Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21] 42,990 sequences; 724,284,658 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq1346 96.9 4e-15 seq191 82.4 9e-11 >seq1346 Length=51105 Score = 96.9 bits (106), Expect = 4e-15 Identities = 222/332 (67%), Gaps = 12/332 (4%) Strand=Plus/Minus Query 11905 CGGCACATTGGCTCGTGAAGAATTACCGAGAATCCTATGGTCTCTTTGCGTGCTCTGGTA 11964 |||| |||||| | | ||||||||| ||| | || || | || |||||| ||| | Sbjct 21352 CGGCGCATTGGTACACGGTGAATTACCGGGAAGCGTACGGGATATTCGCGTGCAATGGGA 21293 Query 11965 TTCTCTTCAACCACGAGTCACCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCACC- 12023 ||||||||||||||||||| || ||||| || | |||||||||| | |||||| ||| Sbjct 21292 TTCTCTTCAACCACGAGTCTCCTCGTCGGGGTGAGAATTTCGTGACGAGGAAGATTACCC 21233 Query 12024 -----GATGGTATCAAACAAATCGTGGCGGGTGAGAGGGAGTTCATTGAATTGGGGAACC 12078 | || | | | |||||| ||| |||| || | || ||||| || Sbjct 21232 GGGCTGTAGGGAGGATAAAAATCG-GGC--TACAGAGCAAGGTTTTT---TTGGGTAATT 21179 Query 12079 TCAACGCCGAGAGGGACTGGGGACATGCCAAGGACTATGTTGAAGCCATGTGGCTCGTAC 12138 | | || ||||||||||| ||| |||||||| ||||| |||||| | | | Sbjct 21178 TACAGGCGTCAAGGGACTGGGGCTTTGCTGGAGACTATGTAGAAGCAATGTGGATGATGC 21119 Query 12139 TTCAACAAGAAGAGGCGGACGAATATGTCGTCGCGACGGGGGAGACACACTCCGTCAGGG 12198 | || ||||| | | ||||| || || || || |||| ||| |||| | || || Sbjct 21118 TGCAGCAAGAGAAACCAGACGACTACGTTGTGGCAACGGAGGATTCACATACTGTAGAGG 21059 Query 12199 AGTTCGTTGAGTTGTGCTTTAGGGAAGTTGGA 12230 |||| | || | |||||| | |||||| Sbjct 21058 AGTTTCTAGAAGTAGCATTTAGGTACGTTGGA 21027 >seq191 Length=31611 Score = 82.4 bits (90), Expect = 9e-11 Identities = 186/277 (67%), Gaps = 2/277 (1%) Strand=Plus/Minus Query 14153 AAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGC 14212 || |||||||| |||||||| || ||||| || || || || | |||||||| || Sbjct 21879 AACCCATCCATTTCAGTCAAAAGCTGATTAATAGTCTGCTCCCTCTCATCATTTCCACCT 21820 Query 14213 ATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACAT 14272 | ||| |||| | |||| | || || || ||||| ||||| || || || ||||| Sbjct 21819 CCAAGACCTGCACCTCTTTGCCTTCCCACAGCATCAATCTCATCAATAAACACAATACAA 21760 Query 14273 GGTTGATTTTCACGG-GCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCAC 14331 || | ||| || || ||||| | ||| | ||||| || || |||||||| Sbjct 21759 GGC-GCTTTCGACTTTGCCTTCTCAAACAAATCCCTAACTCTAGAAGCTCCCACACCCAC 21701 Query 14332 AAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCACCCGC 14391 ||||| ||| ||||| | | || | ||| || || || || || ||||| || Sbjct 21700 AAACAACTCAACAAACTCTGACGCTGCACAAGAGAAAAATGGCACACCAGCCTCACCAGC 21641 Query 14392 GATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGT 14428 | |||| || | |||||||| || || |||||| Sbjct 21640 TACTGCTCTAGCTAAAAGGGTCTTTCCAGTACCTGGT 21604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618102868384400