Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21] 42,990 sequences; 724,284,658 total letters Query= NC_025464.1 Length=44147 Score E Sequences producing significant alignments: (Bits) Value seq20193 223 1e-53 seq11014 223 1e-53 seq24530 118 3e-22 seq31657 100 8e-17 seq25757 98.7 3e-16 seq20218 98.7 3e-16 seq46 91.5 4e-14 seq18686 89.7 1e-13 >seq20193 Length=7469 Score = 223 bits (246), Expect = 1e-53 Identities = 332/467 (71%), Gaps = 31/467 (7%) Strand=Plus/Minus Query 18731 ACTGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACTGATGATTC 18790 ||||| |||| || || || ||||||||||| || || |||||||| ||||||| Sbjct 6829 ACTGGATAACTAGCACTGA-AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCT 6771 Query 18791 CGTGTCTCCTTG-CAGCTACTATTTGT-TTCATTATTGCCTTCATTGCTGCACCTCCTGT 18848 | | || ||| | || ||| | ||| || |||||||||||||||||||| ||||| || Sbjct 6770 C-TACCTTATTGACGGCAACT-TYTGTATTTATTATTGCCTTCATTGCTGCTCCTCCAGT 6713 Query 18849 AGACATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTTCTTTATGGAAACAACATCAT 18908 |||||||||||| || || || |||||| |||| ||| ||| | ||||||||||| || Sbjct 6712 AGACATTGATGGTATTCGTGAACCTGTTTCAGGGTCTCTACTTHACGGAAACAACATTAT 6653 Query 18909 ATCGGGAGCCGTCGTTCCGA--GCAGCAATGCCATCGGACTACACTTCTACCCAATTTGG 18966 || || ||| | |||| | | ||| || || || |||| || |||||||| ||| Sbjct 6652 TTCCGGTGCCATTATTCCTACTTCTGCA--GCTATAGGTTTACATTTTTACCCAATCTGG 6595 Query 18967 GAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTC 19026 ||||| | || ||||||||||| | ||||||| || || | |||| | || | Sbjct 6594 GAAGCGACATCCGTTGATGAATGGTTATACAACGRTGGTCCTTATGAACTAATTGTTCTA 6535 Query 19027 CACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGTGGGAACTTAGCT---ATC-- 19081 |||||| | ||||||| | ||||||||| || |||||||| ||||||| ||| Sbjct 6534 CACTTCTTACTTGGCGTAGCTTGTTACATGGGTCGTGAGTGGGAGCTTAGCTTCCATCTG 6475 Query 19082 --------------GA---CTAGGGATGCGCCCTTGGATTTGTGTTGCCTACTCAGCTCC 19124 || || || |||| | ||||||| |||||| || |||||||| Sbjct 6474 GGTATGCAACCTTGGATTGCTGGGTATGCAACTTTGGATTGCTGTTGCATATTCAGCTCC 6415 Query 19125 TGTTGCCGCAGCCTCTGCGGTCTTCCTTGTCTATCCATTTGGTCAAG 19171 |||||| || || | || || ||| | |||| ||| ||||||||| Sbjct 6414 TGTTGCAGCTGCTACCGCAGTTTTCTTAATCTACCCAATTGGTCAAG 6368 >seq11014 Length=29319 Score = 223 bits (246), Expect = 1e-53 Identities = 288/393 (73%), Gaps = 8/393 (2%) Strand=Plus/Plus Query 18742 AGTACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACTGATGATTCCGTGTCTCCTT 18801 || || || ||||||||||| || || ||||||| ||||||| || | || || Sbjct 10054 AGCACTGAAAACCGTCTTTACATTGGACGGTTTGGTGTTTTGATGATCCC-TACCTTATT 10112 Query 18802 G-CAGCTACTATTTGT-TTCATTATTGCCTTCATTGCTGCACCTCCTGTAGACATTGATG 18859 | | || ||| | ||| || |||||||||||||||| ||| ||||| ||||||||||||| Sbjct 10113 GACGGCWACT-TCTGTATTTATTATTGCCTTCATTGTTGCTCCTCCAGTAGACATTGATG 10171 Query 18860 GCATCCGCGAGCCTGTTGCAGGCAGTCTTCTTTATGGAAACAACATCATATCGGGAGCCG 18919 | || | || |||||| |||| ||| ||||| ||||||||||| || || || ||| Sbjct 10172 GTATTGGTGAACCTGTTTCAGGGTCTCTACTTTACGGAAACAACATTATTTCCGGTGCCA 10231 Query 18920 TCGTTCCGAG--CAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAATTC 18977 | |||| | | ||| || || || |||| || |||||||| |||||||| || Sbjct 10232 TTATTCCTACTTCTGCA--GCTATAGGTTTACATTTTTACCCAATCTGGGAAGCGGCATC 10289 Query 18978 ACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCAT 19037 ||||||||||| | | |||||| || || | |||| | || | |||||| | | Sbjct 10290 CGTTGATGAATGGTTATTCAACGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACT 10349 Query 19038 TGGCGTCTATGCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGGATGCGCCC 19097 |||||| | ||||||||| | |||||||| ||||||| || | || ||||| || Sbjct 10350 TGGCGTAGCTTGTTACATGGGTCRTGAGTGGGAGCTTAGCTTCCGTSTRGGTATGCGACC 10409 Query 19098 TTGGATTTGTGTTGCCTACTCAGCTCCTGTTGC 19130 ||||||| |||||| || ||||||| |||||| Sbjct 10410 TTGGATTGCTGTTGCATATTCAGCTCTTGTTGC 10442 >seq24530 Length=26533 Score = 118 bits (130), Expect = 3e-22 Identities = 178/254 (70%), Gaps = 0/254 (0%) Strand=Plus/Minus Query 19207 GGTACGTTCAACTACATGCTTGTATTCCAGGCTGAACATAACATCCTCATGCACCCGTTC 19266 ||||| ||||| | |||| |||||||||||||||| || |||||||| |||||||| || Sbjct 795 GGTACTTTCAATTTCATGATTGTATTCCAGGCTGAVCACAACATCCTTATGCACCCATTT 736 Query 19267 CACATGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCACTATTTAGTGCGATGCACGGTTCG 19326 ||||| | || | |||||||| |||| || ||||| ||| | ||||| | ||| Sbjct 735 CACATCTTAGGCCTAGCTGGTGTAAAATGCGGCTCCCTATTCAGTACTATGCATGCTTCA 676 Query 19327 CTTGTTACGTCCTCGCTTGTGCGTGAAACTACTGAAGAGGTATCTCAGAACTATGGCTAC 19386 |||| || || || | | |||| || || | | |||| || | || ||| Sbjct 675 TTTGTAACTTCTAGTTTTATAAGGGAAAGCACATAAAATGAATCTGCTAATGAAGGTTAC 616 Query 19387 AAGTTTGGGCAAGAAGAAGAGACTTATAACATTGTTGCTGCTCATGGGTATTTTGGTCGG 19446 | || | ||||| ||||| ||||| || || || || | ||||| |||||||| | Sbjct 615 AGATTCGATCAAGAGGAAGAAACTTAGAATATCGTAGCCGATCATGCTTATTTTGGCTGA 556 Query 19447 CTTATTTTCCAGTA 19460 | || ||||| || Sbjct 555 TTGATCTTCCAATA 542 >seq31657 Length=14304 Score = 100 bits (110), Expect = 8e-17 Identities = 110/147 (75%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 19126 GTTGCCGCAGCCTCTGCGGTCTTCCTTGTCTATCCATTTGGTCAAGGTTCCTTTAGCGAC 19185 ||||| || || | || || ||| | |||| ||| | |||||||| ||| || Sbjct 282 GTTGCAGCTGCTACCGCAGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGAT 341 Query 19186 GCTATGCCTTTGGGTATTAGTGGTACGTTCAACTACATGCTTGTATTCCAGGCTGAACAT 19245 | ||||||| | || || |||||| ||||| | |||| || |||||||||||||||| Sbjct 342 GGTATGCCTCTAGGAATCTCTGGTACTTTCAATTTCATGATTVTATTCCAGGCTGAACAC 401 Query 19246 AACATCCTCATGCACCCGTTCCACATG 19272 |||||||| |||||||| || |||||| Sbjct 402 AACATCCTTATGCACCCATTTCACATG 428 >seq25757 Length=3733 Score = 98.7 bits (108), Expect = 3e-16 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 19552 ATGGCATTCAACTTGAATGGCTTTAACTTTAACCAGTCCCTTCTTGACAACAATGGTCGT 19611 ||||| |||||| | ||||| || || || || || || | |||||| | ||||| Sbjct 3563 ATGGCTTTCAACCTAAATGGTTTCAATTTCAATCAATCTGTAGTTGACAGTCAGAGTCGT 3622 Query 19612 GTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAACCTCGGCTTTGAGGTAATGCAC 19671 || ||| | |||||| |||| || | ||||||||||| || | || || ||||| Sbjct 3623 GTAATTAACACTTGGACTGATATATATATACGTGCTAACCTTGGTATGGAAGTTATGCAT 3682 Query 19672 GAACGTAATGCTCATAACTTCCCACTTGA 19700 ||||||||||||||||||||||| || || Sbjct 3683 GAACGTAATGCTCATAACTTCCCTCTAGA 3711 >seq20218 Length=9351 Score = 98.7 bits (108), Expect = 3e-16 Identities = 81/99 (82%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 19602 CAATGGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAACCTCGGCTTTGA 19661 ||| |||||||| ||| | ||||||| ||| || |||| ||||||||||| || | || Sbjct 2103 CAAGGGTCGTGTAATTAACACTTGGGTTGATATCATCAACCGTGCTAACCTTGGTATGGA 2162 Query 19662 GGTAATGCACGAACGTAATGCTCATAACTTCCCACTTGA 19700 || ||||| ||||||||||||||||||||||| || || Sbjct 2163 AGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGA 2201 >seq46 Length=65133 Score = 91.5 bits (100), Expect = 4e-14 Identities = 139/196 (71%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 19487 TACATTTCTTTTTGGCTGCTTGGCCTGTGGTTGGCATTTGGTTTGCCGCCCTTGGGGTAA 19546 |||| ||||| ||||||||||| || || || || |||||| |||| | || | | Sbjct 51962 TACACTTCTTCCGAGCTGCTTGGCCCGTAGTAGGTATCTGGTTTACCGCTTTAGGTATCA 52021 Query 19547 GCACCATGGCATTCAACTTGAATGGCTTTAACTTTAACCAGTCCCTTCTTGACAACAATG 19606 || | |||| |||| | | ||||| || || || ||||| || | |||| | | Sbjct 52022 GCGCTATGGGTTTCACCCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAGT 52081 Query 19607 GTCGTGTCATTGATACTTGGGCTGACAT---TC-TCAATCGTGCTAACCTCGGCTTTGAG 19662 ||| ||| ||| | |||||||| || || || |||| ||||||||||| || | || Sbjct 52082 GTCATGTAATTAACACTTGGGCCGATATGTATCATCAACCGTGCTAACCTTGGTATGGAA 52141 Query 19663 GTAATGCACGAACGTA 19678 || ||||| ||||||| Sbjct 52142 GTTATGCATGAACGTA 52157 >seq18686 Length=60695 Score = 89.7 bits (98), Expect = 1e-13 Identities = 81/102 (79%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 18825 TGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGCATCCGCGAGCCTGTTGCAGGCAG 18884 ||||||||||||||| |||| |||||||||||||| || || || |||||| |||| Sbjct 6049 TGCCTTCATTGCTGCTCCTCTAGTAGACATTGATGGTATTCGTGAACCTGTTTCAGGGTC 5990 Query 18885 TCTTCTTTATGGAAACAACATCATATCGGGAGCCGTCGTTCC 18926 ||| ||| | ||||||||||| || || || |||| |||| Sbjct 5989 TCTACTTAACGGAAACAACATTATTTCCGGTTCCGTTATTCC 5948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141076742655420