Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21] 42,990 sequences; 724,284,658 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq3886 114 1e-20 seq796 114 1e-20 seq16835 111 2e-19 seq558 109 5e-19 seq545 93.3 4e-14 seq30006 89.7 5e-13 >seq3886 Length=20373 Score = 114 bits (126), Expect = 1e-20 Identities = 151/207 (73%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||| ||||| || || || ||||| || ||| ||| | | | |||||||| Sbjct 13020 AAGTGCAGGGTCGACTCCTTTTGGATGTTGTAGTCCGCCAAAGTGCGGCCA-TCCTCGAG 13078 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||||||| || |||| | || ||||||||| || || || || |||||||| ||| Sbjct 13079 CTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCTGGGGGAATACCCTCCTTGTCTTGGAT 13138 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||||| | |||| ||||||| | ||| || || | ||||| |||||| || Sbjct 13139 CTTGGCCTTGACATTGTCAATGGTGTCGGAGCTCTCAACCTCCAGGGTGATGGTTTTCCC 13198 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||| || || || || || || ||||| Sbjct 13199 GGTAAGGGTCTTAACAAAGATTTGCAT 13225 Score = 114 bits (126), Expect = 1e-20 Identities = 150/205 (73%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||| ||||| ||||| || ||||| || | | ||| | | | |||||||||| Sbjct 13478 ATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCTAAGGTGCGGCCA-TCCTCGAGCT 13536 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 |||| || ||| | || | || ||||||||| || ||||| |||||||| || ||||| Sbjct 13537 GCTTCCCAGCGAAGATCAACCTCTGCTGGTCTGGGGGGATCCCTTCCTTATCCTGGATCT 13596 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||| | | |||| ||||||| | ||||| || | |||| ||| || |||| Sbjct 13597 TAGCCTTCACGTTGTCAATGGTGTCGGAGCTTTCCACCTCCAAAGTGATGGTCTTTCCGG 13656 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 | ||||| || ||||| |||||||| Sbjct 13657 TAAGAGTCTTAACGAAGATCTGCAT 13681 Score = 109 bits (120), Expect = 5e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||| ||||| ||||| || ||||| ||| | | ||| ||||||||||||||| || Sbjct 13256 GGTCGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGGCCGTCCTCGAGCTGCTTACC 13315 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || | || ||||||||| || || || || |||||||| |||||| ||| Sbjct 13316 AGCGAAGATCAACCTCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGGATCTTAGCCTT 13375 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | |||| ||||||| | ||||| || | |||| ||| || ||||| || || Sbjct 13376 AACATTATCAATGGTGTCGGAGCTTTCCACCTCCAAAGTGATGGTCTTTCCGGTGAGGGT 13435 Query 133643 TTTTACGAAAATCTGCAT 133660 || || ||||||||||| Sbjct 13436 CTTCACAAAAATCTGCAT 13453 Score = 93.3 bits (102), Expect = 4e-14 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 ||||| | ||||||||| ||||| || || ||||| | | || |||||| | | Sbjct 13932 AAATGGAGGGTGGACTCCTTCTGGATGTTATAATCAGCTAGAGTCCGTCCGTCCTCCAAC 13991 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 ||||| || ||| | || |||| ||||| || || || || ||||||||||| |||| Sbjct 13992 TGCTTTCCGGCGAAGATAAGCCTTTGCTGATCAGGGGGAATCCCTTCCTTGTCCTGGATC 14051 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||| | | || | || || | ||||| || | ||||| || || ||| Sbjct 14052 TTAGCCTTAACGTTGTCGATTGTATCAGAACTTTCCACCTCTAGGGTGATAGTCTTTCCG 14111 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 || |||||||| ||||| |||||||| Sbjct 14112 GTGAGAGTTTTCACGAAGATCTGCAT 14137 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | ||||||||| ||||| || ||||| || | | ||| | | | || || | Sbjct 13704 AAATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCTAGGGTGCGGCCA-TCTTCCAA 13762 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||| || || | || | || ||||||||| || || ||||||||||| || ||| Sbjct 13763 CTGCTTTCCTGCAAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTATCCTGGAT 13822 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||||| | |||| ||||| | | || || || | ||| | || || || Sbjct 13823 CTTAGCCTTGACGTTGTCAATGGTGTCTGAGCTTTCGACCTCAAGGGTAATCGTCTTACC 13882 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 || ||||| || ||||| |||||||| Sbjct 13883 CGTAAGAGTCTTCACGAAGATCTGCAT 13909 >seq796 Length=44438 Score = 114 bits (126), Expect = 1e-20 Identities = 148/199 (74%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 ||||||||||| || || ||||||||| | | || | | | || || ||||||||||| Sbjct 18801 GTGGACTCTTTTTGAATGTTGTAATCGGCGAGGGTACGGCCA-TCTTCAAGCTGCTTGCC 18743 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || |||| ||||||||| || || |||||||||||||| |||| || |||| Sbjct 18742 CGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATC-TTGGCTT 18684 Query 133583 GAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | |||| ||||| | | ||||| || | ||||| ||| || || || || | Sbjct 18683 TAACGTTGTCAATGGTGTCTGAGCTTTCCACCTCAAGGGTGATGGTCTTTCCAGTGAGGG 18624 Query 133642 TTTTTACGAAAATCTGCAT 133660 |||| || || |||||||| Sbjct 18623 TTTTGACAAATATCTGCAT 18605 Score = 102 bits (112), Expect = 8e-17 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 || || | ||| || || ||||| || |||||||| | | || |||||| ||| Sbjct 19038 AAGTGAAGGGTTGATTCCTTCTGGATGTTGTAATCAGCAAGGGTCCTGCCGTCCTCAAGC 18979 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 ||||| ||||| | || | | ||||||||| || || |||||||||||||| |||| Sbjct 18978 TGCTTTCCCGCAAAGATCAATCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATC 18919 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||| | | |||| ||||| | | || || || | ||||| ||| || || Sbjct 18918 TTAGCCTTAACATTGTCAATGGTGTCAGAGCTTTCAACCTCAAGGGTGATGGTCTTTCCT 18859 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 |||| |||||| |||||||| ||||| Sbjct 18858 GTCAAAGTTTTCACGAAAATTTGCAT 18833 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/209 (71%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGT--GGACGAGTCCTCGA 133512 || || | ||| ||||| ||||| || || ||||| | | || || || ||||| | Sbjct 19494 AAGTGAAGGGTTGACTCCTTCTGGATGTTATAATCAGCAAGGGTCCGGCCG--TCCTCAA 19437 Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572 ||||||| || || | || | | ||||||||| || || |||||||||||||| || Sbjct 19436 GCTGCTTTCCGGCAAAGATCAATCTCTGCTGGTCTGGTGGAATGCCTTCCTTGTCCTGGA 19377 Query 133573 TCTTTTGCTTGAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTG 133631 || || |||| | | | |||| ||||||| | || || || | ||||| ||| || Sbjct 19376 TC-TTGGCTTTAACATTGTCAATAGTGTCGGAGCTTTCAACCTCAAGGGTGATGGTCTTT 19318 Query 133632 CCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||||| || || || ||||| ||||| Sbjct 19317 CCGGTCAAGGTCTTCACAAAAATTTGCAT 19289 Score = 91.5 bits (100), Expect = 1e-13 Identities = 116/157 (74%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 |||||| |||||||| || || | || | | ||||||||| || || ||||||||||| Sbjct 19216 GTCCTCAAGCTGCTTTCCGGCAAAGATCAATCTCTGCTGGTCTGGGGGAATGCCTTCCTT 19157 Query 133565 GTCGGTGATCTTTTGCTTGAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGA 133623 ||| |||| || |||| | | | |||| ||||||| | || || || | ||||| Sbjct 19156 GTCCTGGATC-TTGGCTTTAACATTGTCAATAGTGTCGGAGCTTTCAACCTCAAGGGTGA 19098 Query 133624 CGGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||| || ||||||| ||| || || ||||| ||||| Sbjct 19097 TGGTCTTTCCGGTCAAAGTCTTCACAAAAATTTGCAT 19061 >seq16835 Length=8075 Score = 111 bits (122), Expect = 2e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||| ||||| || ||||| ||| | | || ||| | ||||| |||||||| || Sbjct 6905 GTGGACTCCTTCTGGATGTTGTAGTCGGCAAGAGTACGACCA-TCCTCAAGCTGCTTTCC 6963 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| |||| | ||||||||||| || || || ||||||||||| |||||| || Sbjct 6964 GGCGAAAATCAAACGCTGCTGGTCTGGGGGAATCCCTTCCTTGTCCTGGATCTTGGCTTT 7023 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || | ||||||| | ||| || || | ||||| || || || || || || Sbjct 7024 GACATTGTCGATGGTGTCGGAAGACTCAACCTCTAGGGTGATCGTCTTCCCCGTTAGGGT 7083 Query 133643 TTTTACGAAAATCTGCAT 133660 ||| ||||| |||||||| Sbjct 7084 TTTCACGAAGATCTGCAT 7101 >seq558 Length=67963 Score = 109 bits (120), Expect = 5e-19 Identities = 145/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || ||||| || | | ||| | | | |||||||||||||| | Sbjct 17121 GGTGGACTCCTTCTGGATGTTGTAGTCAGCTAGCGTTCGGCCA-TCCTCGAGCTGCTTAC 17179 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| |||| | ||||||||||| || || |||||||||||||| ||||| || Sbjct 17180 CGGCGAAAATCAATCGCTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGAATCTTAGCCT 17239 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | |||| ||||| | | ||| || || | ||| | || ||||| ||||| | Sbjct 17240 TAACATTGTCAATGGTGTCTGATGACTCTACCTCTAAGGTAATAGTCTTGCCCGTCAGGG 17299 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || || || |||||||| Sbjct 17300 TCTTCACAAAGATCTGCAT 17318 Score = 95.1 bits (104), Expect = 1e-14 Identities = 142/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 |||||| || ||||| || ||||| || | | ||| | | | ||||| |||||||| | Sbjct 63831 GGTGGATTCCTTCTGGATGTTGTAGTCAGCTAGCGTTCGGCCA-TCCTCAAGCTGCTTTC 63773 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || |||| | || ||||||||| || ||||||||||||||||| ||||| || Sbjct 63772 CTGCAAAAATCAACCTCTGCTGGTCTGGTGGGATGCCTTCCTTGTCCTGAATCTTAGCCT 63713 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | |||| ||||| | | ||| || || | ||| | || ||||| || || | Sbjct 63712 TAACATTGTCAATGGTGTCTGATGACTCTACCTCTAAGGTAATAGTCTTGCCCGTTAGGG 63653 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || || || |||||||| Sbjct 63652 TCTTCACAAAGATCTGCAT 63634 >seq545 Length=31085 Score = 93.3 bits (102), Expect = 4e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTG 133516 ||||| ||| ||||||||||| |||||||| || ||| || ||||| || || Sbjct 2844 ATGTAAGGTAGACTCTTTCTGAATATTGTAGTCAGCCAGGGTCCTTCCATCCTCAAGTTG 2785 Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 |||||| || | || || | ||||||||| ||||| || ||||||||||| ||| || Sbjct 2784 CTTGCCGGCAAAGATCAGTCTCTGCTGGTCTGGAGGAATCCCTTCCTTGTC-CTGAATTT 2726 Query 133577 TTG-CTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | | ||| | | |||| || |||| || || || | ||||| ||| || || | Sbjct 2725 TGGCCTTCACGTTGTCAATGGTATCGGAACTTTCAACTTCAAGGGTGATGGTCTTTCCAG 2666 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 | || || || || || |||||||| Sbjct 2665 TAAGTGTCTTGACAAAGATCTGCAT 2641 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||||||||| || || || || | | ||| ||| | ||||| |||||||| || Sbjct 3749 GTAGACTCTTTCTGGATGTTATAGTCTGCAAGGGTGCGACCA-TCCTCAAGCTGCTTACC 3691 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | ||||||| ||| || || || ||||| ||||||||||| |||||| || Sbjct 3690 AGCAAAGATGAGCCTCTGTTGATCTGGTGGGATCCCTTCCTTGTCCTGTATCTTTGCTTT 3631 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | |||| || || | | |||||| || | |||| || || || |||||||| Sbjct 3630 CACATTGTCAATAGTATCAGAGCTCTCCACCTCCAATGTGATTGTCTTCCCAGTCAGAGT 3571 Query 133643 TTTTACGAAAATCTGCAT 133660 || || || |||||||| Sbjct 3570 CTTCACAAAGATCTGCAT 3553 >seq30006 Length=21699 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/191 (71%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 133471 CTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCCCGCGTAA 133529 ||||||| || |||||||| | | || | | | || ||||||||||| || ||| | Sbjct 12893 CTTTCTGAATGTTGTAATCAGCTAGAGTACGTCCA-TCTTCGAGCTGCTTTCCGGCGAAG 12835 Query 133530 ATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGC 133589 || | ||||||||||| || || || ||||||||||| ||||| |||| | Sbjct 12834 ATCAATCGCTGCTGGTCCGGTGGAATACCTTCCTTGTCTTGAATCTTAGCTTTGACATTG 12775 Query 133590 TCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACG 133649 |||| |||||| | | || || || | |||| || || || || |||||||| ||| Sbjct 12774 TCAATAGTGTCGCTTGATTCAACTTCAAGCGTGATCGTCTTCCCCGTAAGAGTTTTCACG 12715 Query 133650 AAAATCTGCAT 133660 || |||||||| Sbjct 12714 AAGATCTGCAT 12704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483161021747600