Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21]
42,990 sequences; 724,284,658 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq728 161 8e-35
>seq728
Length=46982
Score = 161 bits (178), Expect = 8e-35
Identities = 386/580 (67%), Gaps = 4/580 (1%)
Strand=Plus/Minus
Query 43707 TGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTT 43766
|||| |||||||| |||| | || ||| |||||||||| ||||| ||| || || |
Sbjct 2822 TGTTCCCAATTCAGTATCCACAGATTTGGGAAATGTACAAGAAAGCCATGGCATCTTTCT 2763
Query 43767 GGACAGCAGAAGAAGTTGATTTGACTAAAGA--CTTAGCACATTGGATTGCATTAAAACC 43824
|||| | ||||||||| ||| | | | || || ||| | ||| | | | | ||
Sbjct 2762 GGACGGTAGAAGAAGTCGATCTCTCCACCGATACTCGTCAC-TGGGAAAACCTAACATCC 2704
Query 43825 ACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGT 43884
|||| ||||| || || ||| | || ||||||||||| ||||| || ||
Sbjct 2703 GGT-GAAAGGCATTTCATCACTCATGTTCTTGCCTTTTTTGCTGCCTCAGACGGCATCGT 2645
Query 43885 CAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTT 43944
|| || | | | | |||| | |||| || || | | || | || |||
Sbjct 2644 TTTAGAGAACCTCGCTGGAAGGTTCATGAAAGACGTCCAGGTTGCCGAGGTTCGTGCTTT 2585
Query 43945 TTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGA 44004
|||||||| ||||| ||||| || ||||| ||||| || ||||||||| | ||| | ||
Sbjct 2584 CTATGGGTTCCAAATCGCCATTGAGAATATCCATTCCGAGATGTACAGTTTGCTGTTGGA 2525
Query 44005 TACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTACC 44064
|||||||||| ||| |||| ||| |||||| |||||| || ||| | ||
Sbjct 2524 GTCGTACATCAAGGATTCTGACGAAAAGAGCAAATTGTTCCGTGCGATTGAGACAATCCC 2465
Query 44065 TGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTTTTGG 44124
| || || | || || | ||||||||| ||||| || || | || |
Sbjct 2464 TTGTGTTGAAAAGAAGGCGAAATGGGCCCTTCGTTGGATCGATGGGTCCGAAACCTTCGC 2405
Query 44125 AGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGC 44184
|| || | || || ||||| ||| ||||| |||||||| ||| || |
Sbjct 2404 GGAGCGTTTGGTGGCTTTTGCCTGTGTTGAAGGGATTTTCTTCAGCGGAAGCTTCTGTTC 2345
Query 44185 CATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAAT 44244
||||||||||| || ||||| || || |||||||| || || || ||||||||||||||
Sbjct 2344 GATATTTTGGTTGAAAAAACGGGGGTTAATGCCTGGATTAACCTTCTCAAATGAGTTAAT 2285
Query 44245 AAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTG 44284
| || ||||| || || || |||||||| || |||
Sbjct 2284 TTCAAGAGACGAAGGTTTGCACTGTGATTTTGCGTGTTTG 2245
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397247756654950
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |