Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21] 42,990 sequences; 724,284,658 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq30006 136 3e-27 seq796 111 1e-19 seq545 107 1e-18 seq558 95.1 8e-15 seq544 91.5 1e-13 seq3956 89.7 3e-13 seq3886 89.7 3e-13 >seq30006 Length=21699 Score = 136 bits (150), Expect = 3e-27 Identities = 148/194 (76%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||| ||||| ||||| || ||||| || |||||||| || |||||||| || Sbjct 12701 AAAATGCAGATCTTCGTGAAAACTCTTACGGGGAAGACGATCACGCTTGAAGTTGAATCA 12760 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | |||||| |||| ||| | ||| | || ||| ||||| |||||| | || || || Sbjct 12761 AGCGACACTATTGACAATGTCAAAGC-TAAGATTCAAGACAAGGAAGGTATTCCACCGGA 12819 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 || ||||| || || || ||||| || || || ||||| | ||| ||| ||| ||||| Sbjct 12820 CCAGCAGCGATTGATCTTCGCCGGAAAGCAGCTCGAAGATGGACGTACTCTAGCTGATTA 12879 Query 23787 CAACATACAAAAAG 23800 |||||| || |||| Sbjct 12880 CAACATTCAGAAAG 12893 >seq796 Length=44438 Score = 111 bits (122), Expect = 1e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || ||||||||||| ||||| || ||||| || || || || | | Sbjct 18605 ATGCAGATATTTGTCAAAACCCTCACTGGAAAGACCATCACCCTTGAGGTGGAAAGCTCA 18664 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| || ||||| | || || ||||| ||||| | || ||||| || Sbjct 18665 GACACCATTGACAACGTTAAAGC-CAAGATCCAGGACAAGGAAGGCATTCCCCCAGACCA 18723 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||| ||||| || || ||||| | || || | | ||||||||| Sbjct 18724 GCAGAGGCTGATCTTTGCGGGCAAGCAGCTTGAAGATGGCCGTACCCTCGCCGATTACAA 18783 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| |||||||||||||| Sbjct 18784 CATTCAAAAAGAGTCCAC 18801 Score = 102 bits (112), Expect = 6e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || || ||| | || || || || ||||| || || || || | Sbjct 19517 ATGCAAATCTTTGTGAAGACCTTGACTGGCAAGACAATCACCCTTGAGGTGGAAAGTTCT 19576 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| |||| | |||| || |||||||||||| | || ||||| || Sbjct 19577 GACACCATTGACAATGTTAAGGCCAAAA-TTCAGGACAAAGAAGGTATTCCACCAGACCA 19635 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || |||||||| || || ||||||| | | | || |||| ||||||||| Sbjct 19636 GCAGAGGTTGATCTTTGCCGGAAAGCAGTTGGAAGATGGAAGGACATTAGCCGATTACAA 19695 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 19696 CATCCAGAAGGAGTCAAC 19713 Score = 87.8 bits (96), Expect = 1e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| ||||| || || || | || ||||| || ||||| || || ||||| | | Sbjct 19060 AATGCAAATTTTTGTGAAGACTTTGACCGGAAAGACCATCACCCTTGAGGTTGAAAGCTC 19119 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 |||||| |||| ||| ||||| | || | | ||||| ||||| | || ||||| | Sbjct 19120 CGACACTATTGACAATGTTAAAGCCAAGA-TCCAGGACAAGGAAGGCATTCCCCCAGACC 19178 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | ||| | || || |||||||| || || || || |||| | || | | ||||||| Sbjct 19179 AGCAGAGATTGATCTTTGCCGGAAAGCAGCTTGAGGACGGCAGGACCCTTGCTGATTACA 19238 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||| || || || || || Sbjct 19239 ACATCCARAAGGAATCAAC 19257 Score = 82.4 bits (90), Expect = 5e-11 Identities = 139/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| |||||||| ||||| | || ||||| || ||||| || || ||||| | | Sbjct 18832 AATGCAAATTTTCGTGAAAACTTTGACAGGAAAGACCATCACCCTTGAGGTTGAAAGCTC 18891 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| |||| ||| |||| | || | | ||||| ||||| | || ||||| | Sbjct 18892 TGACACCATTGACAATGTTAAGGCTAAGA-TCCAGGACAAGGAAGGCATTCCCCCAGACC 18950 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | ||| | || || ||||| || || || || || |||| | || | | ||||||| Sbjct 18951 AGCAGAGATTGATCTTTGCGGGAAAGCAGCTTGAGGACGGCAGGACCCTTGCTGATTACA 19010 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||| || || || || || Sbjct 19011 ACATCCAGAAGGAATCAAC 19029 >seq545 Length=31085 Score = 107 bits (118), Expect = 1e-18 Identities = 149/206 (72%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 23603 TACTTAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTG 23662 || || | |||||||| || ||||| || ||||| ||||| || |||||||| || || | Sbjct 1949 TATTTCAGATGCAGATATTTGTTAAGACACTCACCGGAAAGACCATCACTCTTGAGGTCG 2008 Query 23663 ACTCCACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCG 23721 | | ||||| |||| ||| | ||| | || | || ||||| ||||| | || Sbjct 2009 AGAGTTCTGACACCATTGATAATGTCAAAGCTAAGA-TTCAAGACAAGGAAGGCATTCCT 2067 Query 23722 CCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGC 23781 |||||||| ||| | | || ||||| || ||||| || ||||| | || || | | Sbjct 2068 CCAGATCAGCAGAGACTGATCTTTGCTGGGAAACAGCTTGAAGATGGCCGAACACTTGCT 2127 Query 23782 GATTACAACATACAAAAAGAGTCCAC 23807 ||||||||||| ||||||||||| || Sbjct 2128 GATTACAACATCCAAAAAGAGTCTAC 2153 Score = 100 bits (110), Expect = 2e-16 Identities = 143/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || || |||||||| || || || || || || ||||| || || || | | Sbjct 2184 AATGCAAATCTTTGTTAAAACTCTGACCGGGAAGACTATAACTCTTGAGGTCGAGAGCTC 2243 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| | || ||| | ||| | |||| || ||||| |||||| | || ||||| | Sbjct 2244 AGACACCATCGATAATGTCAAAGCTAAAA-TTCAAGACAAGGAAGGTATTCCCCCAGACC 2302 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | ||| | | || ||||| || ||||| || ||||| | || || | | ||||||| Sbjct 2303 AGCAGAGGCTGATCTTTGCTGGGAAACAGCTTGAAGATGGCCGAACACTTGCTGATTACA 2362 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||| ||||||||||| || Sbjct 2363 ACATCCAAAAAGAGTCTAC 2381 Score = 100 bits (110), Expect = 2e-16 Identities = 143/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || || |||||||| || || || || || || ||||| || || || | | Sbjct 2412 AATGCAAATCTTTGTTAAAACTCTGACCGGGAAGACTATAACTCTTGAGGTCGAGAGCTC 2471 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| | || ||| | ||| | |||| || ||||| |||||| | || ||||| | Sbjct 2472 AGACACCATCGATAATGTCAAAGCTAAAA-TTCAAGACAAGGAAGGTATTCCCCCAGACC 2530 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | ||| | | || ||||| || ||||| || ||||| | || || | | ||||||| Sbjct 2531 AGCAGAGGCTGATCTTTGCTGGGAAACAGCTTGAAGATGGCCGAACACTTGCTGATTACA 2590 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||| ||||| |||||||| Sbjct 2591 ACATCCAAAAGGAGTCCAC 2609 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || || | || || || || ||||| | || ||||| | Sbjct 3325 ATGCAGATCTTTGTGAAGACTTTGACTGGGAAGACAATCACATTGGAGGTTGAGAGTTCA 3384 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| | ||| |||| | || ||||| || ||| | || ||||| || Sbjct 3385 GATACCATTGACAATGTGAAAGCAAAGA-TTCAAGACAAGGAGGGTATTCCCCCAGACCA 3443 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||||||| || ||||| || ||||| || || || | | ||| | | || ||||| Sbjct 3444 ACAGCGTTTGATCTTTGCTGGTAAACAWCTTGAGGAYGGGAGGACTCTTGCAGACTACAA 3503 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| || || ||||| || | ||| | || || | ||| ||||||| Sbjct 3504 CATCCAGAAGGAGTCAACTCTCCATCTGGTGTTGCGTTTGAGAGGAGG 3551 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || || || || ||||| || ||||| || |||||||| | Sbjct 2641 ATGCAGATCTTTGTCAAGACACTTACTGGAAAGACCATCACCCTTGAAGTTGAAAGTTCC 2700 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||| | | || |||||| ||||| ||||| | || ||||| || Sbjct 2701 GATACCATTGACAACGTGAAGGCCAAAATTCAGGACAAGGAAGGGATTCCTCCAGACCAG 2760 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || ||||||||||| ||||| || || | | | || | | || ||||| Sbjct 2761 CAGAGACTGATCTTTGCCGGCAAGCAACTTGAGGATGGAAGGACCCTGGCTGACTACAAT 2820 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTT 23820 || || |||||||| || |||||| | ||| Sbjct 2821 ATTCAGAAAGAGTCTACCTTACATCTTGTT 2850 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||| || || || | || || || || || || | || ||||| | Sbjct 3097 ATGCAAATTTTTGTCAAGACTTTGACTGGGAAGACAATTACATTGGAGGTTGAGAGTTCA 3156 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| | ||| |||| | || ||||| || ||| | || ||||| || Sbjct 3157 GATACCATTGACAATGTGAAAGCAAAGA-TTCAAGACAAGGAGGGTATTCCCCCAGACCA 3215 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||||||| || ||||| || |||||||| || || | | ||| | | || ||||| Sbjct 3216 ACAGCGTTTGATCTTTGCTGGTAAACAACTTGAGGAYGGGAGGACTCTTGCAGACTACAA 3275 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| || || ||||| || | ||| | || || | ||| ||||||| Sbjct 3276 CATCCAGAAGGAGTCAACTCTCCATCTGGTGTTGCGTTTGAGAGGAGG 3323 >seq558 Length=67963 Score = 95.1 bits (104), Expect = 8e-15 Identities = 143/201 (71%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||| || || || ||||| ||||| || || || || | || || || || Sbjct 17321 AAAATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACTATTACCTTAGAGGTAGAGTCA 17262 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| |||| ||| |||| | || ||| ||||| ||||| | || ||||| Sbjct 17261 TCAGACACCATTGACAATGTTAAGGC-TAAGATTCAAGACAAGGAAGGCATTCCACCAGA 17203 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 || ||||| || || || ||||| || || || || || | || || ||| || || Sbjct 17202 CCAGCAGCGATTGATTTTCGCCGGTAAGCAGCTCGAGGATGGCCGAACGCTAGCTGACTA 17143 Query 23787 CAACATACAAAAAGAGTCCAC 23807 |||||| || || |||||||| Sbjct 17142 CAACATCCAGAAGGAGTCCAC 17122 Score = 86.0 bits (94), Expect = 4e-12 Identities = 141/201 (70%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||| || || || ||||| ||||| || || || || | || || || || Sbjct 63631 AAAATGCAGATCTTTGTGAAGACCCTAACGGGCAAGACTATTACCTTAGAGGTAGAGTCA 63690 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| |||| ||| |||| | || ||| ||||| ||||| | || ||||| Sbjct 63691 TCAGACACCATTGACAATGTTAAGGC-TAAGATTCAGGACAAGGAAGGCATCCCACCAGA 63749 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 || ||| | || || ||||| || || || || || || | || || ||| || || Sbjct 63750 CCAGCAGAGGTTGATTTTTGCAGGAAAGCAGCTTGAGGATGGCCGAACGCTAGCTGACTA 63809 Query 23787 CAACATACAAAAAGAGTCCAC 23807 |||||| || || || ||||| Sbjct 63810 CAACATCCAGAAGGAATCCAC 63830 >seq544 Length=28317 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTT--AAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCA 23668 |||||||| || ||| || || |||| ||||| || |||||||| || || || | Sbjct 22446 ATGCAGATATTTGTTTTAAGACGCTCATCGGAAAGACCATCACTCTTGAGGTCGAGAGCT 22387 Query 23669 CGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 | |||||| |||| | ||||| || ||| ||||| ||||| | || ||||||| Sbjct 22386 CTGACACTATTGATAATGTAAAAGCTAAGATTCAAGACAAGGAAGGCATTCCTCCAGATC 22327 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | | | | || || ||||| || ||||| || ||||| | | || | | ||||||| Sbjct 22326 AGCGGAGGTTGATCTTTGCTGGGAAACAGCTTGAAGATGGCCAAACAATTGCTGATTACA 22267 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||| ||| | ||||| || Sbjct 22266 ACATCCAAGACGAGTCTAC 22248 >seq3956 Length=148667 Score = 89.7 bits (98), Expect = 3e-13 Identities = 151/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || |||||||| |||| ||||| || || ||||| || || | || Sbjct 117982 ATGCAAATCTTTGTTAAAACTCTCATTGGAAAGACCATTACTCTGGATGTGAAGAGTACC 117923 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || | |||| ||| ||||| |||| | ||| ||||||||||| | || ||||||| Sbjct 117922 AACTCCATTGACAATGTTAAAGCAAAGA-TTGAAGACAAAGAAGGAATTCCCTCAGATCA 117864 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | ||| ||| || || |||||| | | || || | || | | |||||||| Sbjct 117863 ACAAAGATTAGTATATGGTGGAAAACAATTTAAGGATGATCATACACTTGCTGATTACAA 117804 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 || ||||| ||||| ||| | ||| | || || || Sbjct 117803 TATTCAAAAGGAGTCTACAATTCATCTTGTCTTGAG 117768 >seq3886 Length=20373 Score = 89.7 bits (98), Expect = 3e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || |||||||| ||||| || |||||| | || || || | | Sbjct 13453 ATGCAGATTTTTGTGAAGACCCTCACCGGAAAGACCATCACTTTGGAGGTGGAAAGCTCC 13394 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| |||| | || || ||||| || || | || ||||| || Sbjct 13393 GACACCATTGATAATGTTAAGGC-TAAGATCCAGGACAAGGAGGGAATTCCCCCAGACCA 13335 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || || || || || || || || |||| ||||| | | ||| ||||| Sbjct 13334 GCAGAGGTTGATCTTCGCTGGTAAGCAGCTCGAGGACGGCCGCACCCTTGCCGACTACAA 13275 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 13274 CATCCAGAAGGAGTCGAC 13257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337832503038920