACTGAAAACCGTCTTTACATTGGACGGTTTGGTGTTTTGATGATCCC-TACCTTATTGA 10114 Query 72314 CTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCCTCCAGTCGATATCGACGGAA 72373 | || || || || ||| | || ||||| | |||||||||||| || || || || | Sbjct 10115 CGGCWACTTCTGTATTTATTATTGCCTTCATTGTTGCTCCTCCAGTAGACATTGATGGTA 10174 Query 72374 TCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAACATCATCTCTGGTGCTGTAG 72433 | | ||||| ||| | || ||| | | || || |||||||| || || ||||| | Sbjct 10175 TTGGTGAACCTGTTTCAGGGTCTCTACTTTACGGAAACAACATTATTTCCGGTGCCATTA 10234 Query 72434 TTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCATCTGGGAAGCAGCCACTATGG 72493 |||| |||| || ||||| ||||| || || || ||||||||||| || | | | Sbjct 10235 TTCCTACTTCTGCAGCTATAGGTTTACATTTTTACCCAATCTGGGAAGCGGCATCCGTTG 10294 Query 72494 ACGAGTGGTTGTATAACGGAGGTCCTTACCAGTTAGTTATTTTCCACTTCCTTATTGGAA 72553 | || ||||| | ||||| |||||||| | || || || | |||||| | |||| Sbjct 10295 ATGAATGGTTATTCAACGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGCG 10354 Query 72554 TCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACAGACTAGGAATGAGACCTTGGA 72613 | || ||||||||| ||||||| || | | | | || ||| ||||||||| Sbjct 10355 TAGCTTGTTACATGGGTCRTGAGTGGGAGCTTAGCTTCCGTSTRGGTATGCGACCTTGGA 10414 Query 72614 TATGTGTAGCATACTCAGCACCTGT 72638 | ||| ||||| ||||| | ||| Sbjct 10415 TTGCTGTTGCATATTCAGCTCTTGT 10439 >seq20193 Length=7469 Score = 138 bits (152), Expect = 1e-27 Identities = 257/373 (69%), Gaps = 5/373 (1%) Strand=Plus/Minus Query 72244 TGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTAATGATCCCA 72303 ||| |||| |||||| || || | ||| |||| ||||||||||| || |||||| | Sbjct 6827 TGGATAACTAGCACTGA-AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCTC- 6770 Query 72304 TGTCTTCTA-ACTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCCTCCAGTCGA 72362 | ||| | || || || | || ||| | || ||||| |||||||||||||| || Sbjct 6769 TACCTTATTGACGGCAACTTYTGTATTTATTATTGCCTTCATTGCTGCTCCTCCAGTAGA 6710 Query 72363 TATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAACATCATCTC 72422 || || || || | ||||| ||| | || ||| | | | || |||||||| || || Sbjct 6709 CATTGATGGTATTCGTGAACCTGTTTCAGGGTCTCTACTTHACGGAAACAACATTATTTC 6650 Query 72423 TGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCATCTGGGAAGC 72482 ||||| | |||| |||| || ||||| ||||| || || || ||||||||||| Sbjct 6649 CGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTACATTTTTACCCAATCTGGGAAGC 6590 Query 72483 AGCCACTATGGACGAGTGGTTGTATAACGGAGGTCCTTACCAGTTAGTTATTTTCCACTT 72542 | | | || || ||||| || |||| |||||||| | || || || | ||||| Sbjct 6589 GACATCCGTTGATGAATGGTTATACAACGRTGGTCCTTATGAACTAATTGTTCTACACTT 6530 Query 72543 CCTTATTGGAATCTCTGCCTACATGGGTAGACAGTGGGAAC-TATCATACAGACTAGGAA 72601 | | |||| | || ||||||||| | ||||||| | || | | || || || | Sbjct 6529 CTTACTTGGCGTAGCTTGTTACATGGGTCGTGAGTGGGAGCTTAGCTTCCA-TCTGGGTA 6471 Query 72602 TGAGACCTTGGAT 72614 || ||||||||| Sbjct 6470 TGCAACCTTGGAT 6458 >seq31657 Length=14304 Score = 109 bits (120), Expect = 6e-19 Identities = 103/132 (78%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 72652 GCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGT 72711 ||||| ||| | | || ||| ||||||| || || |||||||||||||| ||||| Sbjct 297 GCAGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGA 356 Query 72712 ATCTCAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCAC 72771 ||||| ||||| ||||| |||||| | | ||||| || ||||||||||| || |||||| Sbjct 357 ATCTCTGGTACTTTCAATTTCATGATTVTATTCCAGGCTGAACACAACATCCTTATGCAC 416 Query 72772 CCCTTCCATATG 72783 || || || ||| Sbjct 417 CCATTTCACATG 428 >seq24530 Length=26533 Score = 109 bits (120), Expect = 6e-19 Identities = 199/291 (68%), Gaps = 1/291 (0%) Strand=Plus/Minus Query 72718 GGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCCCTTC 72777 ||||| ||||| |||||| | || ||||| || || |||||||| || |||||||| || Sbjct 795 GGTACTTTCAATTTCATGATTGTATTCCAGGCTGAVCACAACATCCTTATGCACCCATTT 736 Query 72778 CATATGGCAGGTGTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACGGTTCA 72837 || || ||| |||| ||| | | || || |||||| | ||||| | |||| Sbjct 735 CACATCTTAGGCCTAGCTGGTGTAAAATGCGGCTCCCTATTCAGTACTATGCATGCTTCA 676 Query 72838 CTTGTTACTTCATCTCTAATCAGAGAGACAACAGAGAACGAGAGTCAAAACTACGGCTAT 72897 |||| ||||| | | || || || | ||| | || || | || | || || Sbjct 675 TTTGTAACTTCTAGTTTTATAAGGGAAAGCACATAAAATGAATCTGCTAATGAAGGTTAC 616 Query 72898 AAGTTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGGTAGA 72957 | |||| ||||| |||||||| || || || || || | ||||| || || || || Sbjct 615 AGATTCGATCAAGAGGAAGAAACTTAGAATATCGTAGCCGATCATGCTTATTTTGGCTGA 556 Query 72958 TTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTC 73008 || |||||||| |||| || |||||||||| ||| |||| ||||| Sbjct 555 TTGATCTTCCAATATGATAGTTTTAACAACTCTCATTC-GTACATATCTTC 506 >seq18655 Length=20627 Score = 102 bits (112), Expect = 9e-17 Identities = 152/211 (72%), Gaps = 6/211 (3%) Strand=Plus/Minus Query 73790 TTTCTAATATATCCTTTAGGACAGCATAGTTGGTTCTTCGCACCTTCATTCGGTGTCGCA 73849 ||||| || ||||| |||| ||| | |||||||||| |||||| || ||||| ||| Sbjct 18847 TTTCTCATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCACCTAGTTTTGGTGTAGCA 18788 Query 73850 GCAATCTTTCGTTATATTTTATTCATACAGGGTTTCCACAATATAACTCTTAATCCA-TT 73908 || || ||||| | || |||| | || |||||| | ||| || ||| |||| || Sbjct 18787 GCTATATTTCGATTCATCCTATTTTTTCAAGGTTTC-ATAATTGGAC-CTTGATCCCCTT 18730 Query 73909 TCATATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTATGTG---CCATACATGG 73965 |||||||||||| || || ||| || | | | || || ||||| | |||| ||||| Sbjct 18729 TCATATGATGGGAGTTGCCGGTGTATTGAGCGCTGCTTTGCTATGCGCCACCATTCATGG 18670 Query 73966 TGCAACAGTACAGAACACATTGTATGAAGAC 73996 ||| || ||| | || || || | ||||||| Sbjct 18669 TGCTACCGTAGAAAATACTTTATTTGAAGAC 18639 >seq15728 Length=57915 Score = 98.7 bits (108), Expect = 1e-15 Identities = 143/201 (71%), Gaps = 1/201 (0%) Strand=Plus/Plus Query 72901 TTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGGTAGATTA 72960 ||| | ||||| ||| |||| ||||| ||||| | | |||||| || || || |||| Sbjct 13140 TTCTGTCAAGAGGAAAAAACTTATAATATTGTAGTCGTTCATGGTTATTTTGGCTGATTG 13199 Query 72961 ATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCGCTGTATTC 73020 |||| || |||| ||||| |||||||||| |||||||||||||| |||| | Sbjct 13200 ATCTACCGATATGTTAGTTTCAATGACTCTCGTTCGTTACACTTCTTCCTTGCTGCTTGG 13259 Query 73021 CCTGTAGTCTGTGTATGGTTAACCTC-AATGGGTATCTGTACAATGGCATTCAACCTTAA 73079 | | |||| || | ||||| ||| | | ||||| | |||||| ||||| || || Sbjct 13260 CATATAGTAGGTATCTGGTTTACCACTTTTAGGTATTAGCACAATGCTTTTCAATCTAAA 13319 Query 73080 CGGATTCAACTTCAACCAATC 73100 ||||| |||| |||||| Sbjct 13320 AAATTTCAATTTCAGCCAATC 13340 >seq8181 Length=32328 Score = 89.7 bits (98), Expect = 6e-13 Identities = 194/289 (67%), Gaps = 1/289 (0%) Strand=Plus/Minus Query 72718 GGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCCCTTC 72777 ||||| | ||| |||||| | | |||| || || ||||||| || |||||||| || Sbjct 12081 GGTACTTCCAATTTCATGATTCTATTCCTTGCTGAGTACAACATCCTTATGCACCCATTT 12022 Query 72778 CATATGGCAGGTGTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACGGTTCA 72837 || || ||| |||| || | | || || || ||| ||||| | ||| Sbjct 12021 CACATCTTAGGCCTAGCTTGTGTAAAAAGCGGCTCCCTATTATGTGTTATGCATGCTTCC 11962 Query 72838 CTTGTTACTTCATCTCTAATCAGAGAGACAACAGAGAACGAGAGTCAAAACTACGGCTAT 72897 | || ||||| | | ||||| || || ||||| || || | || | || || Sbjct 11961 TTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTAC 11902 Query 72898 AAGTTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGGTAGA 72957 | || || |||| ||||||||||| || || || |||||| || || || || | | Sbjct 11901 AGATTTGGTTAAGAGGAAGAAACATAGAATATCGTAGCTGCTTATTCTTATTTTGGCAAA 11842 Query 72958 TTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCT 73006 |||||||| || ||||| |||||||||||| |||| ||||| ||| Sbjct 11841 TTAATCTTTCAATATGCTAGTTTCAACAACTCTTGTTC-GTACACATCT 11794 >seq20218 Length=9351 Score = 84.2 bits (92), Expect = 3e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 73132 ACATGGGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAAT 73191 || |||| ||| | | ||| | || |||||||| |||||||||||||||||| | ||| Sbjct 2122 ACTTGGGTTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 2181 Query 73192 GCACACAACTTCCCACTAGACCTAGC 73217 || || |||||||| ||||||||||| Sbjct 2182 GCTCATAACTTCCCTCTAGACCTAGC 2207 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572565752049200