Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21]
42,990 sequences; 724,284,658 total letters
Query= NC_025456.1
Length=46547
Score E
Sequences producing significant alignments: (Bits) Value
seq11014 185 3e-42
seq20193 172 2e-38
seq20218 100 8e-17
seq15728 96.9 1e-15
seq25757 95.1 4e-15
>seq11014
Length=29319
Score = 185 bits (204), Expect = 3e-42
Identities = 273/385 (71%), Gaps = 6/385 (2%)
Strand=Plus/Plus
Query 19532 AACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCAGCCACC 19591
||||||||||| |||| ||||||| ||||||| || | || ||| | | |
Sbjct 10063 AACCGTCTTTACATTGGACGGTTTGGTGTTTTGATGATCCC-TACCTTATTGACGGCWAC 10121
Query 19592 ATCTGC-TTCATTATTGCATTCATTGCGGCTCCACCAGTTGACATTGATGGCATCCGCGA 19650
|||| || |||||||| ||||||| ||||| ||||| ||||||||||| || | ||
Sbjct 10122 TTCTGTATTTATTATTGCCTTCATTGTTGCTCCTCCAGTAGACATTGATGGTATTGGTGA 10181
Query 19651 ACCCGTATCCGGTAGCCTTCTTTATGGAAACAACATCATATCGGGAGCCGTCGTTCCGAG 19710
||| || || || || ||||| ||||||||||| || || || ||| | |||| |
Sbjct 10182 ACCTGTTTCAGGGTCTCTACTTTACGGAAACAACATTATTTCCGGTGCCATTATTCCTAC 10241
Query 19711 --CAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAGTTCACTTGATGAA 19768
| ||| || || || |||| || |||||||| |||||||| || ||||||||
Sbjct 10242 TTCTGCA--GCTATAGGTTTACATTTTTACCCAATCTGGGAAGCGGCATCCGTTGATGAA 10299
Query 19769 TGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCATCTAT 19828
||| | | |||||| || || | |||| | || | |||||| | ||||| | |
Sbjct 10300 TGGTTATTCAACGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGCGTAGCT 10359
Query 19829 GCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCTTGGATTTGT 19888
||||||||| | |||||||| ||||||| || | || ||| | ||||||||| |
Sbjct 10360 TGTTACATGGGTCRTGAGTGGGAGCTTAGCTTCCGTSTRGGTATGCGACCTTGGATTGCT 10419
Query 19889 GTTGCCTACTCTGCTCCGGTTGCAG 19913
||||| || || |||| |||||||
Sbjct 10420 GTTGCATATTCAGCTCTTGTTGCAG 10444
>seq20193
Length=7469
Score = 172 bits (190), Expect = 2e-38
Identities = 254/357 (71%), Gaps = 6/357 (2%)
Strand=Plus/Minus
Query 19532 AACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCAGCCACC 19591
||||||||||| |||| |||||||| ||||||| | | || ||| | || |
Sbjct 6810 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCTC-TACCTTATTGACGGCAAC 6752
Query 19592 ATCTGC-TTCATTATTGCATTCATTGCGGCTCCACCAGTTGACATTGATGGCATCCGCGA 19650
| || || |||||||| |||||||| ||||| ||||| ||||||||||| || || ||
Sbjct 6751 TTYTGTATTTATTATTGCCTTCATTGCTGCTCCTCCAGTAGACATTGATGGTATTCGTGA 6692
Query 19651 ACCCGTATCCGGTAGCCTTCTTTATGGAAACAACATCATATCGGGAGCCGTCGTTCCGAG 19710
||| || || || || ||| | ||||||||||| || || || ||| | |||| |
Sbjct 6691 ACCTGTTTCAGGGTCTCTACTTHACGGAAACAACATTATTTCCGGTGCCATTATTCCTAC 6632
Query 19711 --CAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAGTTCACTTGATGAA 19768
| ||| || || || |||| || |||||||| |||||||| | || ||||||||
Sbjct 6631 TTCTGCA--GCTATAGGTTTACATTTTTACCCAATCTGGGAAGCGACATCCGTTGATGAA 6574
Query 19769 TGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCATCTAT 19828
||| | ||||||| || || | |||| | || | |||||| | ||||| | |
Sbjct 6573 TGGTTATACAACGRTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGCGTAGCT 6514
Query 19829 GCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCTTGGATT 19885
||||||||| || |||||||| ||||||| | || || ||| |||||||||
Sbjct 6513 TGTTACATGGGTCGTGAGTGGGAGCTTAGCTTCCATCTGGGTATGCAACCTTGGATT 6457
>seq20218
Length=9351
Score = 100 bits (110), Expect = 8e-17
Identities = 85/105 (81%), Gaps = 0/105 (0%)
Strand=Plus/Plus
Query 20383 CAATGGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAATCTCGGGTTTGA 20442
||| |||||||| ||| | ||||||| ||| || |||| |||||||| || || | ||
Sbjct 2103 CAAGGGTCGTGTAATTAACACTTGGGTTGATATCATCAACCGTGCTAACCTTGGTATGGA 2162
Query 20443 GGTGATGCATGAACGGAATGCTCATAACTTCCCACTTGACCTTGC 20487
|| ||||||||||| ||||||||||||||||| || ||||| ||
Sbjct 2163 AGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGC 2207
>seq15728
Length=57915
Score = 96.9 bits (106), Expect = 1e-15
Identities = 110/148 (74%), Gaps = 0/148 (0%)
Strand=Plus/Plus
Query 20163 GTTACAAGTTTGGGCAAGAAGAAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTTG 20222
|||||| || | ||||| ||| | || ||||| || |||| || ||||||||| ||||
Sbjct 13132 GTTACATATTCTGTCAAGAGGAAAAAACTTATAATATTGTAGTCGTTCATGGTTATTTTG 13191
Query 20223 GACGTTTGATCTTCCAATACGCTTCTTTCAACAATAGCCGTTCTCTACACTTCTTCCTTG 20282
| | ||||||| || ||| | | |||||| | ||||| |||||||||||||||
Sbjct 13192 GCTGATTGATCTACCGATATGTTAGTTTCAATGACTCTCGTTCGTTACACTTCTTCCTTG 13251
Query 20283 CTGCCTGGCCGGTGGTAGGGATTTGGTT 20310
|||| |||| | ||||| || |||||
Sbjct 13252 CTGCTTGGCATATAGTAGGTATCTGGTT 13279
>seq25757
Length=3733
Score = 95.1 bits (104), Expect = 4e-15
Identities = 114/155 (74%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 20333 ATGGCGTTTAATCTGAACGGTTTCAACTTTAACCAGTCCCTTCTCGACAACAATGGTCGT 20392
||||| || || || || |||||||| || || || || | | |||| | |||||
Sbjct 3563 ATGGCTTTCAACCTAAATGGTTTCAATTTCAATCAATCTGTAGTTGACAGTCAGAGTCGT 3622
Query 20393 GTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAATCTCGGGTTTGAGGTGATGCAT 20452
|| ||| | |||||| |||| || | |||||||| || || | || || ||||||
Sbjct 3623 GTAATTAACACTTGGACTGATATATATATACGTGCTAACCTTGGTATGGAAGTTATGCAT 3682
Query 20453 GAACGGAATGCTCATAACTTCCCACTTGACCTTGC 20487
||||| ||||||||||||||||| || ||||| ||
Sbjct 3683 GAACGTAATGCTCATAACTTCCCTCTAGACCTAGC 3717
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 148752821967420
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |