Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21] 42,990 sequences; 724,284,658 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq728 113 6e-19 seq110 86.0 8e-11 >seq728 Length=46982 Score = 113 bits (124), Expect = 6e-19 Identities = 176/249 (71%), Gaps = 2/249 (1%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 || ||||| ||||| |||||||| ||||| || || || || | ||||| || || ||| Sbjct 2549 GAATGGATATTCTCAATGGCGATTTGGAACCCATAGAAAGCACGAACCTCGGCAACCTGG 2608 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 || || |||||||||| || || |||||||| ||||||||||| ||| || ||| Sbjct 2609 ACGTCTTTCATGAACCTTCCAGCGAGGTTCTCTAAAACGATGCCGTCTGAGGCAGCAAAA 2668 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 || || || || || |||| || || | || || | || |||||| |||| Sbjct 2669 AAGGCAAGAACATGAGTGATGAAATGCCTTTCACCGGATGTTAGGTTTTCCCAGT-GACG 2727 Query 869813 -GTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTA 869871 || |||| | ||| || || || || | ||||||| || ||| ||| || ||||| Sbjct 2728 AGTATCGGTGGAGAGATCGACTTCTTCTACCGTCCAGAAAGATGCCATGGCTTTCTTGTA 2787 Query 869872 CATCTCCCA 869880 ||| ||||| Sbjct 2788 CATTTCCCA 2796 >seq110 Length=69155 Score = 86.0 bits (94), Expect = 8e-11 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 || || |||||||| | |||||| |||||| ||||| || || |||| || || Sbjct 12056 GCGGCTAACTACCTGAATATCAAGAGTCTGCTTGATCTGACCTGTCAGACTGTTGCAGAC 12115 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAGTACG 1592300 |||||||| || ||| | || |||||||| || ||||| |||||||||||| ||| Sbjct 12116 ATGATCAAAGGAAAGACTCCGGAGGAGATTCGAAAGACTTTTAACATCAAGAACG 12170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6103611239277830