Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21] 42,990 sequences; 724,284,658 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq23166 122 1e-22 seq30480 107 3e-18 >seq23166 Length=18651 Score = 122 bits (134), Expect = 1e-22 Identities = 160/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810 ||||| || || | |||| ||||||| |||| | || | |||||||||||||| ||| Sbjct 8359 CCTCCTTGGTCAACATATCGAGCAGTGTCATTAAACACACGTAGCATCGGAATAATTCCA 8418 Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870 || ||| | |||||||||||| ||||||||| || | | |||||||| | |||| Sbjct 8419 TTTGATGTCCCATTTGTTCCACGAATATAACTCCCAGTGCCACGAATATTGTGCACAGAT 8478 Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930 | || |||||||| || ||| || | |||||| || | ||||||||||| Sbjct 8479 ACTCCAATTCCTCCAGCAGATTTGCTAATAACAGCACACTCCTTAAGAGTGTCATATATG 8538 Query 69931 CCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 ||||| || ||||| ||| ||||| | || || |||||| Sbjct 8539 CCCTCAATACTATCGTCTTTCATGCATATCAGGAAGCAGCTA 8580 Score = 100 bits (110), Expect = 4e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 69990 AGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATT 70049 |||||| |||||||| | || ||||| || |||||||||||| | | ||| | || || Sbjct 8680 AGTTCCAGCATTAAAAAGAGTTGGAGAAGCATGAGTGAACCATCTCTGAGACATCAAATG 8739 Query 70050 GTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAA 70109 || || | || || ||||| ||||| || ||| || |||| | ||| | ||||| Sbjct 8740 ATAAGTCTTGATGGCAGATTCAATATCATTCTTATGTATCCCTACAGAGACTCTCATCAG 8799 Query 70110 CATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAG 70169 ||| || || || | |||||| ||| || || || || ||||| ||| ||||| Sbjct 8800 CATGTGTTGTGGCCTTTCTACAACTTTCCCATCAATCTTTAAGAGGTAAGATCGCTCCAG 8859 Query 70170 AGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217 ||||| || ||||| || | || |||||| || || || || || Sbjct 8860 GGTTTTGAAACCAAAGTAATCATAGTCAAAGTCCCTGTCATATATGAT 8907 >seq30480 Length=20585 Score = 107 bits (118), Expect = 3e-18 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810 || || ||||| | ||||||||||| | |||| | || | |||||| |||| ||| ||| Sbjct 15055 CCCCCTTGATCAACATATCTGGCAGTATCATTAAACACACGCAGCATAGGAACAATCCCA 14996 Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870 || ||| | || ||||||||| ||||||||| || | || || || || | |||| Sbjct 14995 TTTGATGTTCCGTTTGTTCCACGAATATAACTCCCAGTAGCACGTATGTTGTGCACAGAT 14936 Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930 | || ||||| || || ||| || | |||||| | | || |||||||| Sbjct 14935 ACGCCAATTCCCCCAGCTGATTTGCTAATAACAGCACATTCCGTAAGAGTATCATATATG 14876 Query 69931 CCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 ||||| |||||||||||| ||||| | || || |||||| Sbjct 14875 CCCTCAATGCTATCATCTTTCATGCATATCAGGAAGCAGCTA 14834 Score = 100 bits (110), Expect = 4e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 69990 AGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATT 70049 ||| || |||||||||| ||| |||||||| ||||||||||| || ||| | || || Sbjct 14637 AGTGCCAGCATTAAATAGTGTTGGAGATGCATGAGTGAACCAGCGTTGAGACATCAAATG 14578 Query 70050 GTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAA 70109 ||||| | || | ||||| |||||| | || ||||| | | || | ||||| Sbjct 14577 ATATGTCTTGATGACAGATTCAATATCCTCTTTGTGGATTCCAACAGATACTCTCATCAG 14518 Query 70110 CATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAG 70169 |||||| || || | ||| || | || | || || || ||||| || |||| || Sbjct 14517 CATATGTTGTGGCCTTTCCACAATCTTTCCCTGAATCTTTAAAAGGTAAGACCTTTCAAG 14458 Query 70170 AGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217 ||||| || ||||| || | || ||||||||| ||||| || || Sbjct 14457 GGTTTTGAAACCAAAGTAATCATAGTCAAAGTCTCTGTCGTATATGAT 14410 Score = 95.1 bits (104), Expect = 2e-14 Identities = 126/173 (73%), Gaps = 4/173 (2%) Strand=Plus/Minus Query 69489 CTCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCC 69548 |||||||||||||| ||| || ||| || || || || ||||| ||| ||||||| Sbjct 15568 CTCTTTTTCATATTTTGTGTACAGCTTCTCAAAATCTTCACCCCAGCAATCTGCCAATCC 15509 Query 69549 AGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTT--AACTCGTTTCATA 69606 |||| ||||||||||| | ||| ||||| | ||| | ||| |||| || |||| Sbjct 15508 AGGAGCCTCATTTGGACAAAACAAAGACCATATCCCAT--TGCTTTGGACTCTTTGCATA 15451 Query 69607 AATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTC 69659 || ||||| || | ||||||||| ||| ||||||| | | ||| ||||| Sbjct 15450 AAAAGATCTGGCACCCAAAGAGCATAAAAAAGATCTCGTGCCCGATTCTCTTC 15398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686539672383600