Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21] 42,990 sequences; 724,284,658 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq191 113 6e-20 seq15443 111 2e-19 seq30480 89.7 6e-13 seq728 89.7 6e-13 >seq191 Length=31611 Score = 113 bits (124), Expect = 6e-20 Identities = 193/280 (69%), Gaps = 10/280 (4%) Strand=Plus/Minus Query 11540 AAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGC 11599 || |||||||| || || | | |||||||| || || || |||||||||||| | Sbjct 21879 AACCCATCCATTTCAGTCAAAAGCTGATTAATAGTCTGCTCCCTCTCATCATTTCCACCT 21820 Query 11600 ATACCACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACAT 11659 | ||| |||| | |||| | ||||| ||||||||||||||||| || |||||||| Sbjct 21819 CCAAGACCTGCACCTCTTTGCCTTCCCACAGCATCAATCTCATCAATAAACACAATACAA 21760 Query 11660 GG-----TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACAC 11714 || | || ||| || | ||||| | ||| | ||| || || ||||||| Sbjct 21759 GGCGCTTTCGACTTT-----GCCTTCTCAAACAAATCCCTAACTCTAGAAGCTCCCACAC 21705 Query 11715 CAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCAC 11774 | ||||||| ||| ||||| | || || | || || ||||| ||| | |||| Sbjct 21704 CCACAAACAACTCAACAAACTCTGACGCTGCACAAGAGAAAAATGGCACACCAGCCTCAC 21645 Query 11775 CCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814 | || | |||| || | ||||||||||| |||||||| Sbjct 21644 CAGCTACTGCTCTAGCTAAAAGGGTCTTTCCAGTACCTGG 21605 >seq15443 Length=42915 Score = 111 bits (122), Expect = 2e-19 Identities = 281/420 (67%), Gaps = 8/420 (2%) Strand=Plus/Plus Query 11483 TCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAG 11542 ||||| ||||| | ||||| || ||||||| ||| | || ||||| | || || Sbjct 29446 TCAAGAATATCTGCACGATTGGTTGCCGCAACAACTATTATACCAGTATTTCCTTCGAAA 29505 Query 11543 CCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATA 11602 |||||||| || || | || ||| || | || ||||| || ||||||||| || | | Sbjct 29506 CCATCCATTTCAGTCAATAGTTGGTTCAGGGTCTGTTCCCTTTCATCATTTCCT--CCTC 29563 Query 11603 CCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATG 11660 | | |||| | | |||| || || |||||||| ||||||| || ||||| || | Sbjct 29564 CAATTCCAGTCCCTCTTTGCCGCCCAACAGCATCAATTTCATCAACAAATACAATGCAAG 29623 Query 11661 GTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAA 11720 | |||||| ||| | | || ||||| || || | ||| || |||||||||| Sbjct 29624 GAGCATTTTCCTTGGCCTTCTTGAAAAGATCACGGACTCGAGAGGCTCCAACACCAACAA 29683 Query 11721 ACATCTCCACAAAGTTTGCGGCAGAGCACTG-GATGAATGGGACATTTGATTCACCCGCG 11779 ||||||| || || | || | || | || || ||||| ||| | |||||| || Sbjct 29684 ACATCTCAACGAATTCTGAACCTGA-AATTGAGAAAAATGGAACACCCGCTTCACCAGCA 29742 Query 11780 ATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGG 11839 || || || || | ||| || || ||||| || ||| | ||||| | ||| Sbjct 29743 ATTGCCTTTGCTAGCAAGGTTTTCCCAGTACCAGGAGGACCAACAAGAAGAACACCTTTT 29802 Query 11840 GGGAT-CTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCACAATCTC 11898 || || | | | |||| | || | |||||||||||| ||| | ||| || || | ||| Sbjct 29803 GGAATACGAGCCCCCAC-TGCAGTAAATCTCTCGGGTTTCTTCAAAAATTCTACGACCTC 29861 >seq30480 Length=20585 Score = 89.7 bits (98), Expect = 6e-13 Identities = 154/224 (69%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 111941 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 112000 || || ||||| || |||||||| || || ||||| | ||| ||| ||||| | ||| Sbjct 14648 TGAGGCCTTGGAGTGCCAGCATTAAATAGTGTTGGAGATGCATGAGTGAACCAGCGTTGA 14589 Query 112001 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCG 112060 |||||| | ||||||| | |||||| ||||| || || |||||| || | | Sbjct 14588 GACATCAAATGATATGTCTTGATGACAGATTCAATATCCTCTTTGTGGATTCCAACAGAT 14529 Query 112061 ACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATAG 112120 || | ||| | ||| | ||||| |||||| | | || | | | | ||| || Sbjct 14528 ACTCTCATCAGCATATGTTGTGGCCTTTCCACAATCTTTCCCTGAATCTTTAAAAGGTAA 14469 Query 112121 CTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTC 112164 | | ||||||||||||| |||||||||| || | ||| |||| Sbjct 14468 GACCTTTCAAGGGTTTTGAAACCAAAGTAATCATAGTCAAAGTC 14425 >seq728 Length=46982 Score = 89.7 bits (98), Expect = 6e-13 Identities = 151/218 (69%), Gaps = 3/218 (1%) Strand=Plus/Plus Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 ||||| || ||| | ||| || |||| ||||| | |||||||||||| || || Sbjct 2252 GCAAAATCACAGTGCAAACCTTCGTCTCTTGAAATTAACTCATTTGAGAAGGTTAATCCA 2311 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 122778 ||||| | ||||| || ||||||||| | || | ||||| ||| |||||| || Sbjct 2312 GGCATTAACCCCCGTTTTTTCAACCAAAATATCGAACAGAAGCTTCCGCTGAAGAAAATC 2371 Query 122779 CCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAAC 122838 || || ||||| ||||| || | | || || ||||||| ||| |||| | | Sbjct 2372 CCTTCAACACAGGCAAAAGCCACCAAACGCTCCGCGAAGGTTTCGGAC---CCATCGATC 2428 Query 122839 CATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGG 122876 || | ||||||||||||||||| |||| ||| || Sbjct 2429 CAACGAAGGGCCCATTTCGCCTTCTTTTCAACACAAGG 2466 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627694511304000