Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21] 42,990 sequences; 724,284,658 total letters Query= NC_026430.1 Length=125767 Score E Sequences producing significant alignments: (Bits) Value seq3956 98.7 8e-16 seq796 87.8 1e-12 >seq3956 Length=148667 Score = 98.7 bits (108), Expect = 8e-16 Identities = 157/225 (70%), Gaps = 8/225 (4%) Strand=Plus/Minus Query 106254 TTAAAAATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGA----AAC 106309 ||| | |||||||| ||||||||||| | | ||| ||||||||||| |||| || Sbjct 117988 TTACAGATGCAAATCTTTGTTAAAACTCTCATTGGAAAGACCATTACTCTGGATGTGAAG 117929 Query 106310 AGAACCCGGCGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCC 106369 || ||| | || ||| | | || ||| ||| |||| ||||||||||| | || Sbjct 117928 AGTACCA----ACTCCATTGACAATGTTAAAGCAAAGATTGAAGACAAAGAAGGAATTCC 117873 Query 106370 CGTTGATCAACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGG 106429 | ||||||||||| | | |||| || |||||||| | ||| | | || | | Sbjct 117872 CTCAGATCAACAAAGATTAGTATATGGTGGAAAACAATTTAAGGATGATCATACACTTGC 117813 Query 106430 CGATTACAACATACAAAAAGAATCTACACTACATTTAGTATTGAG 106474 |||||||| || ||||| || |||||| | ||| | || ||||| Sbjct 117812 TGATTACAATATTCAAAAGGAGTCTACAATTCATCTTGTCTTGAG 117768 >seq796 Length=44438 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318 ||||||||| || || || || |||||||||||||| |||||| | || ||| | Sbjct 19744 AATGCAAATCTTCGTGAAGACCTTGACTGGCAAGACTATTACCCTTGAGGTGGAAAGCTC 19803 Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378 ||| | ||| | | || || || ||| |||||||| || | || || || Sbjct 19804 CGACACCATTGACAACGTAAAGGCCAAGATTCAGGACAAAGAGGGTATCCCACCAGACCA 19863 Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAA 106438 |||||| | |||| ||| ||||| || || |||||| | || | | ||||||||| Sbjct 19864 GCAAAGGTTGATTTTTGCTGGCAAGCAGTTGGAAGATGGAAGGACATTAGCCGATTACAA 19923 Query 106439 CATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 || || || ||||| || || ||| | || |||||| | | ||||| Sbjct 19924 TATTCAGAAGGAATCAACCCTTCATCTTGTGTTGAGGCTCAGGGGAGG 19971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 402118803177920