Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21] 42,990 sequences; 724,284,658 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq545 156 3e-33 seq796 125 4e-24 seq3886 107 1e-18 seq544 95.1 8e-15 >seq545 Length=31085 Score = 156 bits (172), Expect = 3e-33 Identities = 173/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | ||||||||||| ||||||||| |||||| || ||||| || |||| | Sbjct 3323 CCTCCTCTCAAACGCAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCA 3264 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || | | | || |||||||||||||| ||||| || |||||||||||||| || || Sbjct 3263 AGAGTCCTCCCRTCCTCAAGTTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGGA 3204 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | |||||||||||| ||| |||| ||| || | ||| || ||| ||||| || Sbjct 3203 ATACCCTCCTTGTCT-TGAATCTTTGCTTTCACATTGTCAATGGTATCTGAACTCTCAAC 3145 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 |||| || || || || || || || || || |||||||| |||||| Sbjct 3144 CTCCAATGTAATTGTCTTCCCAGTCAAAGTCTTGACAAAAATTTGCATG 3096 Score = 156 bits (172), Expect = 3e-33 Identities = 172/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | ||||||||||| ||||||||| |||||| || ||||| || |||| | Sbjct 3551 CCTCCTCTCAAACGCAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCA 3492 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || | | | || ||||| |||||||| ||||| || |||||||||||||| || || Sbjct 3491 AGAGTCCTCCCRTCCTCAAGWTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGGA 3432 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | |||||||||||| ||| |||| ||| || | ||| || ||| ||||| || Sbjct 3431 ATACCCTCCTTGTCT-TGAATCTTTGCTTTCACATTGTCAATGGTATCTGAACTCTCAAC 3373 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| || || || || || || || || |||||||| |||||||| Sbjct 3372 CTCCAATGTGATTGTCTTCCCAGTCAAAGTCTTCACAAAGATCTGCAT 3325 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| |||||||| || | || | || || || || || |||||||| ||||||| Sbjct 3096 GCCACCTCTAAGGCGAAGAACAAGGTGCAGGGTTGATTCTTTCTGAATGTTGTAATCTGC 3037 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 | || | | || |||||||| || || ||||| || || | ||| ||||| || || Sbjct 3036 CAACGTCCTTCCATCCTCAAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGGTCTGGAGG 2977 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | |||||||||||| |||| |||| |||||| | || || ||| ||||| | Sbjct 2976 AATACCCTCCTTGTCTTGGATC-TTTGCTTTAACATTGTCGATGGTATCTGAACTCTCAA 2918 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 | |||| || || || || || || || || || ||||| || |||||| Sbjct 2917 CCTCCAAAGTAATTGTCTTCCCTGTCAATGTCTTGACAAATATTTGCATG 2868 >seq796 Length=44438 Score = 125 bits (138), Expect = 4e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | |||||| || |||||| ||| ||||||||||| ||||| | Sbjct 18831 CCACCACGAAGACGGAGCACCAAGTGAAGAGTGGACTCTTTTTGAATGTTGTAATCGGCG 18772 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | |||||||| || || || ||||| || | | ||| ||||| || || Sbjct 18771 AGGGTACGGCCATCTTCAAGCTGCTTGCCCGCAAAGATCAGCCTCTGCTGGTCTGGGGGA 18712 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | || |||||||| |||| || | ||||||| | ||| |||||| ||| ||||| Sbjct 18711 ATGCCTTCCTTGTCCTGGATC-TTGGCTTTAACGTTGTCAATGGTGTCTGAGCTTTCCAC 18653 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | ||| || || || || || | ||||| ||||| |||||||| Sbjct 18652 CTCAAGGGTGATGGTCTTTCCAGTGAGGGTTTTGACAAATATCTGCAT 18605 Score = 120 bits (132), Expect = 2e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | ||||| || || || |||||| || ||||||||||| | | Sbjct 19515 CCACCGCGAAGACGAAGGACCAAGTGAAGGGTTGACTCCTTCTGGATGTTATAATCAGCA 19456 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || |||| ||||| || || |||||||| || || | ||| ||||| || || Sbjct 19455 AGGGTCCGGCCGTCCTCAAGCTGCTTTCCGGCAAAGATCAATCTCTGCTGGTCTGGTGGA 19396 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | || |||||||| |||| || | |||||| | ||| ||||| ||| || || Sbjct 19395 ATGCCTTCCTTGTCCTGGATC-TTGGCTTTAACATTGTCAATAGTGTCGGAGCTTTCAAC 19337 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | ||| || || || ||||| || || ||||||||||| ||||| Sbjct 19336 CTCAAGGGTGATGGTCTTTCCGGTCAAGGTCTTCACAAAAATTTGCAT 19289 Score = 114 bits (126), Expect = 8e-21 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | |||||| || || || ||||| || ||||| ||||| | | Sbjct 19287 CCACCACGAAGACGGAGCACCAAGTGAAGRGTTGATTCCTTYTGGATGTTGTAATCAGCA 19228 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || | |||| ||||| || || |||||||| || || | ||| ||||| || || Sbjct 19227 AGGGTCCTGCCGTCCTCAAGCTGCTTTCCGGCAAAGATCAATCTCTGCTGGTCTGGGGGA 19168 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCAC 34658 | || |||||||| |||||| | |||||| | ||| ||||| ||| || || Sbjct 19167 ATGCCTTCCTTGTCCTGGATCTTG-GCTTTAACATTGTCAATAGTGTCGGAGCTTTCAAC 19109 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | ||| || || || ||||| || || ||||||||||| ||||| Sbjct 19108 CTCAAGGGTGATGGTCTTTCCGGTCAAAGTCTTCACAAAAATTTGCAT 19061 Score = 98.7 bits (108), Expect = 6e-16 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 34515 CTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAA 34574 ||||||||| ||||| || || | || || | | |||||||| || || || ||||| Sbjct 20164 CTCCTTTTGGATGTTGTAGTCCGCCAGAGTCCTTCCATCTTCAAGCTGCTTCCCTGCAAA 20105 Query 34575 TATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGA 34634 || | | ||| |||||||| || | |||||||||||| ||| || | || || Sbjct 20104 GATCAGTCTCTGCTGGTCCGGTGGGATTCCCTCCTTGTC-CTGAATCTTAGCCTTCACAT 20046 Query 34635 T-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCA 34693 | ||| || || |||||||| |||| ||||| ||||| || || || || |||| Sbjct 20045 TGTCAATGGTATCAGAACTCTCCACCTCCAAAGTTATGGTTTTCCCAGTCAAGGTCTTCA 19986 Query 34694 CAAAAATCTGCAT 34706 ||||||||||||| Sbjct 19985 CAAAAATCTGCAT 19973 >seq3886 Length=20373 Score = 107 bits (118), Expect = 1e-18 Identities = 141/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 34515 CTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAA 34574 |||||| || ||||| || || | ||| || || |||| || || || ||||| || || Sbjct 13262 CTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGGCCGTCCTCGAGCTGCTTACCAGCGAA 13321 Query 34575 TATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGA 34634 || || | ||| ||||| || || | |||||||||||| |||| || | ||||| Sbjct 13322 GATCAACCTCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGGATC-TTAGCCTTAACAT 13380 Query 34635 TA-AAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCA 34693 || ||| ||||| ||| ||||| |||| || || || || ||||| | || |||| Sbjct 13381 TATCAATGGTGTCGGAGCTTTCCACCTCCAAAGTGATGGTCTTTCCGGTGAGGGTCTTCA 13440 Query 34694 CAAAAATCTGCAT 34706 ||||||||||||| Sbjct 13441 CAAAAATCTGCAT 13453 Score = 100 bits (110), Expect = 2e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||||||||||| ||| |||||| || ||||| || || | || || || Sbjct 13692 AGACGGAGCACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCTAGGGTGCGG 13751 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| | || || || ||||| || || | ||| ||||| || || | || ||| Sbjct 13752 CCATCTTCCAACTGCTTTCCTGCAAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCC 13811 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 || || |||| || | || ||| | ||| |||||| ||| || || || | ||| Sbjct 13812 TTATCCTGGATC-TTAGCCTTGACGTTGTCAATGGTGTCTGAGCTTTCGACCTCAAGGGT 13870 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| ||||| || | || ||||| || |||||||| Sbjct 13871 AATCGTCTTACCCGTAAGAGTCTTCACGAAGATCTGCAT 13909 Score = 95.1 bits (104), Expect = 8e-15 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||||||||||| ||| |||||| || ||||||||||| | || || || Sbjct 13920 AGACGGAGCACCAAATGGAGGGTGGACTCCTTCTGGATGTTATAATCAGCTAGAGTCCGT 13979 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || | || || ||||| || || | | || || || || || | || ||| Sbjct 13980 CCGTCCTCCAACTGCTTTCCGGCGAAGATAAGCCTTTGCTGATCAGGGGGAATCCCTTCC 14039 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||| || | |||||| | ||||| || || ||||| || | ||| Sbjct 14040 TTGTCCTGGATC-TTAGCCTTAACGTTGTCGATTGTATCAGAACTTTCCACCTCTAGGGT 14098 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || ||||| | |||||||| || |||||||| Sbjct 14099 GATAGTCTTTCCGGTGAGAGTTTTCACGAAGATCTGCAT 14137 Score = 93.3 bits (102), Expect = 3e-14 Identities = 151/213 (71%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 34497 CACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG--AAAGTGTTCGCTCGTCT 34554 |||||| || || || ||||||||| ||||| || || | |||||| || | || Sbjct 13016 CACCAAGTGCAGGGTCGACTCCTTTTGGATGTTGTAGTCCGCCAAAGTG--CGGCCATCC 13073 Query 34555 TCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCT 34614 || || || || || ||||| || || | ||| ||||| || || | |||||||||||| Sbjct 13074 TCGAGCTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCTGGGGGAATACCCTCCTTGTCT 13133 Query 34615 GTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGT 34673 |||| || | || || | ||| ||||| |||||| || |||| ||| || || Sbjct 13134 TGGATC-TTGGCCTTGACATTGTCAATGGTGTCGGAGCTCTCAACCTCCAGGGTGATGGT 13192 Query 34674 TTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| ||||| | || || ||||| || ||||| Sbjct 13193 TTTCCCGGTAAGGGTCTTAACAAAGATTTGCAT 13225 Score = 84.2 bits (92), Expect = 1e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 34515 CTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAA 34574 |||||| || || || || || | ||| || || | || ||||| || ||||| || || Sbjct 12806 CTCCTTCTGGATATTGTAGTCAGCAAGGGTGCGGCCATCCTCAAGCTGCTTACCAGCGAA 12865 Query 34575 TATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGA 34634 || || | ||| ||||| || || | ||||||||||| ||| || | ||| || Sbjct 12866 GATCAACCTCTGCTGGTCTGGTGGGATCCCCTCCTTGTC-CTGAATCTTAGCTTTCACAT 12924 Query 34635 T-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCA 34693 | || ||||| |||||||| |||| || || || || ||||| || || |||| Sbjct 12925 TGTCGATGGTGTCAGAACTCTCCACCTCCAAAGTGATGGTCTTCCCGGTCAAGGTCTTCA 12984 Query 34694 CAAAAATCTGCAT 34706 |||| |||||||| Sbjct 12985 CAAAGATCTGCAT 12997 >seq544 Length=28317 Score = 95.1 bits (104), Expect = 8e-15 Identities = 162/231 (70%), Gaps = 3/231 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||||||||||||||| | || | || || || || || |||||||| ||||||| Sbjct 21618 GCCGCCTCTAAGACGAAGAACAAGGTGCAGGGTTGACTGTTTCTGAATGTTGTAATCTGC 21677 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 | || | | ||||||||||| | || |||||||| || | ||| |||| || || Sbjct 21678 CAAGGTCCTTCCATCTTCAAGTTGCTCTCCAGCAAATATCAATCTCTGCTGGTTTGGAGG 21737 Query 34599 CACTCCCTCC-TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCC 34656 | |||||| |||||| |||| |||| |||||| | || || ||| ||||| Sbjct 21738 AATACCCTCCTTTGTCTTGGATC-TTTGCTTTAACATTGTTGATAGTATCTGAACTCTCA 21796 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || |||| || || || || || || || || || ||||| || |||||| Sbjct 21797 ACCTCCAAAGTAATTGTCTTCCCTGTCAATGTCTTAACAAATATTTGCATG 21847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314564700376670