Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21]
42,990 sequences; 724,284,658 total letters
Query= NC_021924.1
Length=129052
Score E
Sequences producing significant alignments: (Bits) Value
seq796 93.3 3e-14
seq545 93.3 3e-14
seq572 84.2 2e-11
>seq796
Length=44438
Score = 93.3 bits (102), Expect = 3e-14
Identities = 160/230 (70%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC-CTGA 110331
||||| |||||||||||||| | || || || ||||| ||| | || ||| || |
Sbjct 18605 ATGCAGATATTTGTCAAAACCCTCACTGGAAAGACCATCACCCTTGAGGTGGAAAGCTCA 18664
Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391
|| || | | | | || ||| ||||| ||||| |||||| | ||| || ||
Sbjct 18665 -GACACCATTGACAACGTTAAAGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGACCA 18723
Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451
|| || || || | |||||| || ||||| || |||| | | || | || ||||||||
Sbjct 18724 GCAGAGGCTGATCTTTGCGGGCAAGCAGCTTGAAGATGGCCGTACCCTCGCCGATTACAA 18783
Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501
|||||||||||| || || | ||| ||||| | | || || || ||||
Sbjct 18784 CATTCAAAAAGAGTCCACTCTTCACTTGGTGCTCCGTCTTCGTGGTGGAA 18833
Score = 93.3 bits (102), Expect = 3e-14
Identities = 158/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331
||||||||| ||||| || ||||| ||||| || ||||| ||| | || ||
Sbjct 19060 AATGCAAATTTTTGTGAAGACTTTGACCGGAAAGACCATCACCCTTGAGGTTGAAAGCTC 19119
Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391
||| ||| | | | | || ||| ||||| ||||| |||||| | ||| || ||
Sbjct 19120 CGACACTATTGACAATGTTAAAGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGACCA 19179
Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451
|| ||| | || | ||| || || ||||| ||||| | ||| || | || ||||||||
Sbjct 19180 GCAGAGATTGATCTTTGCCGGAAAGCAGCTTGAGGACGGCAGGACCCTTGCTGATTACAA 19239
Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501
||| || || ||||| || | ||| ||||| | | || || || ||||
Sbjct 19240 CATCCARAAGGAATCAACYCTTCACTTGGTGCTCCGTCTTCGTGGTGGAA 19289
>seq545
Length=31085
Score = 93.3 bits (102), Expect = 3e-14
Identities = 143/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 110266 ATTTAAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGA 110325
|||| | ||||| |||||||| || || | ||||| || ||||| || | || ||
Sbjct 1950 ATTTCAGATGCAGATATTTGTTAAGACACTCACCGGAAAGACCATCACTCTTGAGGTCGA 2009
Query 110326 GCCTGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGT 110385
| | || || | | | || ||| |||||| ||||| |||||| | ||
Sbjct 2010 GAGTTCTGACACCATTGATAATGTCAAAGCTAAGATTCAAGACAAGGAAGGCATTCCTCC 2069
Query 110386 GGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGA 110445
||||| || ||||| || | ||| || |||||||| || |||| | ||||| | || ||
Sbjct 2070 AGATCAGCAGAGACTGATCTTTGCTGGGAAACAGCTTGAAGATGGCCGAACACTTGCTGA 2129
Query 110446 TTACAACATTCAAAAAGAATCTAC 110469
||||||||| |||||||| |||||
Sbjct 2130 TTACAACATCCAAAAAGAGTCTAC 2153
Score = 86.0 bits (94), Expect = 5e-12
Identities = 140/199 (70%), Gaps = 2/199 (1%)
Strand=Plus/Plus
Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC-CTG 110330
||||||||| ||||| |||||| | ||||| || || || || | || ||| ||
Sbjct 2184 AATGCAAATCTTTGTTAAAACTCTGACCGGGAAGACTATAACTCTTGAGGTCGAGAGCTC 2243
Query 110331 ACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATC 110390
| || || ||| | || ||| || ||| ||||| ||||| | ||| || |
Sbjct 2244 A-GACACCATCGATAATGTCAAAGCTAAAATTCAAGACAAGGAAGGTATTCCCCCAGACC 2302
Query 110391 AACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACA 110450
| || || || || | ||| || |||||||| || |||| | ||||| | || |||||||
Sbjct 2303 AGCAGAGGCTGATCTTTGCTGGGAAACAGCTTGAAGATGGCCGAACACTTGCTGATTACA 2362
Query 110451 ACATTCAAAAAGAATCTAC 110469
|||| |||||||| |||||
Sbjct 2363 ACATCCAAAAAGAGTCTAC 2381
Score = 84.2 bits (92), Expect = 2e-11
Identities = 141/204 (69%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332
||||||||||||||||| || || || || || || ||||| | || ||| |
Sbjct 2869 ATGCAAATATTTGTCAAGACATTGACAGGGAAGACAATTACTTTGGAGGTTGAGAGTTCA 2928
Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392
||||| ||| | | || ||| ||||| ||||| || || | || || ||
Sbjct 2929 GATACCATCGACAATGTTAAAGCAAAGATCCAAGACAAGGAGGGTATTCCTCCAGACCAG 2988
Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452
|| ||| | || | ||| || || || || ||||||| || || |||| |||||||||
Sbjct 2989 CAGAGATTGATCTTTGCTGGAAAGCAACTTGAGGATGGAAGGACGTTGGCAGATTACAAC 3048
Query 110453 ATTCAAAAAGAATCTACGTTGCAC 110476
||||| |||||||| || |||||
Sbjct 3049 ATTCAGAAAGAATCAACCCTGCAC 3072
>seq572
Length=122185
Score = 84.2 bits (92), Expect = 2e-11
Identities = 81/104 (78%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 110366 GACAAAGAAGGCGTGCCCGTGGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAG 110425
|| ||||||||| | || ||||| || ||||| |||| ||| || |||||| ||||
Sbjct 88079 GATAAAGAAGGCATACCTCCTGATCAGCAGAGACTGATTTTTGCTGGAAAACAGTTGGAA 88020
Query 110426 GATGCCAGAACAATGGCGGATTACAACATTCAAAAAGAATCTAC 110469
|||| ||||| | || |||||||||||||| |||||||| ||
Sbjct 88019 GATGGGAGAACCCTCGCTGATTACAACATTCAGAAAGAATCAAC 87976
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 412625295514070
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |