Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21] 42,990 sequences; 724,284,658 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq728 113 5e-20 seq8423 86.0 7e-12 seq58 86.0 7e-12 seq12838 82.4 8e-11 seq7587 82.4 8e-11 seq996 82.4 8e-11 >seq728 Length=46982 Score = 113 bits (124), Expect = 5e-20 Identities = 287/424 (68%), Gaps = 16/424 (4%) Strand=Plus/Plus Query 74763 TGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCA 74822 ||| | ||||| ||||| || || ||||| || || | | |||||||| | || Sbjct 2264 TGCAAACCTTCGTCTCTTGAAATTAACTCATTTGAGAAGGTTAATCCAGGCATTAACCCC 2323 Query 74823 CGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACAC 74882 || || ||||||||||| || | ||||||| || |||||||| || ||||| ||||| Sbjct 2324 CGTTTTTTCAACCAAAATATCGAACAGAAGCTTCCGCTGAAGAAAATCCCTTCAACACAG 2383 Query 74883 GCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCGGA---AGTCATCCAAGTCTGAGCC 74939 ||||| || || | || | |||||| ||| ||||| | |||||| | ||| Sbjct 2384 GCAAAAGCCACCAAACGCTCCGCGAA-GGT--TTCGGACCCATCGATCCAACGAAGGGCC 2440 Query 74940 CATTCAGCTTTTCGTTTGACCGC-AGGGACAGTATCGATCGCTTGGAAGAGGCTTGC-CT 74997 |||| || ||| ||| | | | ||||| || || ||||| |||| | |||| || Sbjct 2441 CATTTCGC-CTTCTTTTCAACACAAGGGATTGTCTCAATCGCACGGAACA-ATTTGCTCT 2498 Query 74998 TCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAATCG 75057 | || || | |||||||| | | || | || | |||| |||| ||||| || Sbjct 2499 TTTCGTCAGAATCCTTGATGTACGACTCCAACAGCAAACTGTACATCTCGGAATGGATAT 2558 Query 75058 ACTCGTTGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACATCCTT- 75115 ||| || ||| ||| || | ||||||| || |||| |||| ||| || || || Sbjct 2559 TCTCAATG-GCGATTTGGAACCCATAGAAAGCACGAACCTCGGCAACCTGGACGTCTTTC 2617 Query 75116 -TGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCA 75174 |||| | || ||| ||||| | ||||||||||| ||||| || ||||| || | Sbjct 2618 ATGAACCTTCCA--GCGAGGTTCTCTAAAACGATGCCGTCTGAGGCAGCAAAAAAGGCAA 2675 Query 75175 GTAC 75178 | || Sbjct 2676 GAAC 2679 >seq8423 Length=24552 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 10521 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 10462 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 10461 TGAGCTATGAAAGC 10448 >seq58 Length=132714 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||| ||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 95199 TGCTCTCGTTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 95140 Query 79684 TGAGCTACGAAAGC 79697 |||||||||| ||| Sbjct 95139 TGAGCTACGAGAGC 95126 >seq12838 Length=24451 Score = 82.4 bits (90), Expect = 8e-11 Identities = 65/77 (84%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 79622 GACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACC 79680 || |||| ||| |||| | || |||| ||||||||||||||||||||||||||| ||| Sbjct 19075 GATTGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACC 19016 Query 79681 AATTGAGCTACGAAAGC 79697 || |||||||||| ||| Sbjct 19015 AACTGAGCTACGAGAGC 18999 >seq7587 Length=20862 Score = 82.4 bits (90), Expect = 8e-11 Identities = 65/77 (84%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 79622 GACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACC 79680 || |||| ||| |||| | || |||| ||||||||||||||||||||||||||| ||| Sbjct 2999 GATTGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACC 2940 Query 79681 AATTGAGCTACGAAAGC 79697 || |||||||||| ||| Sbjct 2939 AACTGAGCTACGAGAGC 2923 >seq996 Length=87063 Score = 82.4 bits (90), Expect = 8e-11 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 42917 TGCTTTCATTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 42858 Query 79684 TGAGCTACGAAAGCA 79698 ||||||| ||||||| Sbjct 42857 TGAGCTATGAAAGCA 42843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546921939802000