Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21]
42,990 sequences; 724,284,658 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq728 118 2e-20
>seq728
Length=46982
Score = 118 bits (130), Expect = 2e-20
Identities = 347/525 (66%), Gaps = 16/525 (3%)
Strand=Plus/Minus
Query 1455753 TGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTT 1455812
||||||| || | || | | ||| ||||||||||| ||| || ||| ||| || ||
Sbjct 2822 TGTTCCCAATTCAGTATCCACAGATTTGGGAAATGTA-CAAGAAAGCCATGGCATCTTTC 2764
Query 1455813 TGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCCACTGGGTGTCGCTGAGCGAC 1455872
||||| | || || ||||| ||| | |||| || ||||||| || | |
Sbjct 2763 TGGACGGTAGAAGAAGTCGATCTCTCCACCGATACTCGTCACTGGGAAAACCTAACATCC 2704
Query 1455873 GACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGT 1455932
| || | |||||||||| || || || ||||||||| || ||| || ||||||||
Sbjct 2703 GGTGAAAGGCATTTCATCACTCATGTTCTTGCCTTTTTT-GCTGCCTCAGACGGCATCGT 2645
Query 1455933 GGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCA-ATTGCCAGAGGCACGTTTGT 1455991
|||||||| || || | || |||||||| ||||| ||||| |||| ||| |
Sbjct 2644 TTTAGAGAACCTCGCTGGAAGGTTCATGAAAGACGTCCAGGTTGCC-GAGGTTCGTGCTT 2586
Query 1455992 TTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCG 1456051
| || |||||||| |||||||| || || ||||| || || | ||| | ||| | |
Sbjct 2585 TCTATGGGTTCCAAATCGCCATTGAGAATATCCATTCCGAGATGTACAGTTTGCTGTTGG 2526
Query 1456052 ACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGC 1456111
| | ||| ||||||| | | ||| ||| | | | || || || || || || | |
Sbjct 2525 AGTCGTACATCAAGGATTCTGACGAAAAGAGCAAATTGTTCCGTGCGATTGAGACAATCC 2466
Query 1456112 CGTCGGTGAGGAAA--AAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGA 1456169
| | ||| |||| ||||| | ||||| | |||||| || || |||
Sbjct 2465 CTT--GTGTTGAAAAGAAGGCGAAATGGGCCCTTCGTTGGATC------GATGGGTCCGA 2414
Query 1456170 CA-CTTTGCCGAGCGGCTCGTCGGCTTTGCC-GCGTCGAGGGCATCTTTTTCTCGGGCAG 1456227
| ||| || ||||| | || | |||||| | || || || || || ||| || ||
Sbjct 2413 AACCTTCGCGGAGCGTTTGGTGGCTTTTGCCTGTGTTGAAGGGATTTTCTTCAGCGGAAG 2354
Query 1456228 TTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGG 1456272
||||| | || |||||| | || || || || | ||||| ||
Sbjct 2353 CTTCTGTTCGATATTTTGGTTGAAAAAACGGGGGTTAATGCCTGG 2309
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7173664735484380
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |