Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21] 42,990 sequences; 724,284,658 total letters Query= NC_023549.1 Length=56789 Score E Sequences producing significant alignments: (Bits) Value seq25658 89.7 2e-13 seq2458 82.4 3e-11 >seq25658 Length=33842 Score = 89.7 bits (98), Expect = 2e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||||| ||||||||||||||| | |||| ||| ||||||||| ||||||||| || Sbjct 17613 GTTGCGGAGACGGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTTCGAGCTACCAAA 17672 Query 50170 CTGCTCTACTCC 50181 ||||||||| || Sbjct 17673 CTGCTCTACCCC 17684 >seq2458 Length=63974 Score = 82.4 bits (90), Expect = 3e-11 Identities = 62/74 (84%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||| ||| | ||||||||||||| | |||| ||| ||||||||| | |||||||| || Sbjct 59789 GTTGCAGAGACAGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGTGAGCTACCAAA 59848 Query 50170 CTGCTCTACTCCGC 50183 ||||||||| || | Sbjct 59849 CTGCTCTACCCCSC 59862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 181510490431380