Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21]
42,990 sequences; 724,284,658 total letters
Query= NC_028636.1
Length=135952
Score E
Sequences producing significant alignments: (Bits) Value
seq796 136 3e-27
seq545 120 3e-22
seq3956 114 1e-20
seq30006 111 1e-19
seq558 111 1e-19
seq3886 104 2e-17
seq544 96.9 3e-15
>seq796
Length=44438
Score = 136 bits (150), Expect = 3e-27
Identities = 168/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||||| || ||||| || || |||| |||||| | || || ||||| |||||| ||
Sbjct 19517 ATGCAAATCTTTGTGAAGACCTTGACTGGCAAGACAATCACCCTTGAGGTGGAAAGTTCT 19576
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | ||||| | || || |||||||| ||||||||||| || ||||| || ||
Sbjct 19577 GACACCATTGACAATGTTAAGGCCAAAATTCAGGACAAAGAAGGTATTCCACCAGACCAG 19636
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
||| | || || | ||||| || || |||||||| | ||| | |||||||||||
Sbjct 19637 CAGAGGTTGATCTTTGCCGGAAAGCAGTTGGAAGATGGAAGGACATTAGCCGATTACAAC 19696
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|| || |||||||| ||| | || ||||| ||||| | || ||||| ||
Sbjct 19697 ATCCAGAAGGAGTCAACCCTTCACTTGGTCCTGCGTCTCCGAGGTGGAAT 19746
Score = 118 bits (130), Expect = 9e-22
Identities = 164/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||||||||| ||||| || || || ||| | || || ||||| |||||| ||
Sbjct 18605 ATGCAGATATTTGTCAAAACCCTCACTGGAAAGACCATCACCCTTGAGGTGGAAAGCTCA 18664
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | ||||| | || ||| || || || ||||| |||||||| || || || ||
Sbjct 18665 GACACCATTGACAACGTTAAAGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGACCAG 18724
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
||| | | || | || ||||| || | ||||| | ||| | |||||||||||
Sbjct 18725 CAGAGGCTGATCTTTGCGGGCAAGCAGCTTGAAGATGGCCGTACCCTCGCCGATTACAAC 18784
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|||||||| ||||| || | || ||||| | ||| | || ||||| ||
Sbjct 18785 ATTCAAAAAGAGTCCACTCTTCACTTGGTGCTCCGTCTTCGTGGTGGAAT 18834
Score = 116 bits (128), Expect = 3e-21
Identities = 163/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||||| || ||||| || ||| ||||||| ||| | || || ||||| || ||| |||
Sbjct 19061 ATGCAAATTTTTGTGAAGACTTTGACCGGAAAGACCATCACCCTTGAGGTTGAAAGCTCC 19120
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | ||||| | || ||| || || || ||||| |||||||| || || || ||
Sbjct 19121 GACACTATTGACAATGTTAAAGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGACCAG 19180
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
||| | || || | ||||| || || | || ||| | |||| || | |||||||||
Sbjct 19181 CAGAGATTGATCTTTGCCGGAAAGCAGCTTGAGGACGGCAGGACCCTTGCTGATTACAAC 19240
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|| || ||||| || || | || ||||| | ||| | || ||||| ||
Sbjct 19241 ATCCARAAGGAATCAACYCTTCACTTGGTGCTCCGTCTTCGTGGTGGAAT 19290
Score = 100 bits (110), Expect = 2e-16
Identities = 160/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||||| || || || |||||| |||| || ||| | || || ||||| || ||| ||
Sbjct 18833 ATGCAAATTTTCGTGAAAACTTTGACAGGAAAGACCATCACCCTTGAGGTTGAAAGCTCT 18892
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | ||||| | || || || || || ||||| |||||||| || || || ||
Sbjct 18893 GACACCATTGACAATGTTAAGGCTAAGATCCAGGACAAGGAAGGCATTCCCCCAGACCAG 18952
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
||| | || || | || || || || | || ||| | |||| || | |||||||||
Sbjct 18953 CAGAGATTGATCTTTGCGGGAAAGCAGCTTGAGGACGGCAGGACCCTTGCTGATTACAAC 19012
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|| || ||||| || ||| | || ||||| | ||| | || ||||| ||
Sbjct 19013 ATCCAGAAGGAATCAACCCTTCACTTGGTGCTCCGTCTTCGTGGTGGAAT 19062
>seq545
Length=31085
Score = 120 bits (132), Expect = 3e-22
Identities = 164/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||||||||| || || || ||||| ||| | || |||||||| || || ||
Sbjct 1957 ATGCAGATATTTGTTAAGACACTCACCGGAAAGACCATCACTCTTGAGGTCGAGAGTTCT 2016
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | ||||| | |||||| || ||||||||||| |||||||| || || |||||
Sbjct 2017 GACACCATTGATAATGTCAAAGCTAAGATTCAAGACAAGGAAGGCATTCCTCCAGATCAG 2076
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
||| | | || | || || ||||| | ||||| | || || | |||||||||
Sbjct 2077 CAGAGACTGATCTTTGCTGGGAAACAGCTTGAAGATGGCCGAACACTTGCTGATTACAAC 2136
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|| ||||| ||||| ||| | || | || | ||| | || ||||| ||
Sbjct 2137 ATCCAAAAAGAGTCTACCCTTCAYCTTGTCCTCCGTCTACGTGGTGGAAT 2186
Score = 118 bits (130), Expect = 9e-22
Identities = 164/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||||| || ||||| |||||||||||||| ||| |||| |||||||| || || ||
Sbjct 2185 ATGCAAATCTTTGTTAAAACTCTGACCGGGAAGACTATAACTCTTGAGGTCGAGAGCTCA 2244
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | || || | |||||| |||||||||||||| ||||| || || || || ||
Sbjct 2245 GACACCATCGATAATGTCAAAGCTAAAATTCAAGACAAGGAAGGTATTCCCCCAGACCAG 2304
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
||| | | || | || || ||||| | ||||| | || || | |||||||||
Sbjct 2305 CAGAGGCTGATCTTTGCTGGGAAACAGCTTGAAGATGGCCGAACACTTGCTGATTACAAC 2364
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|| ||||| ||||| ||| | || | || | ||| | || ||||| ||
Sbjct 2365 ATCCAAAAAGAGTCTACCCTTCACCTTGTCCTCCGTCTACGTGGTGGAAT 2414
Score = 118 bits (130), Expect = 9e-22
Identities = 145/198 (73%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||||| || ||||| |||||||||||||| ||| |||| |||||||| || || ||
Sbjct 2413 ATGCAAATCTTTGTTAAAACTCTGACCGGGAAGACTATAACTCTTGAGGTCGAGAGCTCA 2472
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | || || | |||||| |||||||||||||| ||||| || || || || ||
Sbjct 2473 GACACCATCGATAATGTCAAAGCTAAAATTCAAGACAAGGAAGGTATTCCCCCAGACCAG 2532
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
||| | | || | || || ||||| | ||||| | || || | |||||||||
Sbjct 2533 CAGAGGCTGATCTTTGCTGGGAAACAGCTTGAAGATGGCCGAACACTTGCTGATTACAAC 2592
Query 27168 ATTCAAAAGGAGTCGACC 27185
|| ||||||||||| |||
Sbjct 2593 ATCCAAAAGGAGTCCACC 2610
Score = 116 bits (128), Expect = 3e-21
Identities = 164/231 (71%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046
|||||| || ||||| || ||| |||| || ||| | ||||| | || || || ||
Sbjct 3096 CATGCAAATTTTTGTCAAGACTTTGACTGGGAAGACAATTACATTGGAGGTTGAGAGTTC 3155
Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106
|| | ||||| | || ||| ||| ||||||||||| || || || || || || ||
Sbjct 3156 AGATACCATTGACAATGTGAAAGCAAAGATTCAAGACAAGGAGGGTATTCCCCCAGACCA 3215
Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166
||||||||| || | || || |||||| | || || | ||| || | || |||||
Sbjct 3216 ACAGCGTTTGATCTTTGCTGGTAAACAACTTGAGGAYGGGAGGACTCTTGCAGACTACAA 3275
Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
||| || |||||||| || | ||| |||| ||||||||| | || || ||
Sbjct 3276 CATCCAGAAGGAGTCAACTCTCCATCTGGTGTTGCGTTTGAGAGGAGGGAT 3326
Score = 113 bits (124), Expect = 4e-20
Identities = 162/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| ||||| || ||| |||| || ||| | || || | || || || ||
Sbjct 3325 ATGCAGATCTTTGTGAAGACTTTGACTGGGAAGACAATCACATTGGAGGTTGAGAGTTCA 3384
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| | ||||| | || ||| ||| ||||||||||| || || || || || || |||
Sbjct 3385 GATACCATTGACAATGTGAAAGCAAAGATTCAAGACAAGGAGGGTATTCCCCCAGACCAA 3444
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|||||||| || | || || ||||| | || || | ||| || | || ||||||
Sbjct 3445 CAGCGTTTGATCTTTGCTGGTAAACAWCTTGAGGAYGGGAGGACTCTTGCAGACTACAAC 3504
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|| || |||||||| || | ||| |||| ||||||||| | || || ||
Sbjct 3505 ATCCAGAAGGAGTCAACTCTCCATCTGGTGTTGCGTTTGAGAGGAGGGAT 3554
>seq3956
Length=148667
Score = 114 bits (126), Expect = 1e-20
Identities = 157/217 (72%), Gaps = 2/217 (1%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGT-C 27046
||||| || ||||| |||||||| | || ||| | |||||||| || ||| || || |
Sbjct 117982 ATGCAAATCTTTGTTAAAACTCTCATTGGAAAGACCATTACTCTGGATGTG-AAGAGTAC 117924
Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106
| |||| ||||| | || ||| ||| ||| ||||||||||||| || || | |||||
Sbjct 117923 CAACTCCATTGACAATGTTAAAGCAAAGATTGAAGACAAAGAAGGAATTCCCTCAGATCA 117864
Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166
||| | ||| |||| | || |||||||| | || | || || | ||||||||
Sbjct 117863 ACAAAGATTAGTATATGGTGGAAAACAATTTAAGGATGATCATACACTTGCTGATTACAA 117804
Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGT 27203
|||||||||||||| || | ||| | || ||| ||
Sbjct 117803 TATTCAAAAGGAGTCTACAATTCATCTTGTCTTGAGT 117767
>seq30006
Length=21699
Score = 111 bits (122), Expect = 1e-19
Identities = 140/191 (73%), Gaps = 1/191 (1%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| || || |||||||| || || ||| | || || |||||||| ||| | |
Sbjct 12704 ATGCAGATCTTCGTGAAAACTCTTACGGGGAAGACGATCACGCTTGAAGTTGAATCAAGC 12763
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | ||||| | |||||| || ||||||||||| ||||| || ||||| || ||
Sbjct 12764 GACACTATTGACAATGTCAAAGCTAAGATTCAAGACAAGGAAGGTATTCCACCGGACCAG 12823
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
||||| || || | |||||| || || | ||||| | || | | |||||||||
Sbjct 12824 CAGCGATTGATCTTCGCCGGAAAGCAGCTCGAAGATGGACGTACTCTAGCTGATTACAAC 12883
Query 27168 ATTCA-AAAGG 27177
||||| |||||
Sbjct 12884 ATTCAGAAAGG 12894
>seq558
Length=67963
Score = 111 bits (122), Expect = 1e-19
Identities = 163/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| ||||| || || ||||| |||||| ||||||| | || || || | ||
Sbjct 17318 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACTATTACCTTAGAGGTAGAGTCATCA 17259
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | ||||| | || || || ||||||||||| |||||||| ||||| || ||
Sbjct 17258 GACACCATTGACAATGTTAAGGCTAAGATTCAAGACAAGGAAGGCATTCCACCAGACCAG 17199
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCG-TTTCCGATTACAA 27166
||||| || || | |||||| || || | || || | ||| || | | || |||||
Sbjct 17198 CAGCGATTGATTTTCGCCGGTAAGCAGCTCGAGGA-TGGCCGAACGCTAGCTGACTACAA 17140
Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214
||| || |||||||| ||| | || | || | ||| | || |||||
Sbjct 17139 CATCCAGAAGGAGTCCACCCTCCACCTTGTCCTCCGTCTCCGTGGTGG 17092
>seq3886
Length=20373
Score = 104 bits (114), Expect = 2e-17
Identities = 161/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| ||||| || || || ||||| ||| | || ||| | || |||||| |||
Sbjct 13453 ATGCAGATTTTTGTGAAGACCCTCACCGGAAAGACCATCACTTTGGAGGTGGAAAGCTCC 13394
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | ||||| | || || || || || ||||| || || || || || || ||
Sbjct 13393 GACACCATTGATAATGTTAAGGCTAAGATCCAGGACAAGGAGGGAATTCCCCCAGACCAG 13334
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
||| | || || | ||| || || || | || ||| | ||| || |||| ||||||
Sbjct 13333 CAGAGGTTGATCTTCGCTGGTAAGCAGCTCGAGGACGGCCGCACCCTTGCCGACTACAAC 13274
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|| || |||||||||||| | || | || | ||| |||| ||||| ||
Sbjct 13273 ATCCAGAAGGAGTCGACCCTTCACCTTGTCCTCCGTCTGCGTGGTGGTAT 13224
>seq544
Length=28317
Score = 96.9 bits (106), Expect = 3e-15
Identities = 162/232 (70%), Gaps = 3/232 (1%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTA--AAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGT 27045
|||||||||||||| || || || | ||| ||| | || |||||||| || || |
Sbjct 22446 ATGCAGATATTTGTTTTAAGACGCTCATCGGAAAGACCATCACTCTTGAGGTCGAGAGCT 22387
Query 27046 CCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATC 27105
| ||| | ||||| | || ||| || ||||||||||| |||||||| || || ||||
Sbjct 22386 CTGACACTATTGATAATGTAAAAGCTAAGATTCAAGACAAGGAAGGCATTCCTCCAGATC 22327
Query 27106 AACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACA 27165
| | | | || || | || || ||||| | ||||| | || || | |||||||
Sbjct 22326 AGCGGAGGTTGATCTTTGCTGGGAAACAGCTTGAAGATGGCCAAACAATTGCTGATTACA 22267
Query 27166 ACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|||| ||| | ||||| ||| | ||| | || | ||| | || ||||| ||
Sbjct 22266 ACATCCAAGACGAGTCTACC-TCCATCTTGTCCTCCGTCTACGTGGTGGAAT 22216
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 434684685724800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |