Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21]
42,990 sequences; 724,284,658 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq15443 125 8e-24
seq191 114 2e-20
>seq15443
Length=42915
Score = 125 bits (138), Expect = 8e-24
Identities = 305/450 (68%), Gaps = 18/450 (4%)
Strand=Plus/Plus
Query 9526 ATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGC 9585
|||||| || ||||| | || | || ||||| ||||| | ||||| || || ||
Sbjct 29415 ATCAAATCGTCCTGGCCTCAGCAAAGCAGAGTCAAGAATATCTGCACGATTGGTTGCCGC 29474
Query 9586 GATGACAACAATACCTGT--TTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9643
| || | ||||| || ||| || | ||||||||||| || ||||| ||||||||
Sbjct 29475 AACAACTATTATACCAGTATTTCCTT--CGAAACCATCCATTTCAGTCAATAGTTGGTTC 29532
Query 9644 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCA 9701
| || ||||||| ||||||||| || | | | | |||| | | |||| || |
Sbjct 29533 AGGGTCTGTTCCCTTTCATCATTTCCT--CCTCCAATTCCAGTCCCTCTTTGCCGCCCAA 29590
Query 9702 CGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTT-CGCGAGCGACTTCAAAG 9760
| |||||||| ||||||| || || ||||| || ||||| | | | ||| |||
Sbjct 29591 CAGCATCAATTTCATCAACAAATACAATGCAAGGAGCATTTTCCTTGGCCTTCTTGAAA- 29649
Query 9761 AGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAA 9820
||||| || || || ||| || ||||||||||||||||| || || | || | |||
Sbjct 29650 AGATCACGGACTCGAGAGGCTCCAACACCAACAAACATCTCAACGAATTCTGAACCTGAA 29709
Query 9821 CATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 9879
|||| || || || ||| | |||||| ||||| || || || | || || ||
Sbjct 29710 -ATTGAGAAAAATGGAACACCCGCTTCACCAGCAATTGCCTTTGCTAGCAAGGTTTTCCC 29768
Query 9880 CGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAAT-CTTGGCGCCACTTCCAAAGT 9938
||||| || ||| | || || ||||| |||||| | | | ||||| | |||
Sbjct 29769 AGTACCAGGAGGACCAACAAGAAGAACACCTTTTGGAATACGAGCCCCCACTGC---AGT 29825
Query 9939 --ATCTCTCAGGTTGCTTAAGAAAATCCAC 9966
||||||| |||| ||| | ||| || ||
Sbjct 29826 AAATCTCTCGGGTTTCTTCAAAAATTCTAC 29855
>seq191
Length=31611
Score = 114 bits (126), Expect = 2e-20
Identities = 196/279 (70%), Gaps = 8/279 (3%)
Strand=Plus/Minus
Query 9614 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9673
|| |||||||| || |||||||| || |||||||| || |||| |||||||| |
Sbjct 21879 AACCCATCCATTTCAGTCAAAAGCTGATTAATAGTCTGCTCCCTCTCATCATTTCCACCT 21820
Query 9674 ATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCAT 9733
| ||| |||| | |||| ||||||| ||||||||||||||||| || || || ||
Sbjct 21819 CCAAGACCTGCACCTCTTTGCCTTCCCACAGCATCAATCTCATCAATAAACACAATACAA 21760
Query 9734 GGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTG--GCGCCCACACC 9789
|| ||||| | || ||||| | ||||| || || || | || ||||||||
Sbjct 21759 GG--CGCTTTCGACTTTGCCTTCTCAAACAAATCCC-TA-ACTCTAGAAGCTCCCACACC 21704
Query 9790 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACC 9849
||||||| ||| ||||| | || || | ||| || || || ||| || |||||
Sbjct 21703 CACAAACAACTCAACAAACTCTGACGCTGCACAAGAGAAAAATGGCACACCAGCCTCACC 21644
Query 9850 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888
|| | |||| || | ||| ||||| || ||||||||
Sbjct 21643 AGCTACTGCTCTAGCTAAAAGGGTCTTTCCAGTACCTGG 21605
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 582947370227600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |