Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21]
42,990 sequences; 724,284,658 total letters
Query= NC_025464.1
Length=44147
Score E
Sequences producing significant alignments: (Bits) Value
seq20193 223 1e-53
seq11014 223 1e-53
seq24530 118 3e-22
seq31657 100 8e-17
seq25757 98.7 3e-16
seq20218 98.7 3e-16
seq46 91.5 4e-14
seq18686 89.7 1e-13
>seq20193
Length=7469
Score = 223 bits (246), Expect = 1e-53
Identities = 332/467 (71%), Gaps = 31/467 (7%)
Strand=Plus/Minus
Query 18731 ACTGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACTGATGATTC 18790
||||| |||| || || || ||||||||||| || || |||||||| |||||||
Sbjct 6829 ACTGGATAACTAGCACTGA-AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCT 6771
Query 18791 CGTGTCTCCTTG-CAGCTACTATTTGT-TTCATTATTGCCTTCATTGCTGCACCTCCTGT 18848
| | || ||| | || ||| | ||| || |||||||||||||||||||| ||||| ||
Sbjct 6770 C-TACCTTATTGACGGCAACT-TYTGTATTTATTATTGCCTTCATTGCTGCTCCTCCAGT 6713
Query 18849 AGACATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTTCTTTATGGAAACAACATCAT 18908
|||||||||||| || || || |||||| |||| ||| ||| | ||||||||||| ||
Sbjct 6712 AGACATTGATGGTATTCGTGAACCTGTTTCAGGGTCTCTACTTHACGGAAACAACATTAT 6653
Query 18909 ATCGGGAGCCGTCGTTCCGA--GCAGCAATGCCATCGGACTACACTTCTACCCAATTTGG 18966
|| || ||| | |||| | | ||| || || || |||| || |||||||| |||
Sbjct 6652 TTCCGGTGCCATTATTCCTACTTCTGCA--GCTATAGGTTTACATTTTTACCCAATCTGG 6595
Query 18967 GAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTC 19026
||||| | || ||||||||||| | ||||||| || || | |||| | || |
Sbjct 6594 GAAGCGACATCCGTTGATGAATGGTTATACAACGRTGGTCCTTATGAACTAATTGTTCTA 6535
Query 19027 CACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGTGGGAACTTAGCT---ATC-- 19081
|||||| | ||||||| | ||||||||| || |||||||| ||||||| |||
Sbjct 6534 CACTTCTTACTTGGCGTAGCTTGTTACATGGGTCGTGAGTGGGAGCTTAGCTTCCATCTG 6475
Query 19082 --------------GA---CTAGGGATGCGCCCTTGGATTTGTGTTGCCTACTCAGCTCC 19124
|| || || |||| | ||||||| |||||| || ||||||||
Sbjct 6474 GGTATGCAACCTTGGATTGCTGGGTATGCAACTTTGGATTGCTGTTGCATATTCAGCTCC 6415
Query 19125 TGTTGCCGCAGCCTCTGCGGTCTTCCTTGTCTATCCATTTGGTCAAG 19171
|||||| || || | || || ||| | |||| ||| |||||||||
Sbjct 6414 TGTTGCAGCTGCTACCGCAGTTTTCTTAATCTACCCAATTGGTCAAG 6368
>seq11014
Length=29319
Score = 223 bits (246), Expect = 1e-53
Identities = 288/393 (73%), Gaps = 8/393 (2%)
Strand=Plus/Plus
Query 18742 AGTACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACTGATGATTCCGTGTCTCCTT 18801
|| || || ||||||||||| || || ||||||| ||||||| || | || ||
Sbjct 10054 AGCACTGAAAACCGTCTTTACATTGGACGGTTTGGTGTTTTGATGATCCC-TACCTTATT 10112
Query 18802 G-CAGCTACTATTTGT-TTCATTATTGCCTTCATTGCTGCACCTCCTGTAGACATTGATG 18859
| | || ||| | ||| || |||||||||||||||| ||| ||||| |||||||||||||
Sbjct 10113 GACGGCWACT-TCTGTATTTATTATTGCCTTCATTGTTGCTCCTCCAGTAGACATTGATG 10171
Query 18860 GCATCCGCGAGCCTGTTGCAGGCAGTCTTCTTTATGGAAACAACATCATATCGGGAGCCG 18919
| || | || |||||| |||| ||| ||||| ||||||||||| || || || |||
Sbjct 10172 GTATTGGTGAACCTGTTTCAGGGTCTCTACTTTACGGAAACAACATTATTTCCGGTGCCA 10231
Query 18920 TCGTTCCGAG--CAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAATTC 18977
| |||| | | ||| || || || |||| || |||||||| |||||||| ||
Sbjct 10232 TTATTCCTACTTCTGCA--GCTATAGGTTTACATTTTTACCCAATCTGGGAAGCGGCATC 10289
Query 18978 ACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCAT 19037
||||||||||| | | |||||| || || | |||| | || | |||||| | |
Sbjct 10290 CGTTGATGAATGGTTATTCAACGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACT 10349
Query 19038 TGGCGTCTATGCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGGATGCGCCC 19097
|||||| | ||||||||| | |||||||| ||||||| || | || ||||| ||
Sbjct 10350 TGGCGTAGCTTGTTACATGGGTCRTGAGTGGGAGCTTAGCTTCCGTSTRGGTATGCGACC 10409
Query 19098 TTGGATTTGTGTTGCCTACTCAGCTCCTGTTGC 19130
||||||| |||||| || ||||||| ||||||
Sbjct 10410 TTGGATTGCTGTTGCATATTCAGCTCTTGTTGC 10442
>seq24530
Length=26533
Score = 118 bits (130), Expect = 3e-22
Identities = 178/254 (70%), Gaps = 0/254 (0%)
Strand=Plus/Minus
Query 19207 GGTACGTTCAACTACATGCTTGTATTCCAGGCTGAACATAACATCCTCATGCACCCGTTC 19266
||||| ||||| | |||| |||||||||||||||| || |||||||| |||||||| ||
Sbjct 795 GGTACTTTCAATTTCATGATTGTATTCCAGGCTGAVCACAACATCCTTATGCACCCATTT 736
Query 19267 CACATGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCACTATTTAGTGCGATGCACGGTTCG 19326
||||| | || | |||||||| |||| || ||||| ||| | ||||| | |||
Sbjct 735 CACATCTTAGGCCTAGCTGGTGTAAAATGCGGCTCCCTATTCAGTACTATGCATGCTTCA 676
Query 19327 CTTGTTACGTCCTCGCTTGTGCGTGAAACTACTGAAGAGGTATCTCAGAACTATGGCTAC 19386
|||| || || || | | |||| || || | | |||| || | || |||
Sbjct 675 TTTGTAACTTCTAGTTTTATAAGGGAAAGCACATAAAATGAATCTGCTAATGAAGGTTAC 616
Query 19387 AAGTTTGGGCAAGAAGAAGAGACTTATAACATTGTTGCTGCTCATGGGTATTTTGGTCGG 19446
| || | ||||| ||||| ||||| || || || || | ||||| |||||||| |
Sbjct 615 AGATTCGATCAAGAGGAAGAAACTTAGAATATCGTAGCCGATCATGCTTATTTTGGCTGA 556
Query 19447 CTTATTTTCCAGTA 19460
| || ||||| ||
Sbjct 555 TTGATCTTCCAATA 542
>seq31657
Length=14304
Score = 100 bits (110), Expect = 8e-17
Identities = 110/147 (75%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 19126 GTTGCCGCAGCCTCTGCGGTCTTCCTTGTCTATCCATTTGGTCAAGGTTCCTTTAGCGAC 19185
||||| || || | || || ||| | |||| ||| | |||||||| ||| ||
Sbjct 282 GTTGCAGCTGCTACCGCAGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGAT 341
Query 19186 GCTATGCCTTTGGGTATTAGTGGTACGTTCAACTACATGCTTGTATTCCAGGCTGAACAT 19245
| ||||||| | || || |||||| ||||| | |||| || ||||||||||||||||
Sbjct 342 GGTATGCCTCTAGGAATCTCTGGTACTTTCAATTTCATGATTVTATTCCAGGCTGAACAC 401
Query 19246 AACATCCTCATGCACCCGTTCCACATG 19272
|||||||| |||||||| || ||||||
Sbjct 402 AACATCCTTATGCACCCATTTCACATG 428
>seq25757
Length=3733
Score = 98.7 bits (108), Expect = 3e-16
Identities = 111/149 (74%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 19552 ATGGCATTCAACTTGAATGGCTTTAACTTTAACCAGTCCCTTCTTGACAACAATGGTCGT 19611
||||| |||||| | ||||| || || || || || || | |||||| | |||||
Sbjct 3563 ATGGCTTTCAACCTAAATGGTTTCAATTTCAATCAATCTGTAGTTGACAGTCAGAGTCGT 3622
Query 19612 GTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAACCTCGGCTTTGAGGTAATGCAC 19671
|| ||| | |||||| |||| || | ||||||||||| || | || || |||||
Sbjct 3623 GTAATTAACACTTGGACTGATATATATATACGTGCTAACCTTGGTATGGAAGTTATGCAT 3682
Query 19672 GAACGTAATGCTCATAACTTCCCACTTGA 19700
||||||||||||||||||||||| || ||
Sbjct 3683 GAACGTAATGCTCATAACTTCCCTCTAGA 3711
>seq20218
Length=9351
Score = 98.7 bits (108), Expect = 3e-16
Identities = 81/99 (82%), Gaps = 0/99 (0%)
Strand=Plus/Plus
Query 19602 CAATGGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAACCTCGGCTTTGA 19661
||| |||||||| ||| | ||||||| ||| || |||| ||||||||||| || | ||
Sbjct 2103 CAAGGGTCGTGTAATTAACACTTGGGTTGATATCATCAACCGTGCTAACCTTGGTATGGA 2162
Query 19662 GGTAATGCACGAACGTAATGCTCATAACTTCCCACTTGA 19700
|| ||||| ||||||||||||||||||||||| || ||
Sbjct 2163 AGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGA 2201
>seq46
Length=65133
Score = 91.5 bits (100), Expect = 4e-14
Identities = 139/196 (71%), Gaps = 4/196 (2%)
Strand=Plus/Plus
Query 19487 TACATTTCTTTTTGGCTGCTTGGCCTGTGGTTGGCATTTGGTTTGCCGCCCTTGGGGTAA 19546
|||| ||||| ||||||||||| || || || || |||||| |||| | || | |
Sbjct 51962 TACACTTCTTCCGAGCTGCTTGGCCCGTAGTAGGTATCTGGTTTACCGCTTTAGGTATCA 52021
Query 19547 GCACCATGGCATTCAACTTGAATGGCTTTAACTTTAACCAGTCCCTTCTTGACAACAATG 19606
|| | |||| |||| | | ||||| || || || ||||| || | |||| | |
Sbjct 52022 GCGCTATGGGTTTCACCCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAGT 52081
Query 19607 GTCGTGTCATTGATACTTGGGCTGACAT---TC-TCAATCGTGCTAACCTCGGCTTTGAG 19662
||| ||| ||| | |||||||| || || || |||| ||||||||||| || | ||
Sbjct 52082 GTCATGTAATTAACACTTGGGCCGATATGTATCATCAACCGTGCTAACCTTGGTATGGAA 52141
Query 19663 GTAATGCACGAACGTA 19678
|| ||||| |||||||
Sbjct 52142 GTTATGCATGAACGTA 52157
>seq18686
Length=60695
Score = 89.7 bits (98), Expect = 1e-13
Identities = 81/102 (79%), Gaps = 0/102 (0%)
Strand=Plus/Minus
Query 18825 TGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGCATCCGCGAGCCTGTTGCAGGCAG 18884
||||||||||||||| |||| |||||||||||||| || || || |||||| ||||
Sbjct 6049 TGCCTTCATTGCTGCTCCTCTAGTAGACATTGATGGTATTCGTGAACCTGTTTCAGGGTC 5990
Query 18885 TCTTCTTTATGGAAACAACATCATATCGGGAGCCGTCGTTCC 18926
||| ||| | ||||||||||| || || || |||| ||||
Sbjct 5989 TCTACTTAACGGAAACAACATTATTTCCGGTTCCGTTATTCC 5948
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 141076742655420
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |