Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21]
42,990 sequences; 724,284,658 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq1346 96.9 4e-15
seq191 82.4 9e-11
>seq1346
Length=51105
Score = 96.9 bits (106), Expect = 4e-15
Identities = 222/332 (67%), Gaps = 12/332 (4%)
Strand=Plus/Minus
Query 11905 CGGCACATTGGCTCGTGAAGAATTACCGAGAATCCTATGGTCTCTTTGCGTGCTCTGGTA 11964
|||| |||||| | | ||||||||| ||| | || || | || |||||| ||| |
Sbjct 21352 CGGCGCATTGGTACACGGTGAATTACCGGGAAGCGTACGGGATATTCGCGTGCAATGGGA 21293
Query 11965 TTCTCTTCAACCACGAGTCACCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCACC- 12023
||||||||||||||||||| || ||||| || | |||||||||| | |||||| |||
Sbjct 21292 TTCTCTTCAACCACGAGTCTCCTCGTCGGGGTGAGAATTTCGTGACGAGGAAGATTACCC 21233
Query 12024 -----GATGGTATCAAACAAATCGTGGCGGGTGAGAGGGAGTTCATTGAATTGGGGAACC 12078
| || | | | |||||| ||| |||| || | || ||||| ||
Sbjct 21232 GGGCTGTAGGGAGGATAAAAATCG-GGC--TACAGAGCAAGGTTTTT---TTGGGTAATT 21179
Query 12079 TCAACGCCGAGAGGGACTGGGGACATGCCAAGGACTATGTTGAAGCCATGTGGCTCGTAC 12138
| | || ||||||||||| ||| |||||||| ||||| |||||| | | |
Sbjct 21178 TACAGGCGTCAAGGGACTGGGGCTTTGCTGGAGACTATGTAGAAGCAATGTGGATGATGC 21119
Query 12139 TTCAACAAGAAGAGGCGGACGAATATGTCGTCGCGACGGGGGAGACACACTCCGTCAGGG 12198
| || ||||| | | ||||| || || || || |||| ||| |||| | || ||
Sbjct 21118 TGCAGCAAGAGAAACCAGACGACTACGTTGTGGCAACGGAGGATTCACATACTGTAGAGG 21059
Query 12199 AGTTCGTTGAGTTGTGCTTTAGGGAAGTTGGA 12230
|||| | || | |||||| | ||||||
Sbjct 21058 AGTTTCTAGAAGTAGCATTTAGGTACGTTGGA 21027
>seq191
Length=31611
Score = 82.4 bits (90), Expect = 9e-11
Identities = 186/277 (67%), Gaps = 2/277 (1%)
Strand=Plus/Minus
Query 14153 AAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGC 14212
|| |||||||| |||||||| || ||||| || || || || | |||||||| ||
Sbjct 21879 AACCCATCCATTTCAGTCAAAAGCTGATTAATAGTCTGCTCCCTCTCATCATTTCCACCT 21820
Query 14213 ATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACAT 14272
| ||| |||| | |||| | || || || ||||| ||||| || || || |||||
Sbjct 21819 CCAAGACCTGCACCTCTTTGCCTTCCCACAGCATCAATCTCATCAATAAACACAATACAA 21760
Query 14273 GGTTGATTTTCACGG-GCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCAC 14331
|| | ||| || || ||||| | ||| | ||||| || || ||||||||
Sbjct 21759 GGC-GCTTTCGACTTTGCCTTCTCAAACAAATCCCTAACTCTAGAAGCTCCCACACCCAC 21701
Query 14332 AAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCACCCGC 14391
||||| ||| ||||| | | || | ||| || || || || || ||||| ||
Sbjct 21700 AAACAACTCAACAAACTCTGACGCTGCACAAGAGAAAAATGGCACACCAGCCTCACCAGC 21641
Query 14392 GATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGT 14428
| |||| || | |||||||| || || ||||||
Sbjct 21640 TACTGCTCTAGCTAAAAGGGTCTTTCCAGTACCTGGT 21604
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 618102868384400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |