Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21] 42,990 sequences; 724,284,658 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq796 136 3e-27 seq545 120 3e-22 seq3956 114 1e-20 seq30006 111 1e-19 seq558 111 1e-19 seq3886 104 2e-17 seq544 96.9 3e-15 >seq796 Length=44438 Score = 136 bits (150), Expect = 3e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || || |||| |||||| | || || ||||| |||||| || Sbjct 19517 ATGCAAATCTTTGTGAAGACCTTGACTGGCAAGACAATCACCCTTGAGGTGGAAAGTTCT 19576 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || |||||||| ||||||||||| || ||||| || || Sbjct 19577 GACACCATTGACAATGTTAAGGCCAAAATTCAGGACAAAGAAGGTATTCCACCAGACCAG 19636 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | ||||| || || |||||||| | ||| | ||||||||||| Sbjct 19637 CAGAGGTTGATCTTTGCCGGAAAGCAGTTGGAAGATGGAAGGACATTAGCCGATTACAAC 19696 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| ||| | || ||||| ||||| | || ||||| || Sbjct 19697 ATCCAGAAGGAGTCAACCCTTCACTTGGTCCTGCGTCTCCGAGGTGGAAT 19746 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||||||||| ||||| || || || ||| | || || ||||| |||||| || Sbjct 18605 ATGCAGATATTTGTCAAAACCCTCACTGGAAAGACCATCACCCTTGAGGTGGAAAGCTCA 18664 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || ||| || || || ||||| |||||||| || || || || Sbjct 18665 GACACCATTGACAACGTTAAAGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGACCAG 18724 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || ||||| || | ||||| | ||| | ||||||||||| Sbjct 18725 CAGAGGCTGATCTTTGCGGGCAAGCAGCTTGAAGATGGCCGTACCCTCGCCGATTACAAC 18784 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||| ||||| || | || ||||| | ||| | || ||||| || Sbjct 18785 ATTCAAAAAGAGTCCACTCTTCACTTGGTGCTCCGTCTTCGTGGTGGAAT 18834 Score = 116 bits (128), Expect = 3e-21 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || ||| ||||||| ||| | || || ||||| || ||| ||| Sbjct 19061 ATGCAAATTTTTGTGAAGACTTTGACCGGAAAGACCATCACCCTTGAGGTTGAAAGCTCC 19120 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || ||| || || || ||||| |||||||| || || || || Sbjct 19121 GACACTATTGACAATGTTAAAGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGACCAG 19180 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | ||||| || || | || ||| | |||| || | ||||||||| Sbjct 19181 CAGAGATTGATCTTTGCCGGAAAGCAGCTTGAGGACGGCAGGACCCTTGCTGATTACAAC 19240 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || ||||| || || | || ||||| | ||| | || ||||| || Sbjct 19241 ATCCARAAGGAATCAACYCTTCACTTGGTGCTCCGTCTTCGTGGTGGAAT 19290 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || |||||| |||| || ||| | || || ||||| || ||| || Sbjct 18833 ATGCAAATTTTCGTGAAAACTTTGACAGGAAAGACCATCACCCTTGAGGTTGAAAGCTCT 18892 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || || || || ||||| |||||||| || || || || Sbjct 18893 GACACCATTGACAATGTTAAGGCTAAGATCCAGGACAAGGAAGGCATTCCCCCAGACCAG 18952 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | || || || || | || ||| | |||| || | ||||||||| Sbjct 18953 CAGAGATTGATCTTTGCGGGAAAGCAGCTTGAGGACGGCAGGACCCTTGCTGATTACAAC 19012 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || ||||| || ||| | || ||||| | ||| | || ||||| || Sbjct 19013 ATCCAGAAGGAATCAACCCTTCACTTGGTGCTCCGTCTTCGTGGTGGAAT 19062 >seq545 Length=31085 Score = 120 bits (132), Expect = 3e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||||||||| || || || ||||| ||| | || |||||||| || || || Sbjct 1957 ATGCAGATATTTGTTAAGACACTCACCGGAAAGACCATCACTCTTGAGGTCGAGAGTTCT 2016 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | |||||| || ||||||||||| |||||||| || || ||||| Sbjct 2017 GACACCATTGATAATGTCAAAGCTAAGATTCAAGACAAGGAAGGCATTCCTCCAGATCAG 2076 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || || ||||| | ||||| | || || | ||||||||| Sbjct 2077 CAGAGACTGATCTTTGCTGGGAAACAGCTTGAAGATGGCCGAACACTTGCTGATTACAAC 2136 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || ||||| ||||| ||| | || | || | ||| | || ||||| || Sbjct 2137 ATCCAAAAAGAGTCTACCCTTCAYCTTGTCCTCCGTCTACGTGGTGGAAT 2186 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| |||||||||||||| ||| |||| |||||||| || || || Sbjct 2185 ATGCAAATCTTTGTTAAAACTCTGACCGGGAAGACTATAACTCTTGAGGTCGAGAGCTCA 2244 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | |||||| |||||||||||||| ||||| || || || || || Sbjct 2245 GACACCATCGATAATGTCAAAGCTAAAATTCAAGACAAGGAAGGTATTCCCCCAGACCAG 2304 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || || ||||| | ||||| | || || | ||||||||| Sbjct 2305 CAGAGGCTGATCTTTGCTGGGAAACAGCTTGAAGATGGCCGAACACTTGCTGATTACAAC 2364 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || ||||| ||||| ||| | || | || | ||| | || ||||| || Sbjct 2365 ATCCAAAAAGAGTCTACCCTTCACCTTGTCCTCCGTCTACGTGGTGGAAT 2414 Score = 118 bits (130), Expect = 9e-22 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| |||||||||||||| ||| |||| |||||||| || || || Sbjct 2413 ATGCAAATCTTTGTTAAAACTCTGACCGGGAAGACTATAACTCTTGAGGTCGAGAGCTCA 2472 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | |||||| |||||||||||||| ||||| || || || || || Sbjct 2473 GACACCATCGATAATGTCAAAGCTAAAATTCAAGACAAGGAAGGTATTCCCCCAGACCAG 2532 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || || ||||| | ||||| | || || | ||||||||| Sbjct 2533 CAGAGGCTGATCTTTGCTGGGAAACAGCTTGAAGATGGCCGAACACTTGCTGATTACAAC 2592 Query 27168 ATTCAAAAGGAGTCGACC 27185 || ||||||||||| ||| Sbjct 2593 ATCCAAAAGGAGTCCACC 2610 Score = 116 bits (128), Expect = 3e-21 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || ||||| || ||| |||| || ||| | ||||| | || || || || Sbjct 3096 CATGCAAATTTTTGTCAAGACTTTGACTGGGAAGACAATTACATTGGAGGTTGAGAGTTC 3155 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || | ||||| | || ||| ||| ||||||||||| || || || || || || || Sbjct 3156 AGATACCATTGACAATGTGAAAGCAAAGATTCAAGACAAGGAGGGTATTCCCCCAGACCA 3215 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||||||| || | || || |||||| | || || | ||| || | || ||||| Sbjct 3216 ACAGCGTTTGATCTTTGCTGGTAAACAACTTGAGGAYGGGAGGACTCTTGCAGACTACAA 3275 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || |||||||| || | ||| |||| ||||||||| | || || || Sbjct 3276 CATCCAGAAGGAGTCAACTCTCCATCTGGTGTTGCGTTTGAGAGGAGGGAT 3326 Score = 113 bits (124), Expect = 4e-20 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || ||| |||| || ||| | || || | || || || || Sbjct 3325 ATGCAGATCTTTGTGAAGACTTTGACTGGGAAGACAATCACATTGGAGGTTGAGAGTTCA 3384 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || ||| ||| ||||||||||| || || || || || || ||| Sbjct 3385 GATACCATTGACAATGTGAAAGCAAAGATTCAAGACAAGGAGGGTATTCCCCCAGACCAA 3444 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||||| || | || || ||||| | || || | ||| || | || |||||| Sbjct 3445 CAGCGTTTGATCTTTGCTGGTAAACAWCTTGAGGAYGGGAGGACTCTTGCAGACTACAAC 3504 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| || | ||| |||| ||||||||| | || || || Sbjct 3505 ATCCAGAAGGAGTCAACTCTCCATCTGGTGTTGCGTTTGAGAGGAGGGAT 3554 >seq3956 Length=148667 Score = 114 bits (126), Expect = 1e-20 Identities = 157/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGT-C 27046 ||||| || ||||| |||||||| | || ||| | |||||||| || ||| || || | Sbjct 117982 ATGCAAATCTTTGTTAAAACTCTCATTGGAAAGACCATTACTCTGGATGTG-AAGAGTAC 117924 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 | |||| ||||| | || ||| ||| ||| ||||||||||||| || || | ||||| Sbjct 117923 CAACTCCATTGACAATGTTAAAGCAAAGATTGAAGACAAAGAAGGAATTCCCTCAGATCA 117864 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | ||| |||| | || |||||||| | || | || || | |||||||| Sbjct 117863 ACAAAGATTAGTATATGGTGGAAAACAATTTAAGGATGATCATACACTTGCTGATTACAA 117804 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGT 27203 |||||||||||||| || | ||| | || ||| || Sbjct 117803 TATTCAAAAGGAGTCTACAATTCATCTTGTCTTGAGT 117767 >seq30006 Length=21699 Score = 111 bits (122), Expect = 1e-19 Identities = 140/191 (73%), Gaps = 1/191 (1%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || |||||||| || || ||| | || || |||||||| ||| | | Sbjct 12704 ATGCAGATCTTCGTGAAAACTCTTACGGGGAAGACGATCACGCTTGAAGTTGAATCAAGC 12763 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | |||||| || ||||||||||| ||||| || ||||| || || Sbjct 12764 GACACTATTGACAATGTCAAAGCTAAGATTCAAGACAAGGAAGGTATTCCACCGGACCAG 12823 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| || || | |||||| || || | ||||| | || | | ||||||||| Sbjct 12824 CAGCGATTGATCTTCGCCGGAAAGCAGCTCGAAGATGGACGTACTCTAGCTGATTACAAC 12883 Query 27168 ATTCA-AAAGG 27177 ||||| ||||| Sbjct 12884 ATTCAGAAAGG 12894 >seq558 Length=67963 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || ||||| |||||| ||||||| | || || || | || Sbjct 17318 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACTATTACCTTAGAGGTAGAGTCATCA 17259 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || || ||||||||||| |||||||| ||||| || || Sbjct 17258 GACACCATTGACAATGTTAAGGCTAAGATTCAAGACAAGGAAGGCATTCCACCAGACCAG 17199 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCG-TTTCCGATTACAA 27166 ||||| || || | |||||| || || | || || | ||| || | | || ||||| Sbjct 17198 CAGCGATTGATTTTCGCCGGTAAGCAGCTCGAGGA-TGGCCGAACGCTAGCTGACTACAA 17140 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||| || |||||||| ||| | || | || | ||| | || ||||| Sbjct 17139 CATCCAGAAGGAGTCCACCCTCCACCTTGTCCTCCGTCTCCGTGGTGG 17092 >seq3886 Length=20373 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || || ||||| ||| | || ||| | || |||||| ||| Sbjct 13453 ATGCAGATTTTTGTGAAGACCCTCACCGGAAAGACCATCACTTTGGAGGTGGAAAGCTCC 13394 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || || || || ||||| || || || || || || || Sbjct 13393 GACACCATTGATAATGTTAAGGCTAAGATCCAGGACAAGGAGGGAATTCCCCCAGACCAG 13334 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | ||| || || || | || ||| | ||| || |||| |||||| Sbjct 13333 CAGAGGTTGATCTTCGCTGGTAAGCAGCTCGAGGACGGCCGCACCCTTGCCGACTACAAC 13274 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||||||| | || | || | ||| |||| ||||| || Sbjct 13273 ATCCAGAAGGAGTCGACCCTTCACCTTGTCCTCCGTCTGCGTGGTGGTAT 13224 >seq544 Length=28317 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/232 (70%), Gaps = 3/232 (1%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTA--AAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGT 27045 |||||||||||||| || || || | ||| ||| | || |||||||| || || | Sbjct 22446 ATGCAGATATTTGTTTTAAGACGCTCATCGGAAAGACCATCACTCTTGAGGTCGAGAGCT 22387 Query 27046 CCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATC 27105 | ||| | ||||| | || ||| || ||||||||||| |||||||| || || |||| Sbjct 22386 CTGACACTATTGATAATGTAAAAGCTAAGATTCAAGACAAGGAAGGCATTCCTCCAGATC 22327 Query 27106 AACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACA 27165 | | | | || || | || || ||||| | ||||| | || || | ||||||| Sbjct 22326 AGCGGAGGTTGATCTTTGCTGGGAAACAGCTTGAAGATGGCCAAACAATTGCTGATTACA 22267 Query 27166 ACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||| ||| | ||||| ||| | ||| | || | ||| | || ||||| || Sbjct 22266 ACATCCAAGACGAGTCTACC-TCCATCTTGTCCTCCGTCTACGTGGTGGAAT 22216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434684685724800