Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21] 42,990 sequences; 724,284,658 total letters Query= NC_025461.1 Length=45871 Score E Sequences producing significant alignments: (Bits) Value seq11014 179 1e-40 seq20193 176 1e-39 seq20218 105 2e-18 seq15728 105 2e-18 seq25757 96.9 1e-15 seq46 82.4 2e-11 >seq11014 Length=29319 Score = 179 bits (198), Expect = 1e-40 Identities = 282/402 (70%), Gaps = 6/402 (1%) Strand=Plus/Plus Query 28660 AACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCAGCCACC 28719 ||||||||||| |||| ||||||| ||||||| || | || ||| | | | Sbjct 10063 AACCGTCTTTACATTGGACGGTTTGGTGTTTTGATGATCCC-TACCTTATTGACGGCWAC 10121 Query 28720 ATCTGC-TTCATTATTGCATTCATTGCGGCACCACCAGTTGACATTGATGGCATCCGCGA 28778 |||| || |||||||| ||||||| || || ||||| ||||||||||| || | || Sbjct 10122 TTCTGTATTTATTATTGCCTTCATTGTTGCTCCTCCAGTAGACATTGATGGTATTGGTGA 10181 Query 28779 ACCTGTCGCTGGAAGTCTTCTCTATGGAAACAACATCATATCGGGAGCCGTCGTACCGAG 28838 |||||| | || ||| || || ||||||||||| || || || ||| | | || | Sbjct 10182 ACCTGTTTCAGGGTCTCTACTTTACGGAAACAACATTATTTCCGGTGCCATTATTCCTAC 10241 Query 28839 --CAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAA 28896 | ||| || || || |||| || |||||||| |||||||| || |||||||| Sbjct 10242 TTCTGCA--GCTATAGGTTTACATTTTTACCCAATCTGGGAAGCGGCATCCGTTGATGAA 10299 Query 28897 TGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGTCTAT 28956 ||| | | |||||| || || | |||| | || | |||||| | ||||||| | Sbjct 10300 TGGTTATTCAACGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGCGTAGCT 10359 Query 28957 GCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCGTGGATTTGT 29016 ||||||||| | |||||||| ||||||| || | || ||| | || |||||| | Sbjct 10360 TGTTACATGGGTCRTGAGTGGGAGCTTAGCTTCCGTSTRGGTATGCGACCTTGGATTGCT 10419 Query 29017 GTCGCATACTCAGCTCCCGTCGCAGCGGCATCTGCGGTTTTC 29058 || ||||| ||||||| || |||| || | || |||||| Sbjct 10420 GTTGCATATTCAGCTCTTGTTGCAGTTGCTACCGCAGTTTTC 10461 >seq20193 Length=7469 Score = 176 bits (194), Expect = 1e-39 Identities = 312/455 (69%), Gaps = 28/455 (6%) Strand=Plus/Minus Query 28660 AACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCAGCCACC 28719 ||||||||||| |||| |||||||| ||||||| | | || ||| | || | Sbjct 6810 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCTC-TACCTTATTGACGGCAAC 6752 Query 28720 ATCTGC-TTCATTATTGCATTCATTGCGGCACCACCAGTTGACATTGATGGCATCCGCGA 28778 | || || |||||||| |||||||| || || ||||| ||||||||||| || || || Sbjct 6751 TTYTGTATTTATTATTGCCTTCATTGCTGCTCCTCCAGTAGACATTGATGGTATTCGTGA 6692 Query 28779 ACCTGTCGCTGGAAGTCTTCTCTATGGAAACAACATCATATCGGGAGCCGTCGTACCGAG 28838 |||||| | || ||| || | ||||||||||| || || || ||| | | || | Sbjct 6691 ACCTGTTTCAGGGTCTCTACTTHACGGAAACAACATTATTTCCGGTGCCATTATTCCTAC 6632 Query 28839 --CAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAA 28896 | ||| || || || |||| || |||||||| |||||||| | || |||||||| Sbjct 6631 TTCTGCA--GCTATAGGTTTACATTTTTACCCAATCTGGGAAGCGACATCCGTTGATGAA 6574 Query 28897 TGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGTCTAT 28956 ||| | ||||||| || || | |||| | || | |||||| | ||||||| | Sbjct 6573 TGGTTATACAACGRTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGCGTAGCT 6514 Query 28957 GCTTACATGGGACGCGAGTGGGAACTTAGCT---ATC----------------GA---CT 28994 ||||||||| || |||||||| ||||||| ||| || || Sbjct 6513 TGTTACATGGGTCGTGAGTGGGAGCTTAGCTTCCATCTGGGTATGCAACCTTGGATTGCT 6454 Query 28995 AGGAATGAGGCCGTGGATTTGTGTCGCATACTCAGCTCCCGTCGCAGCGGCATCTGCGGT 29054 || ||| | |||||| ||| ||||| |||||||| || ||||| || | || || Sbjct 6453 GGGTATGCAACTTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACCGCAGT 6394 Query 29055 TTTCCTCGTCTACCCATTCGGTCAAGGTTCTTTTA 29089 |||| | |||||||| | ||||||| | ||||| Sbjct 6393 TTTCTTAATCTACCCAATTGGTCAAGTATTTTTTA 6359 >seq20218 Length=9351 Score = 105 bits (116), Expect = 2e-18 Identities = 87/106 (82%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 29511 CAATGGTCGTGTCATTAATACTTGGGCTGATGTTCTCAATCGCGCTAACCTCGGCTTTGA 29570 ||| |||||||| ||||| ||||||| |||| | |||| || |||||||| || | || Sbjct 2103 CAAGGGTCGTGTAATTAACACTTGGGTTGATATCATCAACCGTGCTAACCTTGGTATGGA 2162 Query 29571 AGTAATGCATGAGCGTAATGCTCATAACTTCCCACTTGATCTGGCT 29616 ||| |||||||| |||||||||||||||||||| || || || ||| Sbjct 2163 AGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGCT 2208 >seq15728 Length=57915 Score = 105 bits (116), Expect = 2e-18 Identities = 112/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 29291 GTTACAAGTTTGGACAAGAAGAAGAGACTTATAACATCGTAGCCGCTCACGGTTACTTTG 29350 |||||| || | ||||| ||| | |||||||| || |||| || ||| ||||| |||| Sbjct 13132 GTTACATATTCTGTCAAGAGGAAAAAACTTATAATATTGTAGTCGTTCATGGTTATTTTG 13191 Query 29351 GACGTTTGATCTTCCAATATGCTTCTTTCAATAATAGCCGTTCTCTACACTTCTTCCTTG 29410 | | ||||||| || ||||| | ||||||| | ||||| ||||||||||||||| Sbjct 13192 GCTGATTGATCTACCGATATGTTAGTTTCAATGACTCTCGTTCGTTACACTTCTTCCTTG 13251 Query 29411 CTGCCTGGCCGGTGGTAGGGATTTGGTT 29438 |||| |||| | ||||| || ||||| Sbjct 13252 CTGCTTGGCATATAGTAGGTATCTGGTT 13279 >seq25757 Length=3733 Score = 96.9 bits (106), Expect = 1e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 29461 ATGGCGTTTAATCTGAACGGTTTTAACTTTAACCAGTCGCTTCTCGACAACAATGGTCGT 29520 ||||| || || || || ||||| || || || || || | | |||| | ||||| Sbjct 3563 ATGGCTTTCAACCTAAATGGTTTCAATTTCAATCAATCTGTAGTTGACAGTCAGAGTCGT 3622 Query 29521 GTCATTAATACTTGGGCTGATGTTCTCAATCGCGCTAACCTCGGCTTTGAAGTAATGCAT 29580 || ||||| |||||| ||||| | | || |||||||| || | ||||| |||||| Sbjct 3623 GTAATTAACACTTGGACTGATATATATATACGTGCTAACCTTGGTATGGAAGTTATGCAT 3682 Query 29581 GAGCGTAATGCTCATAACTTCCCACTTGATCTGGCT 29616 || |||||||||||||||||||| || || || ||| Sbjct 3683 GAACGTAATGCTCATAACTTCCCTCTAGACCTAGCT 3718 >seq46 Length=65133 Score = 82.4 bits (90), Expect = 2e-11 Identities = 137/196 (70%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 29396 TACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTT 29455 |||||||||||| ||||| ||||| || ||||| || ||||| | || || || | Sbjct 51962 TACACTTCTTCCGAGCTGCTTGGCCCGTAGTAGGTATCTGGTTTACCGCTTTAGGTATCA 52021 Query 29456 CTACAATGGCGTTTAATCTGAACGGTTTTAACTTTAACCAGTCGCTTCTCGACAACAATG 29515 | |||| || | || || ||||| || || ||||| || | | || | | Sbjct 52022 GCGCTATGGGTTTCACCCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAGT 52081 Query 29516 GTCGTGTCATTAATACTTGGGCTGATGT---TC-TCAATCGCGCTAACCTCGGCTTTGAA 29571 ||| ||| ||||| |||||||| ||| | || |||| || |||||||| || | ||| Sbjct 52082 GTCATGTAATTAACACTTGGGCCGATATGTATCATCAACCGTGCTAACCTTGGTATGGAA 52141 Query 29572 GTAATGCATGAGCGTA 29587 || |||||||| |||| Sbjct 52142 GTTATGCATGAACGTA 52157 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146590726294540