Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21]
42,990 sequences; 724,284,658 total letters
Query= NC_025960.1
Length=148981
Score E
Sequences producing significant alignments: (Bits) Value
seq545 89.7 5e-13
seq30006 86.0 6e-12
>seq545
Length=31085
Score = 89.7 bits (98), Expect = 5e-13
Identities = 136/194 (70%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989
|||||||| || ||||| ||||| | ||| || ||| || ||||| ||||| | |
Sbjct 3746 GACTCTTTCTGGATGTTATAGTCTGCAAGGGTGCGACCATCCTCAAGCTGCTTACCAGCA 3687
Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049
|||| || | |||||||||||| || || ||||| || || || ||| |||||
Sbjct 3686 AAGATGAGCCTCTGTTGATCTGGTGGGATCCCTTCCTTGTCCTGTATCTTTGCTTTCACA 3627
Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109
| || | |||||| | |||||| || | || | || || ||||||||||| ||
Sbjct 3626 TTGTCAATAGTATCAGAGCTCTCCACCTCCAATGTGATTGTCTTCCCAGTCAGAGTCTTC 3567
Query 132110 ATGAAAATCTGCAT 132123
| || ||||||||
Sbjct 3566 ACAAAGATCTGCAT 3553
Score = 84.2 bits (92), Expect = 2e-11
Identities = 150/220 (68%), Gaps = 0/220 (0%)
Strand=Plus/Minus
Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964
||| ||||| |||| ||| | ||||||| || || ||||||||||| | || |
Sbjct 3315 CAAACGCAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCAAGAGTCCT 3256
Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024
| || || || |||||||| | | |||| | ||||||||| ||||| || || || ||
Sbjct 3255 CCCRTCCTCAAGTTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGGAATACCCTC 3196
Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084
|| || ||| ||| ||||| | || | ||||| | ||| || || | ||
Sbjct 3195 CTTGTCTTGAATCTTTGCTTTCACATTGTCAATGGTATCTGAACTCTCAACCTCCAATGT 3136
Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124
| || || ||||||| ||| || | ||||| ||||||
Sbjct 3135 AATTGTCTTCCCAGTCAAAGTCTTGACAAAAATTTGCATG 3096
Score = 82.4 bits (90), Expect = 7e-11
Identities = 149/219 (68%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964
||| ||||| |||| ||| | ||||||| || || ||||||||||| | || |
Sbjct 3543 CAAACGCAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCAAGAGTCCT 3484
Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024
| || || || |||||||| | | |||| | ||||||||| ||||| || || || ||
Sbjct 3483 CCCRTCCTCAAGWTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGGAATACCCTC 3424
Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084
|| || ||| ||| ||||| | || | ||||| | ||| || || | ||
Sbjct 3423 CTTGTCTTGAATCTTTGCTTTCACATTGTCAATGGTATCTGAACTCTCAACCTCCAATGT 3364
Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
| || || ||||||| ||| || | || ||||||||
Sbjct 3363 GATTGTCTTCCCAGTCAAAGTCTTCACAAAGATCTGCAT 3325
>seq30006
Length=21699
Score = 86.0 bits (94), Expect = 6e-12
Identities = 135/191 (71%), Gaps = 2/191 (1%)
Strand=Plus/Minus
Query 131934 CTTTTTGAATGTTGTAGTC-GCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAATAG 131992
|||| ||||||||||| || ||| | ||||| |||||||||||| || |||| ||
Sbjct 12893 CTTTCTGAATGTTGTAATCAGCT-AGAGTACGTCCATCTTCGAGCTGCTTTCCGGCGAAG 12835
Query 131993 ATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAACTGT 132052
|| | ||||| || || || || || ||||| || || ||| || ||| | |
Sbjct 12834 ATCAATCGCTGCTGGTCCGGTGGAATACCTTCCTTGTCTTGAATCTTAGCTTTGACATTG 12775
Query 132053 TCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTATG 132112
|| | ||| ||| | | || ||||| | ||| | ||| || || || |||||||| | |
Sbjct 12774 TCAATAGTGTCGCTTGATTCAACTTCAAGCGTGATCGTCTTCCCCGTAAGAGTTTTCACG 12715
Query 132113 AAAATCTGCAT 132123
|| ||||||||
Sbjct 12714 AAGATCTGCAT 12704
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476355081056400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |