Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21] 42,990 sequences; 724,284,658 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq796 98.7 8e-16 seq545 91.5 1e-13 seq3886 87.8 1e-12 >seq796 Length=44438 Score = 98.7 bits (108), Expect = 8e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| |||||||| || || || || || |||||||| || | || |||| | Sbjct 19973 ATGCAGATTTTTGTGAAGACCTTGACTGGGAAAACCATAACTTTGGAGGTGGAGAGTTCT 20032 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| | | | | || || |||||| || || || || | || ||| ||| Sbjct 20033 GATACCATTGACAATGTGAAGGCTAAGATTCAGGACAAGGAGGGAATCCCACCGGACCAG 20092 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 |||||||| || | ||| || || ||||| || || | | || |||||||||||||| Sbjct 20093 CAGAGACTGATCTTTGCAGGGAAGCAGCTTGAAGATGGAAGGACTCTGGCGGACTACAAC 20152 Query 107736 ATTCAAAAGGAGTCTACGTTGCAC 107759 || |||||||||||||| |||||| Sbjct 20153 ATCCAAAAGGAGTCTACTTTGCAC 20176 Score = 93.3 bits (102), Expect = 3e-14 Identities = 149/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGA-AACGGAGGCTG 107613 ||||||||||||||| || ||||| || || || ||||| ||| | || | | ||| Sbjct 19060 AATGCAAATTTTTGTGAAGACTTTGACCGGAAAGACCATCACCCTTGAGGTTGAAAGCT- 19118 Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 ||| ||| | | | | || ||| ||||| || || |||||| | ||| || | Sbjct 19119 CCGACACTATTGACAATGTTAAAGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGACC 19178 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 |||||||| | || | ||| || || ||||| ||||||| || || | || || |||| Sbjct 19179 AGCAGAGATTGATCTTTGCCGGAAAGCAGCTTGAGGACGGCAGGACCCTTGCTGATTACA 19238 Query 107734 ACATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 |||| || ||||| || || | ||| ||||| Sbjct 19239 ACATCCARAAGGAATCAACYCTTCACTTGGTG 19270 >seq545 Length=31085 Score = 91.5 bits (100), Expect = 1e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||||||||||||||| ||||| || || || || ||||| | || ||| | Sbjct 3097 ATGCAAATTTTTGTCAAGACTTTGACTGGGAAGACAATTACATTGGAGGTTGAGAGTTCA 3156 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| | | | | || ||| ||||||| || || || || | ||| || || Sbjct 3157 GATACCATTGACAATGTGAAAGCAAAGATTCAAGACAAGGAGGGTATTCCCCCAGACCAA 3216 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | | || | ||| |||||||| || ||||| | | || | || ||||||||| Sbjct 3217 CAGCGTTTGATCTTTGCTGGTAAACAACTTGAGGAYGGGAGGACTCTTGCAGACTACAAC 3276 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 || || |||||||| || | || |||||||| | ||| |||| || Sbjct 3277 ATCCAGAAGGAGTCAACTCTCCATCTGGTGTTGCGTTTGAGAGGAGG 3323 >seq3886 Length=20373 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 |||||||| ||||| || || | || || |||||||| ||| | || ||| ||| Sbjct 13225 ATGCAAATCTTTGTTAAGACCCTTACCGGGAAAACCATCACCCTGGAGGTTGAGAGCTC- 13167 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || | | | | || || ||||| || || || || | ||| || || Sbjct 13166 CGACACCATTGACAATGTCAAGGCCAAGATCCAAGACAAGGAGGGTATTCCCCCAGACCA 13107 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| | |||| ||| || || ||||| ||||| | | || ||||||||||||| Sbjct 13106 GCAGAGGTTGATTTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACTTTGGCGGACTACAA 13047 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAA 107784 ||| ||||||||||| || ||||| ||||| | || || | || |||| Sbjct 13046 CATCCAAAAGGAGTCGACCCTGCACTTGGTGCTTAGGCTGAGGGGAGGAA 12997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398667812240110