Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21]
42,990 sequences; 724,284,658 total letters
Query= NC_028663.1
Length=188632
Score E
Sequences producing significant alignments: (Bits) Value
seq11014 150 2e-31
seq20193 138 1e-27
seq31657 132 6e-26
seq25757 120 4e-22
seq24530 109 7e-19
seq20218 109 7e-19
seq46 105 8e-18
seq3149 89.7 6e-13
seq15728 87.8 2e-12
seq17608 84.2 3e-11
>seq11014
Length=29319
Score = 150 bits (166), Expect = 2e-31
Identities = 269/393 (68%), Gaps = 2/393 (1%)
Strand=Plus/Plus
Query 176147 TTTACGTTGGTTGGTTTGGTGTGCTCATGATTCCATGTCTGCTCACTGCTGCAGCATGT- 176205
||||| |||| |||||||||| | ||||| || | | || || | | |||
Sbjct 10070 TTTACATTGGACGGTTTGGTGTTTTGATGATCCCTACCTTATTGACGGCWACTTC-TGTA 10128
Query 176206 TTTATCGTTGCATTTATTGCAGCACCACCTGTCGATATCGACGGTATTCGCGAACCAGTA 176265
||||| |||| || |||| || || || || || || || |||||| | ||||| ||
Sbjct 10129 TTTATTATTGCCTTCATTGTTGCTCCTCCAGTAGACATTGATGGTATTGGTGAACCTGTT 10188
Query 176266 GCAGGATCTCTACTCTATGGAAACAACATCATCTCAGGAGCAGTCGTCCCAAGCTCAAAC 176325
|||| |||||||| || ||||||||||| || || || || | | || | ||
Sbjct 10189 TCAGGGTCTCTACTTTACGGAAACAACATTATTTCCGGTGCCATTATTCCTACTTCTGCA 10248
Query 176326 GCAATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTAC 176385
|| || || |||| || ||||||||||||||||| ||| | ||||| |||||| | | |
Sbjct 10249 GCTATAGGTTTACATTTTTACCCAATCTGGGAAGCGGCATCCGTTGATGAATGGTTATTC 10308
Query 176386 AATGGAGGACCATACCAACTCGTTGTATTCCACTTCCTTATCGGTATCTCAGCTTACATG 176445
|| || || || || |||| |||| | |||||| | | || | | |||||||
Sbjct 10309 AACGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGCGTAGCTTGTTACATG 10368
Query 176446 GGACGCCAATGGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCATAC 176505
|| | | ||||| ||||| | | | | || ||||| |||||||| |||||||||
Sbjct 10369 GGTCRTGAGTGGGAGCTTAGCTTCCGTSTRGGTATGCGACCTTGGATTGCTGTTGCATAT 10428
Query 176506 TCTGCACCAGTATCTGCAGCGATGGCAGTTTTC 176538
|| || | || | | || | |||||||||
Sbjct 10429 TCAGCTCTTGTTGCAGTTGCTACCGCAGTTTTC 10461
>seq20193
Length=7469
Score = 138 bits (152), Expect = 1e-27
Identities = 298/448 (67%), Gaps = 32/448 (7%)
Strand=Plus/Minus
Query 176147 TTTACGTTGGTTGGTTTGGTGTGCTCATGATTCCATGTCTGC-TCACTG-CTGCAGCATG 176204
||||| |||| ||||||||||| | ||||| ||| | | | || | ||| | |
Sbjct 6803 TTTACATTGGATGGTTTGGTGTTTTGATGATC-----TCTACCTTATTGACGGCAACTTY 6749
Query 176205 T---TTTATCGTTGCATTTATTGCAGCACCACCTGTCGATATCGACGGTATTCGCGAACC 176261
| ||||| |||| || ||||| || || || || || || || |||||||| |||||
Sbjct 6748 TGTATTTATTATTGCCTTCATTGCTGCTCCTCCAGTAGACATTGATGGTATTCGTGAACC 6689
Query 176262 AGTAGCAGGATCTCTACTCTATGGAAACAACATCATCTCAGGAGCAGTCGTCCCAAGCTC 176321
|| |||| |||||||| | ||||||||||| || || || || | | || | ||
Sbjct 6688 TGTTTCAGGGTCTCTACTTHACGGAAACAACATTATTTCCGGTGCCATTATTCCTACTTC 6629
Query 176322 AAACGCAATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCT 176381
|| || || |||| || ||||||||||||||||| || | ||||| |||||| |
Sbjct 6628 TGCAGCTATAGGTTTACATTTTTACCCAATCTGGGAAGCGACATCCGTTGATGAATGGTT 6569
Query 176382 CTACAATGGAGGACCATACCAACTCGTTGTATTCCACTTCCTTATCGGTATCTCAGCTTA 176441
||||| | || || || |||| |||| | |||||| | | || | | |||
Sbjct 6568 ATACAACGRTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGCGTAGCTTGTTA 6509
Query 176442 CATGGGACGCCAATGGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGAT--CTG---- 176495
|||||| || | ||||| ||||| | | || || |||| |||||||| |||
Sbjct 6508 CATGGGTCGTGAGTGGGAGCTTAGCTTCCATCTGGGTATGCAACCTTGGATTGCTGGGTA 6449
Query 176496 ----------------TGTTGCATACTCTGCACCAGTATCTGCAGCGATGGCAGTTTTCC 176539
||||||||| || || || || | || || | |||||||||
Sbjct 6448 TGCAACTTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACCGCAGTTTTCT 6389
Query 176540 TCGTCTATCCATTCGGTCAAGGATCTTT 176567
| |||| ||| | ||||||| || |||
Sbjct 6388 TAATCTACCCAATTGGTCAAGTATTTTT 6361
>seq31657
Length=14304
Score = 132 bits (146), Expect = 6e-26
Identities = 108/132 (82%), Gaps = 0/132 (0%)
Strand=Plus/Plus
Query 176530 GCAGTTTTCCTCGTCTATCCATTCGGTCAAGGATCTTTCTCTGATGGTATGCCTCTTGGC 176589
||||||||| | |||| ||| ||||||||||| ||| ||||||||||||||||| ||
Sbjct 297 GCAGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGA 356
Query 176590 ATTTCAGGTACATTCAACTTTATGTTTGTATTCCAAGCAGAGCACAACATTCTAATGCAC 176649
|| || ||||| ||||| || ||| || ||||||| || || |||||||| || ||||||
Sbjct 357 ATCTCTGGTACTTTCAATTTCATGATTVTATTCCAGGCTGAACACAACATCCTTATGCAC 416
Query 176650 CCATTCCATATG 176661
||||| || |||
Sbjct 417 CCATTTCACATG 428
>seq25757
Length=3733
Score = 120 bits (132), Expect = 4e-22
Identities = 124/160 (78%), Gaps = 2/160 (1%)
Strand=Plus/Plus
Query 176941 ATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCTTAGACAACTCTG-GTAA 176999
||||| |||||||| || |||||||| ||||| || ||||| | |||| || | ||
Sbjct 3563 ATGGCTTTCAACCTAAATGGTTTCAATTTCAATCAATCTGTAGTTGACAG-TCAGAGTCG 3621
Query 177000 AGTGATTCCTACATGGGGAGATATCCTTAACCGTGCAAACCTTGGTATGGAAGTTATGCA 177059
|| ||| || ||| ||||| || ||||| |||||||||||||||||||||||
Sbjct 3622 TGTAATTAACACTTGGACTGATATATATATACGTGCTAACCTTGGTATGGAAGTTATGCA 3681
Query 177060 CGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCT 177099
|| ||||||||||| |||||||| || ||||| ||||||
Sbjct 3682 TGAACGTAATGCTCATAACTTCCCTCTAGACCTAGCTGCT 3721
>seq24530
Length=26533
Score = 109 bits (120), Expect = 7e-19
Identities = 187/272 (69%), Gaps = 0/272 (0%)
Strand=Plus/Minus
Query 176596 GGTACATTCAACTTTATGTTTGTATTCCAAGCAGAGCACAACATTCTAATGCACCCATTC 176655
||||| ||||| || ||| |||||||||| || || |||||||| || |||||||||||
Sbjct 795 GGTACTTTCAATTTCATGATTGTATTCCAGGCTGAVCACAACATCCTTATGCACCCATTT 736
Query 176656 CATATGCTTGGAGTAGCAGGTGTGTTTGGTGGATCTCTTTTCTCAGCAATGCACGGAAGT 176715
|| || | || |||| ||||| | || || || ||| | ||||| |
Sbjct 735 CACATCTTAGGCCTAGCTGGTGTAAAATGCGGCTCCCTATTCAGTACTATGCATGCTTCA 676
Query 176716 CTTGTTACTTCTTCACTTGTTAGAGAGACAACCGAAAACGAATCACAAAACTACGGTTAC 176775
|||| |||||| || | || || | || |||| ||||| || | ||||||
Sbjct 675 TTTGTAACTTCTAGTTTTATAAGGGAAAGCACATAAAATGAATCTGCTAATGAAGGTTAC 616
Query 176776 AAATTCGGACAAGAAGAAGAGACATACAACATTGTAGCTGCACACGGTTACTTTGGTCGT 176835
| ||||| ||||| ||||| || || || || ||||| | || | ||| ||||| |
Sbjct 615 AGATTCGATCAAGAGGAAGAAACTTAGAATATCGTAGCCGATCATGCTTATTTTGGCTGA 556
Query 176836 CTTATCTTCCAGTATGCTTCTTTCAATAACTC 176867
| |||||||| |||| | ||| || |||||
Sbjct 555 TTGATCTTCCAATATGATAGTTTTAACAACTC 524
>seq20218
Length=9351
Score = 109 bits (120), Expect = 7e-19
Identities = 78/90 (87%), Gaps = 0/90 (0%)
Strand=Plus/Plus
Query 177010 ACATGGGGAGATATCCTTAACCGTGCAAACCTTGGTATGGAAGTTATGCACGAGCGTAAT 177069
|| |||| |||||| | |||||||| ||||||||||||||||||||||| || ||||||
Sbjct 2122 ACTTGGGTTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 2181
Query 177070 GCTCACAACTTCCCACTTGACCTTGCTGCT 177099
||||| |||||||| || ||||| ||||||
Sbjct 2182 GCTCATAACTTCCCTCTAGACCTAGCTGCT 2211
>seq46
Length=65133
Score = 105 bits (116), Expect = 8e-18
Identities = 142/195 (73%), Gaps = 6/195 (3%)
Strand=Plus/Plus
Query 176878 CACTTCTTCCTTGCAGCATTCCCAGTTGTTTGCATCTGGTTTACTGCAATGGGTGTTTGC 176937
|||||||||| || || | || || || | ||||||||||| || | ||| | ||
Sbjct 51964 CACTTCTTCCGAGCTGCTTGGCCCGTAGTAGGTATCTGGTTTACCGCTTTAGGTATCAGC 52023
Query 176938 ACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCTTAGACAACTCTG-G 176996
| |||| |||| ||| || |||||||| |||||||| ||||| | || | || | |
Sbjct 52024 GCTATGGGTTTCACCCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGA-TAGTCAGTG 52082
Query 176997 TAAAGTGATTCCTACATGGGGAGA----TATCCTTAACCGTGCAAACCTTGGTATGGAAG 177052
| | || ||| || |||| || |||| | |||||||| ||||||||||||||||
Sbjct 52083 TCATGTAATTAACACTTGGGCCGATATGTATCATCAACCGTGCTAACCTTGGTATGGAAG 52142
Query 177053 TTATGCACGAGCGTA 177067
||||||| || ||||
Sbjct 52143 TTATGCATGAACGTA 52157
>seq3149
Length=150756
Score = 89.7 bits (98), Expect = 6e-13
Identities = 79/99 (80%), Gaps = 0/99 (0%)
Strand=Plus/Plus
Query 176530 GCAGTTTTCCTCGTCTATCCATTCGGTCAAGGATCTTTCTCTGATGGTATGCCTCTTGGC 176589
||||| ||| | |||| ||| ||||| ||||| ||| ||||||||||||||||| ||
Sbjct 11598 GCAGTATTCTTGATCTACCCAATCGGTTAAGGAAGTTTTTCTGATGGTATGCCTCTAGGA 11657
Query 176590 ATTTCAGGTACATTCAACTTTATGTTTGTATTCCAAGCA 176628
|| || ||||| ||||| | ||| ||||||||||| ||
Sbjct 11658 ATCTCTGGTACTTTCAATTACATGATTGTATTCCAACCA 11696
>seq15728
Length=57915
Score = 87.8 bits (96), Expect = 2e-12
Identities = 166/242 (69%), Gaps = 3/242 (1%)
Strand=Plus/Plus
Query 176741 AGACAACCGAAAA--CGAATCACAAAACTACGGTTACAAATTCGGACAAGAAGAAGAGAC 176798
|| |||| ||||| ||||||| || | |||||| |||| | ||||| ||| | ||
Sbjct 13100 AGCCAACAGAAAAGTCGAATCATCGAATGAATGTTACATATTCTGTCAAGAGGAAAAAAC 13159
Query 176799 ATACAACATTGTAGCTGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTT 176858
|| || ||||||| | || ||||| ||||| | | |||| || |||| | |||
Sbjct 13160 TTATAATATTGTAGTCGTTCATGGTTATTTTGGCTGATTGATCTACCGATATGTTAGTTT 13219
Query 176859 CAATAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCAGTTGTTTGCATCTGGTT 176918
|||| |||| | | |||||||||||||| || | | | || | ||||||||
Sbjct 13220 CAATGACTCTCGTTCGTTACACTTCTTCCTTGCTGCTTGGCATATAGTAGGTATCTGGTT 13279
Query 176919 TACTGC-AATGGGTGTTTGCACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGT 176977
||| | | ||| || |||||||| ||||| || || |||||| |||| ||| |
Sbjct 13280 TACCACTTTTAGGTATTAGCACAATGCTTTTCAATCTAAAAAATTTCAATTTCAGCCAAT 13339
Query 176978 CT 176979
||
Sbjct 13340 CT 13341
>seq17608
Length=53485
Score = 84.2 bits (92), Expect = 3e-11
Identities = 72/89 (81%), Gaps = 0/89 (0%)
Strand=Plus/Minus
Query 19485 GACTTTGGAGCATGTATTTTCTGCGGTAACTGCGTAGAGTATTGCCCAACAAACTGTCTA 19544
|| |||||| ||||| || || ||||| ||||| ||||||||||||||||| ||| ||
Sbjct 17726 GATTTTGGAATCTGTATATTTTGTGGTAATTGCGTTGAGTATTGCCCAACAAATTGTTTA 17667
Query 19545 TCCATGACAGAAGAATATGAATTGGCTAC 19573
|| ||||| ||||||| |||| | ||||
Sbjct 17666 TCAATGACCGAAGAATCTGAACTTTCTAC 17638
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 603170097196800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |