Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21]
42,990 sequences; 724,284,658 total letters
Query= NC_027923.1
Length=132831
Score E
Sequences producing significant alignments: (Bits) Value
seq30006 89.7 4e-13
seq545 89.7 4e-13
>seq30006
Length=21699
Score = 89.7 bits (98), Expect = 4e-13
Identities = 136/191 (71%), Gaps = 2/191 (1%)
Strand=Plus/Minus
Query 27058 CTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAA 27116
|||| ||||| ||||| || ||| || || | ||||||||||| || |||||| |
Sbjct 12893 CTTTCTGAATGTTGTAATCAGCTAGAGTA-CGTCCATCTTCGAGCTGCTTTCCGGCGAAG 12835
Query 27117 ATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTT 27176
|| | ||||| || ||||| || | ||| || || || ||||| ||| | |
Sbjct 12834 ATCAATCGCTGCTGGTCCGGTGGAATACCTTCCTTGTCTTGAATCTTAGCTTTGACATTG 12775
Query 27177 TCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACA 27236
|| | |||||| | | ||||||||| || || || | || ||||| |||||||||||
Sbjct 12774 TCAATAGTGTCGCTTGATTCAACTTCAAGCGTGATCGTCTTCCCCGTAAGAGTTTTCACG 12715
Query 27237 AAGATTTGCAT 27247
||||| |||||
Sbjct 12714 AAGATCTGCAT 12704
>seq545
Length=31085
Score = 89.7 bits (98), Expect = 4e-13
Identities = 140/198 (71%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 27051 GTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109
||||| |||||||| || ||||| || || |||| || | ||||| |||||||| ||
Sbjct 2381 GTAGACTCTTTTTGGATGTTGTAATCAGCAAGTGTTCGGC-CATCTTCAAGCTGTTTCCC 2323
Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169
|| | || || | ||| || || || || | ||| || || || || || |||
Sbjct 2322 AGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATACCTTCCTTGTCTTGAATTTTAGCTTT 2263
Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229
| | || | ||||||| | || || || |||||||||| || || ||||||||
Sbjct 2262 GACATTATCGATGGTGTCTGAGCTCTCGACCTCAAGAGTTATAGTCTTCCCGGTCAGAGT 2203
Query 27230 TTTCACAAAGATTTGCAT 27247
||| ||||||||||||||
Sbjct 2202 TTTAACAAAGATTTGCAT 2185
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 424711759604880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |