Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21] 42,990 sequences; 724,284,658 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq545 89.7 5e-13 seq30006 86.0 6e-12 >seq545 Length=31085 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 |||||||| || ||||| ||||| | ||| || ||| || ||||| ||||| | | Sbjct 3746 GACTCTTTCTGGATGTTATAGTCTGCAAGGGTGCGACCATCCTCAAGCTGCTTACCAGCA 3687 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || | |||||||||||| || || ||||| || || || ||| ||||| Sbjct 3686 AAGATGAGCCTCTGTTGATCTGGTGGGATCCCTTCCTTGTCCTGTATCTTTGCTTTCACA 3627 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | |||||| | |||||| || | || | || || ||||||||||| || Sbjct 3626 TTGTCAATAGTATCAGAGCTCTCCACCTCCAATGTGATTGTCTTCCCAGTCAGAGTCTTC 3567 Query 132110 ATGAAAATCTGCAT 132123 | || |||||||| Sbjct 3566 ACAAAGATCTGCAT 3553 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/220 (68%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 ||| ||||| |||| ||| | ||||||| || || ||||||||||| | || | Sbjct 3315 CAAACGCAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCAAGAGTCCT 3256 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 | || || || |||||||| | | |||| | ||||||||| ||||| || || || || Sbjct 3255 CCCRTCCTCAAGTTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGGAATACCCTC 3196 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 || || ||| ||| ||||| | || | ||||| | ||| || || | || Sbjct 3195 CTTGTCTTGAATCTTTGCTTTCACATTGTCAATGGTATCTGAACTCTCAACCTCCAATGT 3136 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 | || || ||||||| ||| || | ||||| |||||| Sbjct 3135 AATTGTCTTCCCAGTCAAAGTCTTGACAAAAATTTGCATG 3096 Score = 82.4 bits (90), Expect = 7e-11 Identities = 149/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 ||| ||||| |||| ||| | ||||||| || || ||||||||||| | || | Sbjct 3543 CAAACGCAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCAAGAGTCCT 3484 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 | || || || |||||||| | | |||| | ||||||||| ||||| || || || || Sbjct 3483 CCCRTCCTCAAGWTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGGAATACCCTC 3424 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 || || ||| ||| ||||| | || | ||||| | ||| || || | || Sbjct 3423 CTTGTCTTGAATCTTTGCTTTCACATTGTCAATGGTATCTGAACTCTCAACCTCCAATGT 3364 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 | || || ||||||| ||| || | || |||||||| Sbjct 3363 GATTGTCTTCCCAGTCAAAGTCTTCACAAAGATCTGCAT 3325 >seq30006 Length=21699 Score = 86.0 bits (94), Expect = 6e-12 Identities = 135/191 (71%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 131934 CTTTTTGAATGTTGTAGTC-GCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAATAG 131992 |||| ||||||||||| || ||| | ||||| |||||||||||| || |||| || Sbjct 12893 CTTTCTGAATGTTGTAATCAGCT-AGAGTACGTCCATCTTCGAGCTGCTTTCCGGCGAAG 12835 Query 131993 ATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAACTGT 132052 || | ||||| || || || || || ||||| || || ||| || ||| | | Sbjct 12834 ATCAATCGCTGCTGGTCCGGTGGAATACCTTCCTTGTCTTGAATCTTAGCTTTGACATTG 12775 Query 132053 TCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTATG 132112 || | ||| ||| | | || ||||| | ||| | ||| || || || |||||||| | | Sbjct 12774 TCAATAGTGTCGCTTGATTCAACTTCAAGCGTGATCGTCTTCCCCGTAAGAGTTTTCACG 12715 Query 132113 AAAATCTGCAT 132123 || |||||||| Sbjct 12714 AAGATCTGCAT 12704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476355081056400