Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21]
42,990 sequences; 724,284,658 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq3886 114 1e-20
seq796 114 1e-20
seq16835 111 2e-19
seq558 109 5e-19
seq545 93.3 4e-14
seq30006 89.7 5e-13
>seq3886
Length=20373
Score = 114 bits (126), Expect = 1e-20
Identities = 151/207 (73%), Gaps = 2/207 (1%)
Strand=Plus/Plus
Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513
|| || | ||| ||||| || || || ||||| || ||| ||| | | | ||||||||
Sbjct 13020 AAGTGCAGGGTCGACTCCTTTTGGATGTTGTAGTCCGCCAAAGTGCGGCCA-TCCTCGAG 13078
Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573
||||||||| || |||| | || ||||||||| || || || || |||||||| |||
Sbjct 13079 CTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCTGGGGGAATACCCTCCTTGTCTTGGAT 13138
Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633
||| ||||| | |||| ||||||| | ||| || || | ||||| |||||| ||
Sbjct 13139 CTTGGCCTTGACATTGTCAATGGTGTCGGAGCTCTCAACCTCCAGGGTGATGGTTTTCCC 13198
Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660
||| || || || || || || |||||
Sbjct 13199 GGTAAGGGTCTTAACAAAGATTTGCAT 13225
Score = 114 bits (126), Expect = 1e-20
Identities = 150/205 (73%), Gaps = 2/205 (1%)
Strand=Plus/Plus
Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515
||| | ||| ||||| ||||| || ||||| || | | ||| | | | ||||||||||
Sbjct 13478 ATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCTAAGGTGCGGCCA-TCCTCGAGCT 13536
Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575
|||| || ||| | || | || ||||||||| || ||||| |||||||| || |||||
Sbjct 13537 GCTTCCCAGCGAAGATCAACCTCTGCTGGTCTGGGGGGATCCCTTCCTTATCCTGGATCT 13596
Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635
| ||| | | |||| ||||||| | ||||| || | |||| ||| || ||||
Sbjct 13597 TAGCCTTCACGTTGTCAATGGTGTCGGAGCTTTCCACCTCCAAAGTGATGGTCTTTCCGG 13656
Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660
| ||||| || ||||| ||||||||
Sbjct 13657 TAAGAGTCTTAACGAAGATCTGCAT 13681
Score = 109 bits (120), Expect = 5e-19
Identities = 143/198 (72%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522
||| ||||| ||||| || ||||| ||| | | ||| ||||||||||||||| ||
Sbjct 13256 GGTCGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGGCCGTCCTCGAGCTGCTTACC 13315
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
||| | || | || ||||||||| || || || || |||||||| |||||| |||
Sbjct 13316 AGCGAAGATCAACCTCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGGATCTTAGCCTT 13375
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642
| | |||| ||||||| | ||||| || | |||| ||| || ||||| || ||
Sbjct 13376 AACATTATCAATGGTGTCGGAGCTTTCCACCTCCAAAGTGATGGTCTTTCCGGTGAGGGT 13435
Query 133643 TTTTACGAAAATCTGCAT 133660
|| || |||||||||||
Sbjct 13436 CTTCACAAAAATCTGCAT 13453
Score = 93.3 bits (102), Expect = 4e-14
Identities = 144/206 (70%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514
||||| | ||||||||| ||||| || || ||||| | | || |||||| | |
Sbjct 13932 AAATGGAGGGTGGACTCCTTCTGGATGTTATAATCAGCTAGAGTCCGTCCGTCCTCCAAC 13991
Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574
||||| || ||| | || |||| ||||| || || || || ||||||||||| ||||
Sbjct 13992 TGCTTTCCGGCGAAGATAAGCCTTTGCTGATCAGGGGGAATCCCTTCCTTGTCCTGGATC 14051
Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634
|| ||| | | || | || || | ||||| || | ||||| || || |||
Sbjct 14052 TTAGCCTTAACGTTGTCGATTGTATCAGAACTTTCCACCTCTAGGGTGATAGTCTTTCCG 14111
Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660
|| |||||||| ||||| ||||||||
Sbjct 14112 GTGAGAGTTTTCACGAAGATCTGCAT 14137
Score = 91.5 bits (100), Expect = 1e-13
Identities = 146/207 (71%), Gaps = 2/207 (1%)
Strand=Plus/Plus
Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513
||||| | ||||||||| ||||| || ||||| || | | ||| | | | || || |
Sbjct 13704 AAATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCTAGGGTGCGGCCA-TCTTCCAA 13762
Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573
|||||| || || | || | || ||||||||| || || ||||||||||| || |||
Sbjct 13763 CTGCTTTCCTGCAAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTATCCTGGAT 13822
Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633
||| ||||| | |||| ||||| | | || || || | ||| | || || ||
Sbjct 13823 CTTAGCCTTGACGTTGTCAATGGTGTCTGAGCTTTCGACCTCAAGGGTAATCGTCTTACC 13882
Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660
|| ||||| || ||||| ||||||||
Sbjct 13883 CGTAAGAGTCTTCACGAAGATCTGCAT 13909
>seq796
Length=44438
Score = 114 bits (126), Expect = 1e-20
Identities = 148/199 (74%), Gaps = 4/199 (2%)
Strand=Plus/Minus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522
||||||||||| || || ||||||||| | | || | | | || || |||||||||||
Sbjct 18801 GTGGACTCTTTTTGAATGTTGTAATCGGCGAGGGTACGGCCA-TCTTCAAGCTGCTTGCC 18743
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
||| | || |||| ||||||||| || || |||||||||||||| |||| || ||||
Sbjct 18742 CGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATC-TTGGCTT 18684
Query 133583 GAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641
| | | |||| ||||| | | ||||| || | ||||| ||| || || || || |
Sbjct 18683 TAACGTTGTCAATGGTGTCTGAGCTTTCCACCTCAAGGGTGATGGTCTTTCCAGTGAGGG 18624
Query 133642 TTTTTACGAAAATCTGCAT 133660
|||| || || ||||||||
Sbjct 18623 TTTTGACAAATATCTGCAT 18605
Score = 102 bits (112), Expect = 8e-17
Identities = 146/206 (71%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514
|| || | ||| || || ||||| || |||||||| | | || |||||| |||
Sbjct 19038 AAGTGAAGGGTTGATTCCTTCTGGATGTTGTAATCAGCAAGGGTCCTGCCGTCCTCAAGC 18979
Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574
||||| ||||| | || | | ||||||||| || || |||||||||||||| ||||
Sbjct 18978 TGCTTTCCCGCAAAGATCAATCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATC 18919
Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634
|| ||| | | |||| ||||| | | || || || | ||||| ||| || ||
Sbjct 18918 TTAGCCTTAACATTGTCAATGGTGTCAGAGCTTTCAACCTCAAGGGTGATGGTCTTTCCT 18859
Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660
|||| |||||| |||||||| |||||
Sbjct 18858 GTCAAAGTTTTCACGAAAATTTGCAT 18833
Score = 95.1 bits (104), Expect = 1e-14
Identities = 149/209 (71%), Gaps = 6/209 (3%)
Strand=Plus/Minus
Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGT--GGACGAGTCCTCGA 133512
|| || | ||| ||||| ||||| || || ||||| | | || || || ||||| |
Sbjct 19494 AAGTGAAGGGTTGACTCCTTCTGGATGTTATAATCAGCAAGGGTCCGGCCG--TCCTCAA 19437
Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572
||||||| || || | || | | ||||||||| || || |||||||||||||| ||
Sbjct 19436 GCTGCTTTCCGGCAAAGATCAATCTCTGCTGGTCTGGTGGAATGCCTTCCTTGTCCTGGA 19377
Query 133573 TCTTTTGCTTGAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTG 133631
|| || |||| | | | |||| ||||||| | || || || | ||||| ||| ||
Sbjct 19376 TC-TTGGCTTTAACATTGTCAATAGTGTCGGAGCTTTCAACCTCAAGGGTGATGGTCTTT 19318
Query 133632 CCGGTCAGAGTTTTTACGAAAATCTGCAT 133660
||||||| || || || ||||| |||||
Sbjct 19317 CCGGTCAAGGTCTTCACAAAAATTTGCAT 19289
Score = 91.5 bits (100), Expect = 1e-13
Identities = 116/157 (74%), Gaps = 2/157 (1%)
Strand=Plus/Minus
Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564
|||||| |||||||| || || | || | | ||||||||| || || |||||||||||
Sbjct 19216 GTCCTCAAGCTGCTTTCCGGCAAAGATCAATCTCTGCTGGTCTGGGGGAATGCCTTCCTT 19157
Query 133565 GTCGGTGATCTTTTGCTTGAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGA 133623
||| |||| || |||| | | | |||| ||||||| | || || || | |||||
Sbjct 19156 GTCCTGGATC-TTGGCTTTAACATTGTCAATAGTGTCGGAGCTTTCAACCTCAAGGGTGA 19098
Query 133624 CGGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660
||| || ||||||| ||| || || ||||| |||||
Sbjct 19097 TGGTCTTTCCGGTCAAAGTCTTCACAAAAATTTGCAT 19061
>seq16835
Length=8075
Score = 111 bits (122), Expect = 2e-19
Identities = 145/198 (73%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522
|||||||| ||||| || ||||| ||| | | || ||| | ||||| |||||||| ||
Sbjct 6905 GTGGACTCCTTCTGGATGTTGTAGTCGGCAAGAGTACGACCA-TCCTCAAGCTGCTTTCC 6963
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
||| |||| | ||||||||||| || || || ||||||||||| |||||| ||
Sbjct 6964 GGCGAAAATCAAACGCTGCTGGTCTGGGGGAATCCCTTCCTTGTCCTGGATCTTGGCTTT 7023
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642
|| | || | ||||||| | ||| || || | ||||| || || || || || ||
Sbjct 7024 GACATTGTCGATGGTGTCGGAAGACTCAACCTCTAGGGTGATCGTCTTCCCCGTTAGGGT 7083
Query 133643 TTTTACGAAAATCTGCAT 133660
||| ||||| ||||||||
Sbjct 7084 TTTCACGAAGATCTGCAT 7101
>seq558
Length=67963
Score = 109 bits (120), Expect = 5e-19
Identities = 145/199 (73%), Gaps = 2/199 (1%)
Strand=Plus/Plus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521
||||||||| ||||| || ||||| || | | ||| | | | |||||||||||||| |
Sbjct 17121 GGTGGACTCCTTCTGGATGTTGTAGTCAGCTAGCGTTCGGCCA-TCCTCGAGCTGCTTAC 17179
Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581
| ||| |||| | ||||||||||| || || |||||||||||||| ||||| ||
Sbjct 17180 CGGCGAAAATCAATCGCTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGAATCTTAGCCT 17239
Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641
| | | |||| ||||| | | ||| || || | ||| | || ||||| ||||| |
Sbjct 17240 TAACATTGTCAATGGTGTCTGATGACTCTACCTCTAAGGTAATAGTCTTGCCCGTCAGGG 17299
Query 133642 TTTTTACGAAAATCTGCAT 133660
| || || || ||||||||
Sbjct 17300 TCTTCACAAAGATCTGCAT 17318
Score = 95.1 bits (104), Expect = 1e-14
Identities = 142/199 (71%), Gaps = 2/199 (1%)
Strand=Plus/Minus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521
|||||| || ||||| || ||||| || | | ||| | | | ||||| |||||||| |
Sbjct 63831 GGTGGATTCCTTCTGGATGTTGTAGTCAGCTAGCGTTCGGCCA-TCCTCAAGCTGCTTTC 63773
Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581
| || |||| | || ||||||||| || ||||||||||||||||| ||||| ||
Sbjct 63772 CTGCAAAAATCAACCTCTGCTGGTCTGGTGGGATGCCTTCCTTGTCCTGAATCTTAGCCT 63713
Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641
| | | |||| ||||| | | ||| || || | ||| | || ||||| || || |
Sbjct 63712 TAACATTGTCAATGGTGTCTGATGACTCTACCTCTAAGGTAATAGTCTTGCCCGTTAGGG 63653
Query 133642 TTTTTACGAAAATCTGCAT 133660
| || || || ||||||||
Sbjct 63652 TCTTCACAAAGATCTGCAT 63634
>seq545
Length=31085
Score = 93.3 bits (102), Expect = 4e-14
Identities = 145/205 (71%), Gaps = 2/205 (1%)
Strand=Plus/Minus
Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTG 133516
||||| ||| ||||||||||| |||||||| || ||| || ||||| || ||
Sbjct 2844 ATGTAAGGTAGACTCTTTCTGAATATTGTAGTCAGCCAGGGTCCTTCCATCCTCAAGTTG 2785
Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576
|||||| || | || || | ||||||||| ||||| || ||||||||||| ||| ||
Sbjct 2784 CTTGCCGGCAAAGATCAGTCTCTGCTGGTCTGGAGGAATCCCTTCCTTGTC-CTGAATTT 2726
Query 133577 TTG-CTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635
| | ||| | | |||| || |||| || || || | ||||| ||| || || |
Sbjct 2725 TGGCCTTCACGTTGTCAATGGTATCGGAACTTTCAACTTCAAGGGTGATGGTCTTTCCAG 2666
Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660
| || || || || || ||||||||
Sbjct 2665 TAAGTGTCTTGACAAAGATCTGCAT 2641
Score = 93.3 bits (102), Expect = 4e-14
Identities = 141/198 (71%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522
|| ||||||||||| || || || || | | ||| ||| | ||||| |||||||| ||
Sbjct 3749 GTAGACTCTTTCTGGATGTTATAGTCTGCAAGGGTGCGACCA-TCCTCAAGCTGCTTACC 3691
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
|| | ||||||| ||| || || || ||||| ||||||||||| |||||| ||
Sbjct 3690 AGCAAAGATGAGCCTCTGTTGATCTGGTGGGATCCCTTCCTTGTCCTGTATCTTTGCTTT 3631
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642
| | |||| || || | | |||||| || | |||| || || || ||||||||
Sbjct 3630 CACATTGTCAATAGTATCAGAGCTCTCCACCTCCAATGTGATTGTCTTCCCAGTCAGAGT 3571
Query 133643 TTTTACGAAAATCTGCAT 133660
|| || || ||||||||
Sbjct 3570 CTTCACAAAGATCTGCAT 3553
>seq30006
Length=21699
Score = 89.7 bits (98), Expect = 5e-13
Identities = 136/191 (71%), Gaps = 2/191 (1%)
Strand=Plus/Minus
Query 133471 CTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCCCGCGTAA 133529
||||||| || |||||||| | | || | | | || ||||||||||| || ||| |
Sbjct 12893 CTTTCTGAATGTTGTAATCAGCTAGAGTACGTCCA-TCTTCGAGCTGCTTTCCGGCGAAG 12835
Query 133530 ATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGC 133589
|| | ||||||||||| || || || ||||||||||| ||||| |||| |
Sbjct 12834 ATCAATCGCTGCTGGTCCGGTGGAATACCTTCCTTGTCTTGAATCTTAGCTTTGACATTG 12775
Query 133590 TCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACG 133649
|||| |||||| | | || || || | |||| || || || || |||||||| |||
Sbjct 12774 TCAATAGTGTCGCTTGATTCAACTTCAAGCGTGATCGTCTTCCCCGTAAGAGTTTTCACG 12715
Query 133650 AAAATCTGCAT 133660
|| ||||||||
Sbjct 12714 AAGATCTGCAT 12704
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 483161021747600
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