Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21] 42,990 sequences; 724,284,658 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq728 118 2e-20 >seq728 Length=46982 Score = 118 bits (130), Expect = 2e-20 Identities = 347/525 (66%), Gaps = 16/525 (3%) Strand=Plus/Minus Query 1455753 TGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTT 1455812 ||||||| || | || | | ||| ||||||||||| ||| || ||| ||| || || Sbjct 2822 TGTTCCCAATTCAGTATCCACAGATTTGGGAAATGTA-CAAGAAAGCCATGGCATCTTTC 2764 Query 1455813 TGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCCACTGGGTGTCGCTGAGCGAC 1455872 ||||| | || || ||||| ||| | |||| || ||||||| || | | Sbjct 2763 TGGACGGTAGAAGAAGTCGATCTCTCCACCGATACTCGTCACTGGGAAAACCTAACATCC 2704 Query 1455873 GACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGT 1455932 | || | |||||||||| || || || ||||||||| || ||| || |||||||| Sbjct 2703 GGTGAAAGGCATTTCATCACTCATGTTCTTGCCTTTTTT-GCTGCCTCAGACGGCATCGT 2645 Query 1455933 GGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCA-ATTGCCAGAGGCACGTTTGT 1455991 |||||||| || || | || |||||||| ||||| ||||| |||| ||| | Sbjct 2644 TTTAGAGAACCTCGCTGGAAGGTTCATGAAAGACGTCCAGGTTGCC-GAGGTTCGTGCTT 2586 Query 1455992 TTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCG 1456051 | || |||||||| |||||||| || || ||||| || || | ||| | ||| | | Sbjct 2585 TCTATGGGTTCCAAATCGCCATTGAGAATATCCATTCCGAGATGTACAGTTTGCTGTTGG 2526 Query 1456052 ACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGC 1456111 | | ||| ||||||| | | ||| ||| | | | || || || || || || | | Sbjct 2525 AGTCGTACATCAAGGATTCTGACGAAAAGAGCAAATTGTTCCGTGCGATTGAGACAATCC 2466 Query 1456112 CGTCGGTGAGGAAA--AAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGA 1456169 | | ||| |||| ||||| | ||||| | |||||| || || ||| Sbjct 2465 CTT--GTGTTGAAAAGAAGGCGAAATGGGCCCTTCGTTGGATC------GATGGGTCCGA 2414 Query 1456170 CA-CTTTGCCGAGCGGCTCGTCGGCTTTGCC-GCGTCGAGGGCATCTTTTTCTCGGGCAG 1456227 | ||| || ||||| | || | |||||| | || || || || || ||| || || Sbjct 2413 AACCTTCGCGGAGCGTTTGGTGGCTTTTGCCTGTGTTGAAGGGATTTTCTTCAGCGGAAG 2354 Query 1456228 TTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGG 1456272 ||||| | || |||||| | || || || || | ||||| || Sbjct 2353 CTTCTGTTCGATATTTTGGTTGAAAAAACGGGGGTTAATGCCTGG 2309 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7173664735484380