Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21]
42,990 sequences; 724,284,658 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq23166 122 1e-22
seq30480 107 3e-18
>seq23166
Length=18651
Score = 122 bits (134), Expect = 1e-22
Identities = 160/222 (72%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810
||||| || || | |||| ||||||| |||| | || | |||||||||||||| |||
Sbjct 8359 CCTCCTTGGTCAACATATCGAGCAGTGTCATTAAACACACGTAGCATCGGAATAATTCCA 8418
Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870
|| ||| | |||||||||||| ||||||||| || | | |||||||| | ||||
Sbjct 8419 TTTGATGTCCCATTTGTTCCACGAATATAACTCCCAGTGCCACGAATATTGTGCACAGAT 8478
Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930
| || |||||||| || ||| || | |||||| || | |||||||||||
Sbjct 8479 ACTCCAATTCCTCCAGCAGATTTGCTAATAACAGCACACTCCTTAAGAGTGTCATATATG 8538
Query 69931 CCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972
||||| || ||||| ||| ||||| | || || ||||||
Sbjct 8539 CCCTCAATACTATCGTCTTTCATGCATATCAGGAAGCAGCTA 8580
Score = 100 bits (110), Expect = 4e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 69990 AGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATT 70049
|||||| |||||||| | || ||||| || |||||||||||| | | ||| | || ||
Sbjct 8680 AGTTCCAGCATTAAAAAGAGTTGGAGAAGCATGAGTGAACCATCTCTGAGACATCAAATG 8739
Query 70050 GTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAA 70109
|| || | || || ||||| ||||| || ||| || |||| | ||| | |||||
Sbjct 8740 ATAAGTCTTGATGGCAGATTCAATATCATTCTTATGTATCCCTACAGAGACTCTCATCAG 8799
Query 70110 CATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAG 70169
||| || || || | |||||| ||| || || || || ||||| ||| |||||
Sbjct 8800 CATGTGTTGTGGCCTTTCTACAACTTTCCCATCAATCTTTAAGAGGTAAGATCGCTCCAG 8859
Query 70170 AGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217
||||| || ||||| || | || |||||| || || || || ||
Sbjct 8860 GGTTTTGAAACCAAAGTAATCATAGTCAAAGTCCCTGTCATATATGAT 8907
>seq30480
Length=20585
Score = 107 bits (118), Expect = 3e-18
Identities = 157/222 (71%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810
|| || ||||| | ||||||||||| | |||| | || | |||||| |||| ||| |||
Sbjct 15055 CCCCCTTGATCAACATATCTGGCAGTATCATTAAACACACGCAGCATAGGAACAATCCCA 14996
Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870
|| ||| | || ||||||||| ||||||||| || | || || || || | ||||
Sbjct 14995 TTTGATGTTCCGTTTGTTCCACGAATATAACTCCCAGTAGCACGTATGTTGTGCACAGAT 14936
Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930
| || ||||| || || ||| || | |||||| | | || ||||||||
Sbjct 14935 ACGCCAATTCCCCCAGCTGATTTGCTAATAACAGCACATTCCGTAAGAGTATCATATATG 14876
Query 69931 CCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972
||||| |||||||||||| ||||| | || || ||||||
Sbjct 14875 CCCTCAATGCTATCATCTTTCATGCATATCAGGAAGCAGCTA 14834
Score = 100 bits (110), Expect = 4e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 69990 AGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATT 70049
||| || |||||||||| ||| |||||||| ||||||||||| || ||| | || ||
Sbjct 14637 AGTGCCAGCATTAAATAGTGTTGGAGATGCATGAGTGAACCAGCGTTGAGACATCAAATG 14578
Query 70050 GTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAA 70109
||||| | || | ||||| |||||| | || ||||| | | || | |||||
Sbjct 14577 ATATGTCTTGATGACAGATTCAATATCCTCTTTGTGGATTCCAACAGATACTCTCATCAG 14518
Query 70110 CATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAG 70169
|||||| || || | ||| || | || | || || || ||||| || |||| ||
Sbjct 14517 CATATGTTGTGGCCTTTCCACAATCTTTCCCTGAATCTTTAAAAGGTAAGACCTTTCAAG 14458
Query 70170 AGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217
||||| || ||||| || | || ||||||||| ||||| || ||
Sbjct 14457 GGTTTTGAAACCAAAGTAATCATAGTCAAAGTCTCTGTCGTATATGAT 14410
Score = 95.1 bits (104), Expect = 2e-14
Identities = 126/173 (73%), Gaps = 4/173 (2%)
Strand=Plus/Minus
Query 69489 CTCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCC 69548
|||||||||||||| ||| || ||| || || || || ||||| ||| |||||||
Sbjct 15568 CTCTTTTTCATATTTTGTGTACAGCTTCTCAAAATCTTCACCCCAGCAATCTGCCAATCC 15509
Query 69549 AGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTT--AACTCGTTTCATA 69606
|||| ||||||||||| | ||| ||||| | ||| | ||| |||| || ||||
Sbjct 15508 AGGAGCCTCATTTGGACAAAACAAAGACCATATCCCAT--TGCTTTGGACTCTTTGCATA 15451
Query 69607 AATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTC 69659
|| ||||| || | ||||||||| ||| ||||||| | | ||| |||||
Sbjct 15450 AAAAGATCTGGCACCCAAAGAGCATAAAAAAGATCTCGTGCCCGATTCTCTTC 15398
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686539672383600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |