Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21] 42,990 sequences; 724,284,658 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq728 161 8e-35 >seq728 Length=46982 Score = 161 bits (178), Expect = 8e-35 Identities = 386/580 (67%), Gaps = 4/580 (1%) Strand=Plus/Minus Query 43707 TGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTT 43766 |||| |||||||| |||| | || ||| |||||||||| ||||| ||| || || | Sbjct 2822 TGTTCCCAATTCAGTATCCACAGATTTGGGAAATGTACAAGAAAGCCATGGCATCTTTCT 2763 Query 43767 GGACAGCAGAAGAAGTTGATTTGACTAAAGA--CTTAGCACATTGGATTGCATTAAAACC 43824 |||| | ||||||||| ||| | | | || || ||| | ||| | | | | || Sbjct 2762 GGACGGTAGAAGAAGTCGATCTCTCCACCGATACTCGTCAC-TGGGAAAACCTAACATCC 2704 Query 43825 ACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGT 43884 |||| ||||| || || ||| | || ||||||||||| ||||| || || Sbjct 2703 GGT-GAAAGGCATTTCATCACTCATGTTCTTGCCTTTTTTGCTGCCTCAGACGGCATCGT 2645 Query 43885 CAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTT 43944 || || | | | | |||| | |||| || || | | || | || ||| Sbjct 2644 TTTAGAGAACCTCGCTGGAAGGTTCATGAAAGACGTCCAGGTTGCCGAGGTTCGTGCTTT 2585 Query 43945 TTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGA 44004 |||||||| ||||| ||||| || ||||| ||||| || ||||||||| | ||| | || Sbjct 2584 CTATGGGTTCCAAATCGCCATTGAGAATATCCATTCCGAGATGTACAGTTTGCTGTTGGA 2525 Query 44005 TACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTACC 44064 |||||||||| ||| |||| ||| |||||| |||||| || ||| | || Sbjct 2524 GTCGTACATCAAGGATTCTGACGAAAAGAGCAAATTGTTCCGTGCGATTGAGACAATCCC 2465 Query 44065 TGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTTTTGG 44124 | || || | || || | ||||||||| ||||| || || | || | Sbjct 2464 TTGTGTTGAAAAGAAGGCGAAATGGGCCCTTCGTTGGATCGATGGGTCCGAAACCTTCGC 2405 Query 44125 AGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGC 44184 || || | || || ||||| ||| ||||| |||||||| ||| || | Sbjct 2404 GGAGCGTTTGGTGGCTTTTGCCTGTGTTGAAGGGATTTTCTTCAGCGGAAGCTTCTGTTC 2345 Query 44185 CATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAAT 44244 ||||||||||| || ||||| || || |||||||| || || || |||||||||||||| Sbjct 2344 GATATTTTGGTTGAAAAAACGGGGGTTAATGCCTGGATTAACCTTCTCAAATGAGTTAAT 2285 Query 44245 AAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTG 44284 | || ||||| || || || |||||||| || ||| Sbjct 2284 TTCAAGAGACGAAGGTTTGCACTGTGATTTTGCGTGTTTG 2245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397247756654950