Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21] 42,990 sequences; 724,284,658 total letters Query= NC_028663.1 Length=188632 Score E Sequences producing significant alignments: (Bits) Value seq11014 150 2e-31 seq20193 138 1e-27 seq31657 132 6e-26 seq25757 120 4e-22 seq24530 109 7e-19 seq20218 109 7e-19 seq46 105 8e-18 seq3149 89.7 6e-13 seq15728 87.8 2e-12 seq17608 84.2 3e-11 >seq11014 Length=29319 Score = 150 bits (166), Expect = 2e-31 Identities = 269/393 (68%), Gaps = 2/393 (1%) Strand=Plus/Plus Query 176147 TTTACGTTGGTTGGTTTGGTGTGCTCATGATTCCATGTCTGCTCACTGCTGCAGCATGT- 176205 ||||| |||| |||||||||| | ||||| || | | || || | | ||| Sbjct 10070 TTTACATTGGACGGTTTGGTGTTTTGATGATCCCTACCTTATTGACGGCWACTTC-TGTA 10128 Query 176206 TTTATCGTTGCATTTATTGCAGCACCACCTGTCGATATCGACGGTATTCGCGAACCAGTA 176265 ||||| |||| || |||| || || || || || || || |||||| | ||||| || Sbjct 10129 TTTATTATTGCCTTCATTGTTGCTCCTCCAGTAGACATTGATGGTATTGGTGAACCTGTT 10188 Query 176266 GCAGGATCTCTACTCTATGGAAACAACATCATCTCAGGAGCAGTCGTCCCAAGCTCAAAC 176325 |||| |||||||| || ||||||||||| || || || || | | || | || Sbjct 10189 TCAGGGTCTCTACTTTACGGAAACAACATTATTTCCGGTGCCATTATTCCTACTTCTGCA 10248 Query 176326 GCAATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTAC 176385 || || || |||| || ||||||||||||||||| ||| | ||||| |||||| | | | Sbjct 10249 GCTATAGGTTTACATTTTTACCCAATCTGGGAAGCGGCATCCGTTGATGAATGGTTATTC 10308 Query 176386 AATGGAGGACCATACCAACTCGTTGTATTCCACTTCCTTATCGGTATCTCAGCTTACATG 176445 || || || || || |||| |||| | |||||| | | || | | ||||||| Sbjct 10309 AACGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGCGTAGCTTGTTACATG 10368 Query 176446 GGACGCCAATGGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCATAC 176505 || | | ||||| ||||| | | | | || ||||| |||||||| ||||||||| Sbjct 10369 GGTCRTGAGTGGGAGCTTAGCTTCCGTSTRGGTATGCGACCTTGGATTGCTGTTGCATAT 10428 Query 176506 TCTGCACCAGTATCTGCAGCGATGGCAGTTTTC 176538 || || | || | | || | ||||||||| Sbjct 10429 TCAGCTCTTGTTGCAGTTGCTACCGCAGTTTTC 10461 >seq20193 Length=7469 Score = 138 bits (152), Expect = 1e-27 Identities = 298/448 (67%), Gaps = 32/448 (7%) Strand=Plus/Minus Query 176147 TTTACGTTGGTTGGTTTGGTGTGCTCATGATTCCATGTCTGC-TCACTG-CTGCAGCATG 176204 ||||| |||| ||||||||||| | ||||| ||| | | | || | ||| | | Sbjct 6803 TTTACATTGGATGGTTTGGTGTTTTGATGATC-----TCTACCTTATTGACGGCAACTTY 6749 Query 176205 T---TTTATCGTTGCATTTATTGCAGCACCACCTGTCGATATCGACGGTATTCGCGAACC 176261 | ||||| |||| || ||||| || || || || || || || |||||||| ||||| Sbjct 6748 TGTATTTATTATTGCCTTCATTGCTGCTCCTCCAGTAGACATTGATGGTATTCGTGAACC 6689 Query 176262 AGTAGCAGGATCTCTACTCTATGGAAACAACATCATCTCAGGAGCAGTCGTCCCAAGCTC 176321 || |||| |||||||| | ||||||||||| || || || || | | || | || Sbjct 6688 TGTTTCAGGGTCTCTACTTHACGGAAACAACATTATTTCCGGTGCCATTATTCCTACTTC 6629 Query 176322 AAACGCAATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCT 176381 || || || |||| || ||||||||||||||||| || | ||||| |||||| | Sbjct 6628 TGCAGCTATAGGTTTACATTTTTACCCAATCTGGGAAGCGACATCCGTTGATGAATGGTT 6569 Query 176382 CTACAATGGAGGACCATACCAACTCGTTGTATTCCACTTCCTTATCGGTATCTCAGCTTA 176441 ||||| | || || || |||| |||| | |||||| | | || | | ||| Sbjct 6568 ATACAACGRTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGCGTAGCTTGTTA 6509 Query 176442 CATGGGACGCCAATGGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGAT--CTG---- 176495 |||||| || | ||||| ||||| | | || || |||| |||||||| ||| Sbjct 6508 CATGGGTCGTGAGTGGGAGCTTAGCTTCCATCTGGGTATGCAACCTTGGATTGCTGGGTA 6449 Query 176496 ----------------TGTTGCATACTCTGCACCAGTATCTGCAGCGATGGCAGTTTTCC 176539 ||||||||| || || || || | || || | ||||||||| Sbjct 6448 TGCAACTTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACCGCAGTTTTCT 6389 Query 176540 TCGTCTATCCATTCGGTCAAGGATCTTT 176567 | |||| ||| | ||||||| || ||| Sbjct 6388 TAATCTACCCAATTGGTCAAGTATTTTT 6361 >seq31657 Length=14304 Score = 132 bits (146), Expect = 6e-26 Identities = 108/132 (82%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 176530 GCAGTTTTCCTCGTCTATCCATTCGGTCAAGGATCTTTCTCTGATGGTATGCCTCTTGGC 176589 ||||||||| | |||| ||| ||||||||||| ||| ||||||||||||||||| || Sbjct 297 GCAGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGA 356 Query 176590 ATTTCAGGTACATTCAACTTTATGTTTGTATTCCAAGCAGAGCACAACATTCTAATGCAC 176649 || || ||||| ||||| || ||| || ||||||| || || |||||||| || |||||| Sbjct 357 ATCTCTGGTACTTTCAATTTCATGATTVTATTCCAGGCTGAACACAACATCCTTATGCAC 416 Query 176650 CCATTCCATATG 176661 ||||| || ||| Sbjct 417 CCATTTCACATG 428 >seq25757 Length=3733 Score = 120 bits (132), Expect = 4e-22 Identities = 124/160 (78%), Gaps = 2/160 (1%) Strand=Plus/Plus Query 176941 ATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCTTAGACAACTCTG-GTAA 176999 ||||| |||||||| || |||||||| ||||| || ||||| | |||| || | || Sbjct 3563 ATGGCTTTCAACCTAAATGGTTTCAATTTCAATCAATCTGTAGTTGACAG-TCAGAGTCG 3621 Query 177000 AGTGATTCCTACATGGGGAGATATCCTTAACCGTGCAAACCTTGGTATGGAAGTTATGCA 177059 || ||| || ||| ||||| || ||||| ||||||||||||||||||||||| Sbjct 3622 TGTAATTAACACTTGGACTGATATATATATACGTGCTAACCTTGGTATGGAAGTTATGCA 3681 Query 177060 CGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCT 177099 || ||||||||||| |||||||| || ||||| |||||| Sbjct 3682 TGAACGTAATGCTCATAACTTCCCTCTAGACCTAGCTGCT 3721 >seq24530 Length=26533 Score = 109 bits (120), Expect = 7e-19 Identities = 187/272 (69%), Gaps = 0/272 (0%) Strand=Plus/Minus Query 176596 GGTACATTCAACTTTATGTTTGTATTCCAAGCAGAGCACAACATTCTAATGCACCCATTC 176655 ||||| ||||| || ||| |||||||||| || || |||||||| || ||||||||||| Sbjct 795 GGTACTTTCAATTTCATGATTGTATTCCAGGCTGAVCACAACATCCTTATGCACCCATTT 736 Query 176656 CATATGCTTGGAGTAGCAGGTGTGTTTGGTGGATCTCTTTTCTCAGCAATGCACGGAAGT 176715 || || | || |||| ||||| | || || || ||| | ||||| | Sbjct 735 CACATCTTAGGCCTAGCTGGTGTAAAATGCGGCTCCCTATTCAGTACTATGCATGCTTCA 676 Query 176716 CTTGTTACTTCTTCACTTGTTAGAGAGACAACCGAAAACGAATCACAAAACTACGGTTAC 176775 |||| |||||| || | || || | || |||| ||||| || | |||||| Sbjct 675 TTTGTAACTTCTAGTTTTATAAGGGAAAGCACATAAAATGAATCTGCTAATGAAGGTTAC 616 Query 176776 AAATTCGGACAAGAAGAAGAGACATACAACATTGTAGCTGCACACGGTTACTTTGGTCGT 176835 | ||||| ||||| ||||| || || || || ||||| | || | ||| ||||| | Sbjct 615 AGATTCGATCAAGAGGAAGAAACTTAGAATATCGTAGCCGATCATGCTTATTTTGGCTGA 556 Query 176836 CTTATCTTCCAGTATGCTTCTTTCAATAACTC 176867 | |||||||| |||| | ||| || ||||| Sbjct 555 TTGATCTTCCAATATGATAGTTTTAACAACTC 524 >seq20218 Length=9351 Score = 109 bits (120), Expect = 7e-19 Identities = 78/90 (87%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 177010 ACATGGGGAGATATCCTTAACCGTGCAAACCTTGGTATGGAAGTTATGCACGAGCGTAAT 177069 || |||| |||||| | |||||||| ||||||||||||||||||||||| || |||||| Sbjct 2122 ACTTGGGTTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 2181 Query 177070 GCTCACAACTTCCCACTTGACCTTGCTGCT 177099 ||||| |||||||| || ||||| |||||| Sbjct 2182 GCTCATAACTTCCCTCTAGACCTAGCTGCT 2211 >seq46 Length=65133 Score = 105 bits (116), Expect = 8e-18 Identities = 142/195 (73%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 176878 CACTTCTTCCTTGCAGCATTCCCAGTTGTTTGCATCTGGTTTACTGCAATGGGTGTTTGC 176937 |||||||||| || || | || || || | ||||||||||| || | ||| | || Sbjct 51964 CACTTCTTCCGAGCTGCTTGGCCCGTAGTAGGTATCTGGTTTACCGCTTTAGGTATCAGC 52023 Query 176938 ACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCTTAGACAACTCTG-G 176996 | |||| |||| ||| || |||||||| |||||||| ||||| | || | || | | Sbjct 52024 GCTATGGGTTTCACCCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGA-TAGTCAGTG 52082 Query 176997 TAAAGTGATTCCTACATGGGGAGA----TATCCTTAACCGTGCAAACCTTGGTATGGAAG 177052 | | || ||| || |||| || |||| | |||||||| |||||||||||||||| Sbjct 52083 TCATGTAATTAACACTTGGGCCGATATGTATCATCAACCGTGCTAACCTTGGTATGGAAG 52142 Query 177053 TTATGCACGAGCGTA 177067 ||||||| || |||| Sbjct 52143 TTATGCATGAACGTA 52157 >seq3149 Length=150756 Score = 89.7 bits (98), Expect = 6e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 176530 GCAGTTTTCCTCGTCTATCCATTCGGTCAAGGATCTTTCTCTGATGGTATGCCTCTTGGC 176589 ||||| ||| | |||| ||| ||||| ||||| ||| ||||||||||||||||| || Sbjct 11598 GCAGTATTCTTGATCTACCCAATCGGTTAAGGAAGTTTTTCTGATGGTATGCCTCTAGGA 11657 Query 176590 ATTTCAGGTACATTCAACTTTATGTTTGTATTCCAAGCA 176628 || || ||||| ||||| | ||| ||||||||||| || Sbjct 11658 ATCTCTGGTACTTTCAATTACATGATTGTATTCCAACCA 11696 >seq15728 Length=57915 Score = 87.8 bits (96), Expect = 2e-12 Identities = 166/242 (69%), Gaps = 3/242 (1%) Strand=Plus/Plus Query 176741 AGACAACCGAAAA--CGAATCACAAAACTACGGTTACAAATTCGGACAAGAAGAAGAGAC 176798 || |||| ||||| ||||||| || | |||||| |||| | ||||| ||| | || Sbjct 13100 AGCCAACAGAAAAGTCGAATCATCGAATGAATGTTACATATTCTGTCAAGAGGAAAAAAC 13159 Query 176799 ATACAACATTGTAGCTGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTT 176858 || || ||||||| | || ||||| ||||| | | |||| || |||| | ||| Sbjct 13160 TTATAATATTGTAGTCGTTCATGGTTATTTTGGCTGATTGATCTACCGATATGTTAGTTT 13219 Query 176859 CAATAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCAGTTGTTTGCATCTGGTT 176918 |||| |||| | | |||||||||||||| || | | | || | |||||||| Sbjct 13220 CAATGACTCTCGTTCGTTACACTTCTTCCTTGCTGCTTGGCATATAGTAGGTATCTGGTT 13279 Query 176919 TACTGC-AATGGGTGTTTGCACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGT 176977 ||| | | ||| || |||||||| ||||| || || |||||| |||| ||| | Sbjct 13280 TACCACTTTTAGGTATTAGCACAATGCTTTTCAATCTAAAAAATTTCAATTTCAGCCAAT 13339 Query 176978 CT 176979 || Sbjct 13340 CT 13341 >seq17608 Length=53485 Score = 84.2 bits (92), Expect = 3e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 19485 GACTTTGGAGCATGTATTTTCTGCGGTAACTGCGTAGAGTATTGCCCAACAAACTGTCTA 19544 || |||||| ||||| || || ||||| ||||| ||||||||||||||||| ||| || Sbjct 17726 GATTTTGGAATCTGTATATTTTGTGGTAATTGCGTTGAGTATTGCCCAACAAATTGTTTA 17667 Query 19545 TCCATGACAGAAGAATATGAATTGGCTAC 19573 || ||||| ||||||| |||| | |||| Sbjct 17666 TCAATGACCGAAGAATCTGAACTTTCTAC 17638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603170097196800