Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21]
42,990 sequences; 724,284,658 total letters
Query= NC_026430.1
Length=125767
Score E
Sequences producing significant alignments: (Bits) Value
seq3956 98.7 8e-16
seq796 87.8 1e-12
>seq3956
Length=148667
Score = 98.7 bits (108), Expect = 8e-16
Identities = 157/225 (70%), Gaps = 8/225 (4%)
Strand=Plus/Minus
Query 106254 TTAAAAATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGA----AAC 106309
||| | |||||||| ||||||||||| | | ||| ||||||||||| |||| ||
Sbjct 117988 TTACAGATGCAAATCTTTGTTAAAACTCTCATTGGAAAGACCATTACTCTGGATGTGAAG 117929
Query 106310 AGAACCCGGCGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCC 106369
|| ||| | || ||| | | || ||| ||| |||| ||||||||||| | ||
Sbjct 117928 AGTACCA----ACTCCATTGACAATGTTAAAGCAAAGATTGAAGACAAAGAAGGAATTCC 117873
Query 106370 CGTTGATCAACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGG 106429
| ||||||||||| | | |||| || |||||||| | ||| | | || | |
Sbjct 117872 CTCAGATCAACAAAGATTAGTATATGGTGGAAAACAATTTAAGGATGATCATACACTTGC 117813
Query 106430 CGATTACAACATACAAAAAGAATCTACACTACATTTAGTATTGAG 106474
|||||||| || ||||| || |||||| | ||| | || |||||
Sbjct 117812 TGATTACAATATTCAAAAGGAGTCTACAATTCATCTTGTCTTGAG 117768
>seq796
Length=44438
Score = 87.8 bits (96), Expect = 1e-12
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318
||||||||| || || || || |||||||||||||| |||||| | || ||| |
Sbjct 19744 AATGCAAATCTTCGTGAAGACCTTGACTGGCAAGACTATTACCCTTGAGGTGGAAAGCTC 19803
Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378
||| | ||| | | || || || ||| |||||||| || | || || ||
Sbjct 19804 CGACACCATTGACAACGTAAAGGCCAAGATTCAGGACAAAGAGGGTATCCCACCAGACCA 19863
Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAA 106438
|||||| | |||| ||| ||||| || || |||||| | || | | |||||||||
Sbjct 19864 GCAAAGGTTGATTTTTGCTGGCAAGCAGTTGGAAGATGGAAGGACATTAGCCGATTACAA 19923
Query 106439 CATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486
|| || || ||||| || || ||| | || |||||| | | |||||
Sbjct 19924 TATTCAGAAGGAATCAACCCTTCATCTTGTGTTGAGGCTCAGGGGAGG 19971
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 402118803177920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |