Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21] 42,990 sequences; 724,284,658 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq796 93.3 3e-14 seq545 93.3 3e-14 seq3886 87.8 1e-12 >seq796 Length=44438 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| |||||||| || | ||||| || || || |||| || ||||| | Sbjct 19517 ATGCAAATCTTTGTGAAGACCTTGACTGGCAAGACAATCACCCTTGAGGTGGAAAGTTCT 19576 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || ||||| || || ||||| |||||||||||| |||| || | Sbjct 19577 GACACCATTGACAAT--GTTAAGGCCAAAATTCAGGACAAAGAAGGTATTCCACCAGACC 19634 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| |||| || ||||||||||| || ||||| || | | | | || ||||||||| Sbjct 19635 AGCAGAGGTTGATCTTTGCCGGAAAGCAGTTGGAAGATGGAAGGACATTAGCCGATTACA 19694 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| || ||| || | || ||||| ||||| | || || || Sbjct 19695 ACATCCAGAAGGAGTCAACCCTTCACTTGGTCCTGCGTCTCCGAGGTGG 19743 >seq545 Length=31085 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/196 (72%), Gaps = 6/196 (3%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||| ||||| |||||||| || ||||| ||| || |||| ||||| ||| | Sbjct 2184 AATGCAAATCTTTGTTAAAACTCTGACCGGGAAGACTATAACTCTTGAGGTCGAGAGCTC 2243 Query 27849 CGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 ||| || | ||| |||||| ||||| ||||| |||||| |||| || Sbjct 2244 AGACACCATCGATAAT--GTCAAAGCTAAAATTCAAGACAAGGAAGGTATTCCCCCAGAC 2301 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAG-CTTGTCCGATTA 27965 ||||| || | || ||||| || ||||| | || || | || | |||| | ||||| Sbjct 2302 CAGCAGAGGCTGATCTTTGCTGGGAAACAGCTTGAAGATGGCCGAACACTTG-CTGATTA 2360 Query 27966 CAACATCCAAAAAGAG 27981 |||||||||||||||| Sbjct 2361 CAACATCCAAAAAGAG 2376 Score = 89.7 bits (98), Expect = 4e-13 Identities = 140/196 (71%), Gaps = 6/196 (3%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||| ||||| |||||||| || ||||| ||| || |||| ||||| ||| | Sbjct 2412 AATGCAAATCTTTGTTAAAACTCTGACCGGGAAGACTATAACTCTTGAGGTCGAGAGCTC 2471 Query 27849 CGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 ||| || | ||| |||||| ||||| ||||| |||||| |||| || Sbjct 2472 AGACACCATCGATAAT--GTCAAAGCTAAAATTCAAGACAAGGAAGGTATTCCCCCAGAC 2529 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAG-CTTGTCCGATTA 27965 ||||| || | || ||||| || ||||| | || || | || | |||| | ||||| Sbjct 2530 CAGCAGAGGCTGATCTTTGCTGGGAAACAGCTTGAAGATGGCCGAACACTTG-CTGATTA 2588 Query 27966 CAACATCCAAAAAGAG 27981 |||||||||||| ||| Sbjct 2589 CAACATCCAAAAGGAG 2604 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||||||||| || ||| | |||||||| |||||| | || || || || | Sbjct 3097 ATGCAAATTTTTGTCAAGACTTTGACTGGGAAGACAATTACATTGGAGGTTGAGAGTTCA 3156 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || ||||| || ||| ||| || ||||| || ||| |||| || | Sbjct 3157 GATACCATTGACAAT--GTGAAAGCAAAGATTCAAGACAAGGAGGGTATTCCCCCAGACC 3214 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAG-CTTGTCCGATTAC 27966 | || || || || ||||| || |||||| | || || | | | |||| | || ||| Sbjct 3215 AACAGCGTTTGATCTTTGCTGGTAAACAACTTGAGGAYGGGAGGACTCTTG-CAGACTAC 3273 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||| || ||| ||| | ||| |||| ||||||||| | || || Sbjct 3274 AACATCCAGAAGGAGTCAACTCTCCATCTGGTGTTGCGTTTGAGAGGAGG 3323 >seq3886 Length=20373 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || || ||||| |||||||| || || ||||| |||| ||||||||| | Sbjct 13909 ATGCAGATCTTCGTGAAGACTCTTACGGGTAAGACGATTACCCTTGAGGTCGAAAGCTCA 13850 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || |||| ||||| || || || || ||||| |||| || | Sbjct 13849 GACACCATTGACAAC--GTCAAGGCTAAGATCCAGGATAAGGAAGGCATTCCCCCAGACC 13792 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| |||| || ||||| ||||| || ||||| || | |||| | | | || |||| Sbjct 13791 AGCAGAGGTTGATCTTTGCAGGAAAGCAGTTGGAAGATGGCCGCACCCTAGCTGACTACA 13732 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| || ||| ||| | |||||||| | ||| | ||||| || Sbjct 13731 ACATCCAGAAGGAGTCCACCCTCCATTTGGTGCTCCGTCTCCGTGGTGG 13683 Score = 82.4 bits (90), Expect = 5e-11 Identities = 146/211 (69%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||| || || ||||| |||||| || || | || || || ||| || Sbjct 13225 ATGCAAATCTTTGTTAAGACCCTTACCGGGAAAACCATCACCCTGGAGGTTGAGAGCTCC 13166 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || ||||| ||||| || || ||||| || ||| |||| || | Sbjct 13165 GACACCATTGACAAT--GTCAAGGCCAAGATCCAAGACAAGGAGGGTATTCCCCCAGACC 13108 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| |||| |||||||| || || || | || || | |||| ||| | || |||| Sbjct 13107 AGCAGAGGTTGATTTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACTTTGGCGGACTACA 13048 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGT 27998 |||||||||| ||| || |||| ||||| Sbjct 13047 ACATCCAAAAGGAGTCGACCCTGCACTTGGT 13017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355675949231730