Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21] 42,990 sequences; 724,284,658 total letters Query= NC_025456.1 Length=46547 Score E Sequences producing significant alignments: (Bits) Value seq11014 185 3e-42 seq20193 172 2e-38 seq20218 100 8e-17 seq15728 96.9 1e-15 seq25757 95.1 4e-15 >seq11014 Length=29319 Score = 185 bits (204), Expect = 3e-42 Identities = 273/385 (71%), Gaps = 6/385 (2%) Strand=Plus/Plus Query 19532 AACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCAGCCACC 19591 ||||||||||| |||| ||||||| ||||||| || | || ||| | | | Sbjct 10063 AACCGTCTTTACATTGGACGGTTTGGTGTTTTGATGATCCC-TACCTTATTGACGGCWAC 10121 Query 19592 ATCTGC-TTCATTATTGCATTCATTGCGGCTCCACCAGTTGACATTGATGGCATCCGCGA 19650 |||| || |||||||| ||||||| ||||| ||||| ||||||||||| || | || Sbjct 10122 TTCTGTATTTATTATTGCCTTCATTGTTGCTCCTCCAGTAGACATTGATGGTATTGGTGA 10181 Query 19651 ACCCGTATCCGGTAGCCTTCTTTATGGAAACAACATCATATCGGGAGCCGTCGTTCCGAG 19710 ||| || || || || ||||| ||||||||||| || || || ||| | |||| | Sbjct 10182 ACCTGTTTCAGGGTCTCTACTTTACGGAAACAACATTATTTCCGGTGCCATTATTCCTAC 10241 Query 19711 --CAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAGTTCACTTGATGAA 19768 | ||| || || || |||| || |||||||| |||||||| || |||||||| Sbjct 10242 TTCTGCA--GCTATAGGTTTACATTTTTACCCAATCTGGGAAGCGGCATCCGTTGATGAA 10299 Query 19769 TGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCATCTAT 19828 ||| | | |||||| || || | |||| | || | |||||| | ||||| | | Sbjct 10300 TGGTTATTCAACGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGCGTAGCT 10359 Query 19829 GCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCTTGGATTTGT 19888 ||||||||| | |||||||| ||||||| || | || ||| | ||||||||| | Sbjct 10360 TGTTACATGGGTCRTGAGTGGGAGCTTAGCTTCCGTSTRGGTATGCGACCTTGGATTGCT 10419 Query 19889 GTTGCCTACTCTGCTCCGGTTGCAG 19913 ||||| || || |||| ||||||| Sbjct 10420 GTTGCATATTCAGCTCTTGTTGCAG 10444 >seq20193 Length=7469 Score = 172 bits (190), Expect = 2e-38 Identities = 254/357 (71%), Gaps = 6/357 (2%) Strand=Plus/Minus Query 19532 AACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCAGCCACC 19591 ||||||||||| |||| |||||||| ||||||| | | || ||| | || | Sbjct 6810 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCTC-TACCTTATTGACGGCAAC 6752 Query 19592 ATCTGC-TTCATTATTGCATTCATTGCGGCTCCACCAGTTGACATTGATGGCATCCGCGA 19650 | || || |||||||| |||||||| ||||| ||||| ||||||||||| || || || Sbjct 6751 TTYTGTATTTATTATTGCCTTCATTGCTGCTCCTCCAGTAGACATTGATGGTATTCGTGA 6692 Query 19651 ACCCGTATCCGGTAGCCTTCTTTATGGAAACAACATCATATCGGGAGCCGTCGTTCCGAG 19710 ||| || || || || ||| | ||||||||||| || || || ||| | |||| | Sbjct 6691 ACCTGTTTCAGGGTCTCTACTTHACGGAAACAACATTATTTCCGGTGCCATTATTCCTAC 6632 Query 19711 --CAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAGTTCACTTGATGAA 19768 | ||| || || || |||| || |||||||| |||||||| | || |||||||| Sbjct 6631 TTCTGCA--GCTATAGGTTTACATTTTTACCCAATCTGGGAAGCGACATCCGTTGATGAA 6574 Query 19769 TGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCATCTAT 19828 ||| | ||||||| || || | |||| | || | |||||| | ||||| | | Sbjct 6573 TGGTTATACAACGRTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGCGTAGCT 6514 Query 19829 GCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCTTGGATT 19885 ||||||||| || |||||||| ||||||| | || || ||| ||||||||| Sbjct 6513 TGTTACATGGGTCGTGAGTGGGAGCTTAGCTTCCATCTGGGTATGCAACCTTGGATT 6457 >seq20218 Length=9351 Score = 100 bits (110), Expect = 8e-17 Identities = 85/105 (81%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 20383 CAATGGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAATCTCGGGTTTGA 20442 ||| |||||||| ||| | ||||||| ||| || |||| |||||||| || || | || Sbjct 2103 CAAGGGTCGTGTAATTAACACTTGGGTTGATATCATCAACCGTGCTAACCTTGGTATGGA 2162 Query 20443 GGTGATGCATGAACGGAATGCTCATAACTTCCCACTTGACCTTGC 20487 || ||||||||||| ||||||||||||||||| || ||||| || Sbjct 2163 AGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGC 2207 >seq15728 Length=57915 Score = 96.9 bits (106), Expect = 1e-15 Identities = 110/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 20163 GTTACAAGTTTGGGCAAGAAGAAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTTG 20222 |||||| || | ||||| ||| | || ||||| || |||| || ||||||||| |||| Sbjct 13132 GTTACATATTCTGTCAAGAGGAAAAAACTTATAATATTGTAGTCGTTCATGGTTATTTTG 13191 Query 20223 GACGTTTGATCTTCCAATACGCTTCTTTCAACAATAGCCGTTCTCTACACTTCTTCCTTG 20282 | | ||||||| || ||| | | |||||| | ||||| ||||||||||||||| Sbjct 13192 GCTGATTGATCTACCGATATGTTAGTTTCAATGACTCTCGTTCGTTACACTTCTTCCTTG 13251 Query 20283 CTGCCTGGCCGGTGGTAGGGATTTGGTT 20310 |||| |||| | ||||| || ||||| Sbjct 13252 CTGCTTGGCATATAGTAGGTATCTGGTT 13279 >seq25757 Length=3733 Score = 95.1 bits (104), Expect = 4e-15 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 20333 ATGGCGTTTAATCTGAACGGTTTCAACTTTAACCAGTCCCTTCTCGACAACAATGGTCGT 20392 ||||| || || || || |||||||| || || || || | | |||| | ||||| Sbjct 3563 ATGGCTTTCAACCTAAATGGTTTCAATTTCAATCAATCTGTAGTTGACAGTCAGAGTCGT 3622 Query 20393 GTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAATCTCGGGTTTGAGGTGATGCAT 20452 || ||| | |||||| |||| || | |||||||| || || | || || |||||| Sbjct 3623 GTAATTAACACTTGGACTGATATATATATACGTGCTAACCTTGGTATGGAAGTTATGCAT 3682 Query 20453 GAACGGAATGCTCATAACTTCCCACTTGACCTTGC 20487 ||||| ||||||||||||||||| || ||||| || Sbjct 3683 GAACGTAATGCTCATAACTTCCCTCTAGACCTAGC 3717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148752821967420