Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21]
42,990 sequences; 724,284,658 total letters
Query= NC_022646.1
Length=101818
Score E
Sequences producing significant alignments: (Bits) Value
seq545 116 2e-21
seq3886 109 4e-19
seq796 107 1e-18
seq16835 104 2e-17
seq30006 96.9 2e-15
>seq545
Length=31085
Score = 116 bits (128), Expect = 2e-21
Identities = 165/232 (71%), Gaps = 10/232 (4%)
Strand=Plus/Minus
Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810
|| ||||||| | || || || || | ||| ||| |||||||| || ||||| |
Sbjct 2867 CCACCCCTCAGTCGAAGAACAAGATGTAAGGTAGACTCTTTCTGAATATTGTAGTCAGCC 2808
Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870
||| | | |||| || |||||||| ||||| |||||||||| ||||||||| | ||
Sbjct 2807 AGGGTCCTTCCATCCTCAAGTTGCTTGCCGGCAAAGATCAGTCTCTGCTGGTCTGGAGGA 2748
Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGG-----ATGCTATCGATTCATTGGCCT 34925
| ||| |||||||| | ||||| || ||| ||| ||||| | ||
Sbjct 2747 ATCCCTTCCTTGTCCTGAATTTTGGCCTTCACGTTGTCAATGGTATCGGAACTTT----- 2693
Query 34926 CGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
| || |||| ||| ||||||||||| || || ||||| ||||||||||||||
Sbjct 2692 CAACTTCAAGGGTGATGGTCTTTCCAGTAAGTGTCTTGACAAAGATCTGCAT 2641
Score = 105 bits (116), Expect = 4e-18
Identities = 153/216 (71%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 34762 CCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTC 34821
||||||||| || |||| || ||| ||||| ||||||||||| | ||| |||| |
Sbjct 3768 CCTCAGGACAAGATGAAGAGTAGACTCTTTCTGGATGTTATAGTCTGCAAGGGTGCGACC 3709
Query 34822 ATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTT 34881
||| || || ||||| || || ||||| || | || || ||| | || | ||| |||||
Sbjct 3708 ATCCTCAAGCTGCTTACCAGCAAAGATGAGCCTCTGTTGATCTGGTGGGATCCCTTCCTT 3649
Query 34882 GTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTAT 34941
||| | ||| ||| ||| || | || | ||| | ||| || || | || ||
Sbjct 3648 GTCCTGTATCTTTGCTTTCACATTGTCAATAGTATCAGAGCTCTCCACCTCCAATGTGAT 3589
Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
||||| || || || ||||| ||||||||||||||
Sbjct 3588 TGTCTTCCCAGTCAGAGTCTTCACAAAGATCTGCAT 3553
Score = 96.9 bits (106), Expect = 2e-15
Identities = 152/216 (70%), Gaps = 8/216 (4%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
||||| || |||| ||| ||| || || ||||| || || | || | || ||||
Sbjct 2168 AGGACAAGRTGAAGGGTAGACTCTTTTTGGATGTTGTAATCAGCAAGTGTTCGGCCATCT 2109
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|| || || || || || |||||||||| ||||| ||| | || | || ||||||||
Sbjct 2108 TCAAGCTGTTTCCCAGCAAAGATCAGTCTCTGCTGATCTGGAGGAATGCCTTCCTTGTCT 2049
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941
| || || |||||| || |||| || ||| |||||| |||| || ||
Sbjct 2048 TGAATCTTAGCTTTGAC--AT--TATCAATGGTGTCAGAACTCTCGACCTCAAGAGTGAT 1993
Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
||||||||| ||||| ||||| ||||| ||||||||
Sbjct 1992 GGTCTTTCCGGTGAGTGTCTTAACAAATATCTGCAT 1957
>seq3886
Length=20373
Score = 109 bits (120), Expect = 4e-19
Identities = 155/216 (72%), Gaps = 8/216 (4%)
Strand=Plus/Plus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
||||| ||||| | ||| ||||||||| || || ||||| | ||| |||| ||||
Sbjct 12786 AGGACAAGGTGCAGGGTAGACTCCTTCTGGATATTGTAGTCAGCAAGGGTGCGGCCATCC 12845
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|| || ||||| || |||||||||| | ||||||||| | || | ||||||||||||
Sbjct 12846 TCAAGCTGCTTACCAGCGAAGATCAACCTCTGCTGGTCTGGTGGGATCCCCTCCTTGTCC 12905
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941
| || || ||| || || | ||||| ||| ||| || || | || ||
Sbjct 12906 TGAATCTTAGCTTTCAC--AT--TGTCGATGGTGTCAGAACTCTCCACCTCCAAAGTGAT 12961
Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|||||| || || | |||||| ||||||||||||||
Sbjct 12962 GGTCTTCCCGGTCAAGGTCTTCACAAAGATCTGCAT 12997
Score = 109 bits (120), Expect = 4e-19
Identities = 155/216 (72%), Gaps = 8/216 (4%)
Strand=Plus/Plus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
||||| ||||||| ||| ||||||||| ||||| ||||| | ||| |||| | ||
Sbjct 13242 AGGACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGGCCGTCC 13301
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|| || ||||| || |||||||||| | ||||||||| | || | |||||||||||
Sbjct 13302 TCGAGCTGCTTACCAGCGAAGATCAACCTCTGCTGGTCTGGGGGAATTCCCTCCTTGTCC 13361
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941
| || || || || || |||| || || | || || || | || ||
Sbjct 13362 TGGATCTTAGCCTTAAC--AT--TATCAATGGTGTCGGAGCTTTCCACCTCCAAAGTGAT 13417
Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
||||||||| ||||||||||| ||||| ||||||||
Sbjct 13418 GGTCTTTCCGGTGAGGGTCTTCACAAAAATCTGCAT 13453
Score = 107 bits (118), Expect = 1e-18
Identities = 161/229 (70%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808
|||||||||||| ||| || |||| ||| | ||| |||||| || ||||| |||||||
Sbjct 12997 TTCCTCCCCTCAGCCTAAGCACCAAGTGCAGGGTCGACTCCTTTTGGATGTTGTAGTCCG 13056
Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868
| |||| |||| || || ||||| || || || |||| | ||||||||| | |
Sbjct 13057 CCAAAGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCTGGGG 13116
Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGA 34928
| | ||||||||||| | || || ||||| | || | || | ||| |
Sbjct 13117 GAATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCAATGGTGTCGGAGCTCTCAA 13176
Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
| || | ||| ||||| || || || |||||||| |||||||| |||||
Sbjct 13177 CCTCCAGGGTGATGGTTTTCCCGGTAAGGGTCTTAACAAAGATTTGCAT 13225
Score = 107 bits (118), Expect = 1e-18
Identities = 151/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
|| |||| || | |||| ||||||||| ||||| ||||| | |||| |||| ||||
Sbjct 13698 AGCACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCTAGGGTGCGGCCATCT 13757
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|||| |||||||| || ||||||| | ||||||||| | || | || ||||| ||
Sbjct 13758 TCCAACTGCTTTCCTGCAAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTATCC 13817
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945
| || || |||||| | || | || | ||||| |||| ||| || |||
Sbjct 13818 TGGATCTTAGCCTTGACGTTGTCAATGGTGTCTGAGCTTTCGACCTCAAGGGTAATCGTC 13877
Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|| ||||| || ||||| || |||||||||||
Sbjct 13878 TTACCCGTAAGAGTCTTCACGAAGATCTGCAT 13909
>seq796
Length=44438
Score = 107 bits (118), Expect = 1e-18
Identities = 151/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
||||||| ||||| ||| ||||||||| |||||||| || | ||| | || | ||
Sbjct 19500 AGGACCAAGTGAAGGGTTGACTCCTTCTGGATGTTATAATCAGCAAGGGTCCGGCCGTCC 19441
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|| || ||||||||||| ||||||| || ||||||||| | || | || ||||||||
Sbjct 19440 TCAAGCTGCTTTCCGGCAAAGATCAATCTCTGCTGGTCTGGTGGAATGCCTTCCTTGTCC 19381
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945
| || || ||| || | || | || | || || |||| ||| ||||||
Sbjct 19380 TGGATCTTGGCTTTAACATTGTCAATAGTGTCGGAGCTTTCAACCTCAAGGGTGATGGTC 19321
Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
||||| || | |||||| ||||| || |||||
Sbjct 19320 TTTCCGGTCAAGGTCTTCACAAAAATTTGCAT 19289
Score = 104 bits (114), Expect = 2e-17
Identities = 150/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
|| |||| ||||| ||| ||| || |||||||| || || | ||| | || ||||
Sbjct 18816 AGCACCAAGTGAAGAGTGGACTCTTTTTGAATGTTGTAATCGGCGAGGGTACGGCCATCT 18757
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|| || ||||| || || |||||||| | ||||||||| | || | || ||||||||
Sbjct 18756 TCAAGCTGCTTGCCCGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCC 18697
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945
| || || ||| ||| | || | || | || || |||| ||| ||||||
Sbjct 18696 TGGATCTTGGCTTTAACGTTGTCAATGGTGTCTGAGCTTTCCACCTCAAGGGTGATGGTC 18637
Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
||||| |||||||| || ||||| ||||||||
Sbjct 18636 TTTCCAGTGAGGGTTTTGACAAATATCTGCAT 18605
>seq16835
Length=8075
Score = 104 bits (114), Expect = 2e-17
Identities = 142/196 (72%), Gaps = 8/196 (4%)
Strand=Plus/Plus
Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845
||||||||| ||||| ||||| | || | || |||| || || ||||||||||||||
Sbjct 6910 CTCCTTCTGGATGTTGTAGTCGGCAAGAGTACGACCATCCTCAAGCTGCTTTCCGGCGAA 6969
Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905
|||| || ||||||||| | || | ||| |||||||| | || || |||||| |
Sbjct 6970 AATCAAACGCTGCTGGTCTGGGGGAATCCCTTCCTTGTCCTGGATCTTGGCTTTGAC--A 7027
Query 34906 TGCTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCT 34961
| | ||||| || | ||| || || | ||| || ||||| ||||| ||||| |
Sbjct 7028 T--TGTCGATGGTGTCGGAAGACTCAACCTCTAGGGTGATCGTCTTCCCCGTTAGGGTTT 7085
Query 34962 TTACAAAGATCTGCAT 34977
| || |||||||||||
Sbjct 7086 TCACGAAGATCTGCAT 7101
>seq30006
Length=21699
Score = 96.9 bits (106), Expect = 2e-15
Identities = 134/188 (71%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 34790 TTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATC 34849
||||||||||| || || | ||| | || |||| || || ||||||||||||||||||
Sbjct 12891 TTCTGAATGTTGTAATCAGCTAGAGTACGTCCATCTTCGAGCTGCTTTCCGGCGAAGATC 12832
Query 34850 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT 34909
| ||| |||||||| | || | || |||||||| | || || |||||| |
Sbjct 12831 AATCGCTGCTGGTCCGGTGGAATACCTTCCTTGTCTTGAATCTTAGCTTTGACATTGTCA 12772
Query 34910 ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAG 34969
|| | || | | || || |||| || || ||||| ||||| || || || || |||
Sbjct 12771 ATAGTGTCGCTTGATTCAACTTCAAGCGTGATCGTCTTCCCCGTAAGAGTTTTCACGAAG 12712
Query 34970 ATCTGCAT 34977
||||||||
Sbjct 12711 ATCTGCAT 12704
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 325522156310810
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