Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21]
42,990 sequences; 724,284,658 total letters
Query= NC_023177.1
Length=124688
Score E
Sequences producing significant alignments: (Bits) Value
seq796 98.7 8e-16
seq545 91.5 1e-13
seq3886 87.8 1e-12
>seq796
Length=44438
Score = 98.7 bits (108), Expect = 8e-16
Identities = 144/204 (71%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615
||||| |||||||| || || || || || |||||||| || | || |||| |
Sbjct 19973 ATGCAGATTTTTGTGAAGACCTTGACTGGGAAAACCATAACTTTGGAGGTGGAGAGTTCT 20032
Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675
||||| | | | | || || |||||| || || || || | || ||| |||
Sbjct 20033 GATACCATTGACAATGTGAAGGCTAAGATTCAGGACAAGGAGGGAATCCCACCGGACCAG 20092
Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735
|||||||| || | ||| || || ||||| || || | | || ||||||||||||||
Sbjct 20093 CAGAGACTGATCTTTGCAGGGAAGCAGCTTGAAGATGGAAGGACTCTGGCGGACTACAAC 20152
Query 107736 ATTCAAAAGGAGTCTACGTTGCAC 107759
|| |||||||||||||| ||||||
Sbjct 20153 ATCCAAAAGGAGTCTACTTTGCAC 20176
Score = 93.3 bits (102), Expect = 3e-14
Identities = 149/212 (70%), Gaps = 2/212 (1%)
Strand=Plus/Plus
Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGA-AACGGAGGCTG 107613
||||||||||||||| || ||||| || || || ||||| ||| | || | | |||
Sbjct 19060 AATGCAAATTTTTGTGAAGACTTTGACCGGAAAGACCATCACCCTTGAGGTTGAAAGCT- 19118
Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673
||| ||| | | | | || ||| ||||| || || |||||| | ||| || |
Sbjct 19119 CCGACACTATTGACAATGTTAAAGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGACC 19178
Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733
|||||||| | || | ||| || || ||||| ||||||| || || | || || ||||
Sbjct 19179 AGCAGAGATTGATCTTTGCCGGAAAGCAGCTTGAGGACGGCAGGACCCTTGCTGATTACA 19238
Query 107734 ACATTCAAAAGGAGTCTACGTTGCACATGGTG 107765
|||| || ||||| || || | ||| |||||
Sbjct 19239 ACATCCARAAGGAATCAACYCTTCACTTGGTG 19270
>seq545
Length=31085
Score = 91.5 bits (100), Expect = 1e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615
||||||||||||||||| ||||| || || || || ||||| | || ||| |
Sbjct 3097 ATGCAAATTTTTGTCAAGACTTTGACTGGGAAGACAATTACATTGGAGGTTGAGAGTTCA 3156
Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675
||||| | | | | || ||| ||||||| || || || || | ||| || ||
Sbjct 3157 GATACCATTGACAATGTGAAAGCAAAGATTCAAGACAAGGAGGGTATTCCCCCAGACCAA 3216
Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735
||| | | || | ||| |||||||| || ||||| | | || | || |||||||||
Sbjct 3217 CAGCGTTTGATCTTTGCTGGTAAACAACTTGAGGAYGGGAGGACTCTTGCAGACTACAAC 3276
Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782
|| || |||||||| || | || |||||||| | ||| |||| ||
Sbjct 3277 ATCCAGAAGGAGTCAACTCTCCATCTGGTGTTGCGTTTGAGAGGAGG 3323
>seq3886
Length=20373
Score = 87.8 bits (96), Expect = 1e-12
Identities = 159/230 (69%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614
|||||||| ||||| || || | || || |||||||| ||| | || ||| |||
Sbjct 13225 ATGCAAATCTTTGTTAAGACCCTTACCGGGAAAACCATCACCCTGGAGGTTGAGAGCTC- 13167
Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674
||| || | | | | || || ||||| || || || || | ||| || ||
Sbjct 13166 CGACACCATTGACAATGTCAAGGCCAAGATCCAAGACAAGGAGGGTATTCCCCCAGACCA 13107
Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734
|||||| | |||| ||| || || ||||| ||||| | | || |||||||||||||
Sbjct 13106 GCAGAGGTTGATTTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACTTTGGCGGACTACAA 13047
Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAA 107784
||| ||||||||||| || ||||| ||||| | || || | || ||||
Sbjct 13046 CATCCAAAAGGAGTCGACCCTGCACTTGGTGCTTAGGCTGAGGGGAGGAA 12997
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 398667812240110
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |