Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21]
42,990 sequences; 724,284,658 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq191 113 6e-20
seq15443 111 2e-19
seq30480 89.7 6e-13
seq728 89.7 6e-13
>seq191
Length=31611
Score = 113 bits (124), Expect = 6e-20
Identities = 193/280 (69%), Gaps = 10/280 (4%)
Strand=Plus/Minus
Query 11540 AAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGC 11599
|| |||||||| || || | | |||||||| || || || |||||||||||| |
Sbjct 21879 AACCCATCCATTTCAGTCAAAAGCTGATTAATAGTCTGCTCCCTCTCATCATTTCCACCT 21820
Query 11600 ATACCACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACAT 11659
| ||| |||| | |||| | ||||| ||||||||||||||||| || ||||||||
Sbjct 21819 CCAAGACCTGCACCTCTTTGCCTTCCCACAGCATCAATCTCATCAATAAACACAATACAA 21760
Query 11660 GG-----TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACAC 11714
|| | || ||| || | ||||| | ||| | ||| || || |||||||
Sbjct 21759 GGCGCTTTCGACTTT-----GCCTTCTCAAACAAATCCCTAACTCTAGAAGCTCCCACAC 21705
Query 11715 CAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCAC 11774
| ||||||| ||| ||||| | || || | || || ||||| ||| | ||||
Sbjct 21704 CCACAAACAACTCAACAAACTCTGACGCTGCACAAGAGAAAAATGGCACACCAGCCTCAC 21645
Query 11775 CCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814
| || | |||| || | ||||||||||| ||||||||
Sbjct 21644 CAGCTACTGCTCTAGCTAAAAGGGTCTTTCCAGTACCTGG 21605
>seq15443
Length=42915
Score = 111 bits (122), Expect = 2e-19
Identities = 281/420 (67%), Gaps = 8/420 (2%)
Strand=Plus/Plus
Query 11483 TCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAG 11542
||||| ||||| | ||||| || ||||||| ||| | || ||||| | || ||
Sbjct 29446 TCAAGAATATCTGCACGATTGGTTGCCGCAACAACTATTATACCAGTATTTCCTTCGAAA 29505
Query 11543 CCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATA 11602
|||||||| || || | || ||| || | || ||||| || ||||||||| || | |
Sbjct 29506 CCATCCATTTCAGTCAATAGTTGGTTCAGGGTCTGTTCCCTTTCATCATTTCCT--CCTC 29563
Query 11603 CCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATG 11660
| | |||| | | |||| || || |||||||| ||||||| || ||||| || |
Sbjct 29564 CAATTCCAGTCCCTCTTTGCCGCCCAACAGCATCAATTTCATCAACAAATACAATGCAAG 29623
Query 11661 GTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAA 11720
| |||||| ||| | | || ||||| || || | ||| || ||||||||||
Sbjct 29624 GAGCATTTTCCTTGGCCTTCTTGAAAAGATCACGGACTCGAGAGGCTCCAACACCAACAA 29683
Query 11721 ACATCTCCACAAAGTTTGCGGCAGAGCACTG-GATGAATGGGACATTTGATTCACCCGCG 11779
||||||| || || | || | || | || || ||||| ||| | |||||| ||
Sbjct 29684 ACATCTCAACGAATTCTGAACCTGA-AATTGAGAAAAATGGAACACCCGCTTCACCAGCA 29742
Query 11780 ATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGG 11839
|| || || || | ||| || || ||||| || ||| | ||||| | |||
Sbjct 29743 ATTGCCTTTGCTAGCAAGGTTTTCCCAGTACCAGGAGGACCAACAAGAAGAACACCTTTT 29802
Query 11840 GGGAT-CTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCACAATCTC 11898
|| || | | | |||| | || | |||||||||||| ||| | ||| || || | |||
Sbjct 29803 GGAATACGAGCCCCCAC-TGCAGTAAATCTCTCGGGTTTCTTCAAAAATTCTACGACCTC 29861
>seq30480
Length=20585
Score = 89.7 bits (98), Expect = 6e-13
Identities = 154/224 (69%), Gaps = 0/224 (0%)
Strand=Plus/Minus
Query 111941 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 112000
|| || ||||| || |||||||| || || ||||| | ||| ||| ||||| | |||
Sbjct 14648 TGAGGCCTTGGAGTGCCAGCATTAAATAGTGTTGGAGATGCATGAGTGAACCAGCGTTGA 14589
Query 112001 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCG 112060
|||||| | ||||||| | |||||| ||||| || || |||||| || | |
Sbjct 14588 GACATCAAATGATATGTCTTGATGACAGATTCAATATCCTCTTTGTGGATTCCAACAGAT 14529
Query 112061 ACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATAG 112120
|| | ||| | ||| | ||||| |||||| | | || | | | | ||| ||
Sbjct 14528 ACTCTCATCAGCATATGTTGTGGCCTTTCCACAATCTTTCCCTGAATCTTTAAAAGGTAA 14469
Query 112121 CTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTC 112164
| | ||||||||||||| |||||||||| || | ||| ||||
Sbjct 14468 GACCTTTCAAGGGTTTTGAAACCAAAGTAATCATAGTCAAAGTC 14425
>seq728
Length=46982
Score = 89.7 bits (98), Expect = 6e-13
Identities = 151/218 (69%), Gaps = 3/218 (1%)
Strand=Plus/Plus
Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718
||||| || ||| | ||| || |||| ||||| | |||||||||||| || ||
Sbjct 2252 GCAAAATCACAGTGCAAACCTTCGTCTCTTGAAATTAACTCATTTGAGAAGGTTAATCCA 2311
Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 122778
||||| | ||||| || ||||||||| | || | ||||| ||| |||||| ||
Sbjct 2312 GGCATTAACCCCCGTTTTTTCAACCAAAATATCGAACAGAAGCTTCCGCTGAAGAAAATC 2371
Query 122779 CCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAAC 122838
|| || ||||| ||||| || | | || || ||||||| ||| |||| | |
Sbjct 2372 CCTTCAACACAGGCAAAAGCCACCAAACGCTCCGCGAAGGTTTCGGAC---CCATCGATC 2428
Query 122839 CATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGG 122876
|| | ||||||||||||||||| |||| ||| ||
Sbjct 2429 CAACGAAGGGCCCATTTCGCCTTCTTTTCAACACAAGG 2466
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 627694511304000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |