Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21] 42,990 sequences; 724,284,658 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq15443 125 8e-24 seq191 114 2e-20 >seq15443 Length=42915 Score = 125 bits (138), Expect = 8e-24 Identities = 305/450 (68%), Gaps = 18/450 (4%) Strand=Plus/Plus Query 9526 ATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGC 9585 |||||| || ||||| | || | || ||||| ||||| | ||||| || || || Sbjct 29415 ATCAAATCGTCCTGGCCTCAGCAAAGCAGAGTCAAGAATATCTGCACGATTGGTTGCCGC 29474 Query 9586 GATGACAACAATACCTGT--TTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9643 | || | ||||| || ||| || | ||||||||||| || ||||| |||||||| Sbjct 29475 AACAACTATTATACCAGTATTTCCTT--CGAAACCATCCATTTCAGTCAATAGTTGGTTC 29532 Query 9644 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCA 9701 | || ||||||| ||||||||| || | | | | |||| | | |||| || | Sbjct 29533 AGGGTCTGTTCCCTTTCATCATTTCCT--CCTCCAATTCCAGTCCCTCTTTGCCGCCCAA 29590 Query 9702 CGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTT-CGCGAGCGACTTCAAAG 9760 | |||||||| ||||||| || || ||||| || ||||| | | | ||| ||| Sbjct 29591 CAGCATCAATTTCATCAACAAATACAATGCAAGGAGCATTTTCCTTGGCCTTCTTGAAA- 29649 Query 9761 AGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAA 9820 ||||| || || || ||| || ||||||||||||||||| || || | || | ||| Sbjct 29650 AGATCACGGACTCGAGAGGCTCCAACACCAACAAACATCTCAACGAATTCTGAACCTGAA 29709 Query 9821 CATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 9879 |||| || || || ||| | |||||| ||||| || || || | || || || Sbjct 29710 -ATTGAGAAAAATGGAACACCCGCTTCACCAGCAATTGCCTTTGCTAGCAAGGTTTTCCC 29768 Query 9880 CGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAAT-CTTGGCGCCACTTCCAAAGT 9938 ||||| || ||| | || || ||||| |||||| | | | ||||| | ||| Sbjct 29769 AGTACCAGGAGGACCAACAAGAAGAACACCTTTTGGAATACGAGCCCCCACTGC---AGT 29825 Query 9939 --ATCTCTCAGGTTGCTTAAGAAAATCCAC 9966 ||||||| |||| ||| | ||| || || Sbjct 29826 AAATCTCTCGGGTTTCTTCAAAAATTCTAC 29855 >seq191 Length=31611 Score = 114 bits (126), Expect = 2e-20 Identities = 196/279 (70%), Gaps = 8/279 (3%) Strand=Plus/Minus Query 9614 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9673 || |||||||| || |||||||| || |||||||| || |||| |||||||| | Sbjct 21879 AACCCATCCATTTCAGTCAAAAGCTGATTAATAGTCTGCTCCCTCTCATCATTTCCACCT 21820 Query 9674 ATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCAT 9733 | ||| |||| | |||| ||||||| ||||||||||||||||| || || || || Sbjct 21819 CCAAGACCTGCACCTCTTTGCCTTCCCACAGCATCAATCTCATCAATAAACACAATACAA 21760 Query 9734 GGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTG--GCGCCCACACC 9789 || ||||| | || ||||| | ||||| || || || | || |||||||| Sbjct 21759 GG--CGCTTTCGACTTTGCCTTCTCAAACAAATCCC-TA-ACTCTAGAAGCTCCCACACC 21704 Query 9790 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACC 9849 ||||||| ||| ||||| | || || | ||| || || || ||| || ||||| Sbjct 21703 CACAAACAACTCAACAAACTCTGACGCTGCACAAGAGAAAAATGGCACACCAGCCTCACC 21644 Query 9850 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888 || | |||| || | ||| ||||| || |||||||| Sbjct 21643 AGCTACTGCTCTAGCTAAAAGGGTCTTTCCAGTACCTGG 21605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582947370227600