Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21]
42,990 sequences; 724,284,658 total letters
Query= NC_028491.1
Length=98392
Score E
Sequences producing significant alignments: (Bits) Value
seq545 156 3e-33
seq796 125 4e-24
seq3886 107 1e-18
seq544 95.1 8e-15
>seq545
Length=31085
Score = 156 bits (172), Expect = 3e-33
Identities = 173/229 (76%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| ||||| | ||||||||||| ||||||||| |||||| || ||||| || |||| |
Sbjct 3323 CCTCCTCTCAAACGCAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCA 3264
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
|| || | | | || |||||||||||||| ||||| || |||||||||||||| || ||
Sbjct 3263 AGAGTCCTCCCRTCCTCAAGTTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGGA 3204
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658
| |||||||||||| ||| |||| ||| || | ||| || ||| ||||| ||
Sbjct 3203 ATACCCTCCTTGTCT-TGAATCTTTGCTTTCACATTGTCAATGGTATCTGAACTCTCAAC 3145
Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707
|||| || || || || || || || || || |||||||| ||||||
Sbjct 3144 CTCCAATGTAATTGTCTTCCCAGTCAAAGTCTTGACAAAAATTTGCATG 3096
Score = 156 bits (172), Expect = 3e-33
Identities = 172/228 (75%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| ||||| | ||||||||||| ||||||||| |||||| || ||||| || |||| |
Sbjct 3551 CCTCCTCTCAAACGCAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCA 3492
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
|| || | | | || ||||| |||||||| ||||| || |||||||||||||| || ||
Sbjct 3491 AGAGTCCTCCCRTCCTCAAGWTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGGA 3432
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658
| |||||||||||| ||| |||| ||| || | ||| || ||| ||||| ||
Sbjct 3431 ATACCCTCCTTGTCT-TGAATCTTTGCTTTCACATTGTCAATGGTATCTGAACTCTCAAC 3373
Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|||| || || || || || || || || |||||||| ||||||||
Sbjct 3372 CTCCAATGTGATTGTCTTCCCAGTCAAAGTCTTCACAAAGATCTGCAT 3325
Score = 93.3 bits (102), Expect = 3e-14
Identities = 160/230 (70%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538
||| |||||||| || | || | || || || || || |||||||| |||||||
Sbjct 3096 GCCACCTCTAAGGCGAAGAACAAGGTGCAGGGTTGATTCTTTCTGAATGTTGTAATCTGC 3037
Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598
| || | | || |||||||| || || ||||| || || | ||| ||||| || ||
Sbjct 3036 CAACGTCCTTCCATCCTCAAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGGTCTGGAGG 2977
Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657
| |||||||||||| |||| |||| |||||| | || || ||| ||||| |
Sbjct 2976 AATACCCTCCTTGTCTTGGATC-TTTGCTTTAACATTGTCGATGGTATCTGAACTCTCAA 2918
Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707
| |||| || || || || || || || || || ||||| || ||||||
Sbjct 2917 CCTCCAAAGTAATTGTCTTCCCTGTCAATGTCTTGACAAATATTTGCATG 2868
>seq796
Length=44438
Score = 125 bits (138), Expect = 4e-24
Identities = 166/228 (73%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| || | |||||| | |||||| || |||||| ||| ||||||||||| ||||| |
Sbjct 18831 CCACCACGAAGACGGAGCACCAAGTGAAGAGTGGACTCTTTTTGAATGTTGTAATCGGCG 18772
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
|| || || | |||||||| || || || ||||| || | | ||| ||||| || ||
Sbjct 18771 AGGGTACGGCCATCTTCAAGCTGCTTGCCCGCAAAGATCAGCCTCTGCTGGTCTGGGGGA 18712
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658
| || |||||||| |||| || | ||||||| | ||| |||||| ||| |||||
Sbjct 18711 ATGCCTTCCTTGTCCTGGATC-TTGGCTTTAACGTTGTCAATGGTGTCTGAGCTTTCCAC 18653
Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| | ||| || || || || || | ||||| ||||| ||||||||
Sbjct 18652 CTCAAGGGTGATGGTCTTTCCAGTGAGGGTTTTGACAAATATCTGCAT 18605
Score = 120 bits (132), Expect = 2e-22
Identities = 165/228 (72%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| || | |||||| | ||||| || || || |||||| || ||||||||||| | |
Sbjct 19515 CCACCGCGAAGACGAAGGACCAAGTGAAGGGTTGACTCCTTCTGGATGTTATAATCAGCA 19456
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
|| || || |||| ||||| || || |||||||| || || | ||| ||||| || ||
Sbjct 19455 AGGGTCCGGCCGTCCTCAAGCTGCTTTCCGGCAAAGATCAATCTCTGCTGGTCTGGTGGA 19396
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658
| || |||||||| |||| || | |||||| | ||| ||||| ||| || ||
Sbjct 19395 ATGCCTTCCTTGTCCTGGATC-TTGGCTTTAACATTGTCAATAGTGTCGGAGCTTTCAAC 19337
Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| | ||| || || || ||||| || || ||||||||||| |||||
Sbjct 19336 CTCAAGGGTGATGGTCTTTCCGGTCAAGGTCTTCACAAAAATTTGCAT 19289
Score = 114 bits (126), Expect = 8e-21
Identities = 163/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| || | |||||| | |||||| || || || ||||| || ||||| ||||| | |
Sbjct 19287 CCACCACGAAGACGGAGCACCAAGTGAAGRGTTGATTCCTTYTGGATGTTGTAATCAGCA 19228
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
|| || | |||| ||||| || || |||||||| || || | ||| ||||| || ||
Sbjct 19227 AGGGTCCTGCCGTCCTCAAGCTGCTTTCCGGCAAAGATCAATCTCTGCTGGTCTGGGGGA 19168
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCAC 34658
| || |||||||| |||||| | |||||| | ||| ||||| ||| || ||
Sbjct 19167 ATGCCTTCCTTGTCCTGGATCTTG-GCTTTAACATTGTCAATAGTGTCGGAGCTTTCAAC 19109
Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| | ||| || || || ||||| || || ||||||||||| |||||
Sbjct 19108 CTCAAGGGTGATGGTCTTTCCGGTCAAAGTCTTCACAAAAATTTGCAT 19061
Score = 98.7 bits (108), Expect = 6e-16
Identities = 139/193 (72%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 34515 CTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAA 34574
||||||||| ||||| || || | || || | | |||||||| || || || |||||
Sbjct 20164 CTCCTTTTGGATGTTGTAGTCCGCCAGAGTCCTTCCATCTTCAAGCTGCTTCCCTGCAAA 20105
Query 34575 TATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGA 34634
|| | | ||| |||||||| || | |||||||||||| ||| || | || ||
Sbjct 20104 GATCAGTCTCTGCTGGTCCGGTGGGATTCCCTCCTTGTC-CTGAATCTTAGCCTTCACAT 20046
Query 34635 T-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCA 34693
| ||| || || |||||||| |||| ||||| ||||| || || || || ||||
Sbjct 20045 TGTCAATGGTATCAGAACTCTCCACCTCCAAAGTTATGGTTTTCCCAGTCAAGGTCTTCA 19986
Query 34694 CAAAAATCTGCAT 34706
|||||||||||||
Sbjct 19985 CAAAAATCTGCAT 19973
>seq3886
Length=20373
Score = 107 bits (118), Expect = 1e-18
Identities = 141/193 (73%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 34515 CTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAA 34574
|||||| || ||||| || || | ||| || || |||| || || || ||||| || ||
Sbjct 13262 CTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGGCCGTCCTCGAGCTGCTTACCAGCGAA 13321
Query 34575 TATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGA 34634
|| || | ||| ||||| || || | |||||||||||| |||| || | |||||
Sbjct 13322 GATCAACCTCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGGATC-TTAGCCTTAACAT 13380
Query 34635 TA-AAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCA 34693
|| ||| ||||| ||| ||||| |||| || || || || ||||| | || ||||
Sbjct 13381 TATCAATGGTGTCGGAGCTTTCCACCTCCAAAGTGATGGTCTTTCCGGTGAGGGTCTTCA 13440
Query 34694 CAAAAATCTGCAT 34706
|||||||||||||
Sbjct 13441 CAAAAATCTGCAT 13453
Score = 100 bits (110), Expect = 2e-16
Identities = 155/219 (71%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||| | |||||||||||| ||| |||||| || ||||| || || | || || ||
Sbjct 13692 AGACGGAGCACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCTAGGGTGCGG 13751
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| ||||| | || || || ||||| || || | ||| ||||| || || | || |||
Sbjct 13752 CCATCTTCCAACTGCTTTCCTGCAAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCC 13811
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
|| || |||| || | || ||| | ||| |||||| ||| || || || | |||
Sbjct 13812 TTATCCTGGATC-TTAGCCTTGACGTTGTCAATGGTGTCTGAGCTTTCGACCTCAAGGGT 13870
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
||||| ||||| || | || ||||| || ||||||||
Sbjct 13871 AATCGTCTTACCCGTAAGAGTCTTCACGAAGATCTGCAT 13909
Score = 95.1 bits (104), Expect = 8e-15
Identities = 154/219 (70%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||| | |||||||||||| ||| |||||| || ||||||||||| | || || ||
Sbjct 13920 AGACGGAGCACCAAATGGAGGGTGGACTCCTTCTGGATGTTATAATCAGCTAGAGTCCGT 13979
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
|||| || | || || ||||| || || | | || || || || || | || |||
Sbjct 13980 CCGTCCTCCAACTGCTTTCCGGCGAAGATAAGCCTTTGCTGATCAGGGGGAATCCCTTCC 14039
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
||||| |||| || | |||||| | ||||| || || ||||| || | |||
Sbjct 14040 TTGTCCTGGATC-TTAGCCTTAACGTTGTCGATTGTATCAGAACTTTCCACCTCTAGGGT 14098
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| || || ||||| | |||||||| || ||||||||
Sbjct 14099 GATAGTCTTTCCGGTGAGAGTTTTCACGAAGATCTGCAT 14137
Score = 93.3 bits (102), Expect = 3e-14
Identities = 151/213 (71%), Gaps = 6/213 (3%)
Strand=Plus/Plus
Query 34497 CACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG--AAAGTGTTCGCTCGTCT 34554
|||||| || || || ||||||||| ||||| || || | |||||| || | ||
Sbjct 13016 CACCAAGTGCAGGGTCGACTCCTTTTGGATGTTGTAGTCCGCCAAAGTG--CGGCCATCC 13073
Query 34555 TCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCT 34614
|| || || || || ||||| || || | ||| ||||| || || | ||||||||||||
Sbjct 13074 TCGAGCTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCTGGGGGAATACCCTCCTTGTCT 13133
Query 34615 GTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGT 34673
|||| || | || || | ||| ||||| |||||| || |||| ||| || ||
Sbjct 13134 TGGATC-TTGGCCTTGACATTGTCAATGGTGTCGGAGCTCTCAACCTCCAGGGTGATGGT 13192
Query 34674 TTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
||| ||||| | || || ||||| || |||||
Sbjct 13193 TTTCCCGGTAAGGGTCTTAACAAAGATTTGCAT 13225
Score = 84.2 bits (92), Expect = 1e-11
Identities = 136/193 (70%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 34515 CTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAA 34574
|||||| || || || || || | ||| || || | || ||||| || ||||| || ||
Sbjct 12806 CTCCTTCTGGATATTGTAGTCAGCAAGGGTGCGGCCATCCTCAAGCTGCTTACCAGCGAA 12865
Query 34575 TATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGA 34634
|| || | ||| ||||| || || | ||||||||||| ||| || | ||| ||
Sbjct 12866 GATCAACCTCTGCTGGTCTGGTGGGATCCCCTCCTTGTC-CTGAATCTTAGCTTTCACAT 12924
Query 34635 T-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCA 34693
| || ||||| |||||||| |||| || || || || ||||| || || ||||
Sbjct 12925 TGTCGATGGTGTCAGAACTCTCCACCTCCAAAGTGATGGTCTTCCCGGTCAAGGTCTTCA 12984
Query 34694 CAAAAATCTGCAT 34706
|||| ||||||||
Sbjct 12985 CAAAGATCTGCAT 12997
>seq544
Length=28317
Score = 95.1 bits (104), Expect = 8e-15
Identities = 162/231 (70%), Gaps = 3/231 (1%)
Strand=Plus/Plus
Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538
||||||||||||||| | || | || || || || || |||||||| |||||||
Sbjct 21618 GCCGCCTCTAAGACGAAGAACAAGGTGCAGGGTTGACTGTTTCTGAATGTTGTAATCTGC 21677
Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598
| || | | ||||||||||| | || |||||||| || | ||| |||| || ||
Sbjct 21678 CAAGGTCCTTCCATCTTCAAGTTGCTCTCCAGCAAATATCAATCTCTGCTGGTTTGGAGG 21737
Query 34599 CACTCCCTCC-TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCC 34656
| |||||| |||||| |||| |||| |||||| | || || ||| |||||
Sbjct 21738 AATACCCTCCTTTGTCTTGGATC-TTTGCTTTAACATTGTTGATAGTATCTGAACTCTCA 21796
Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707
|| |||| || || || || || || || || || ||||| || ||||||
Sbjct 21797 ACCTCCAAAGTAATTGTCTTCCCTGTCAATGTCTTAACAAATATTTGCATG 21847
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 314564700376670
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