Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21] 42,990 sequences; 724,284,658 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq728 147 2e-30 >seq728 Length=46982 Score = 147 bits (162), Expect = 2e-30 Identities = 550/855 (64%), Gaps = 17/855 (2%) Strand=Plus/Plus Query 4272 ACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAAC 4331 |||| ||| || ||||||||||| || |||| ||| ||| ||||| ||||||| Sbjct 1973 ACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGTAAACTAATCAGCTCCATCCAATCAAAT 2032 Query 4332 GGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGCAATCGGTCAGCTACA 4391 ||||| || ||||| || ||| | | ||| | | ||||| |||||||||| Sbjct 2033 GGATTCTGAGCATTGTACATCTTGTCATAACCCAAAGCATCCAACAATCTGTCAGCTACA 2092 Query 4392 AATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTA-ATCTCACAGGTAGCGC 4450 || ||||| || | ||||| | || | || ||||| | | | | || ||| || || Sbjct 2093 AACTCTATGTATTTACTCATCAAATCTCCATTCATTCCCACCAGAGCACA-AGGAAGAGC 2151 Query 4451 GTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTTATTTTATC 4510 | || ||||| |||||| || || |||| | || | | | | || Sbjct 2152 ATCACACACGAACTCCCTTTCTATCTCCACAGCATCTGCAACAATTCCCCTGACTCGCTC 2211 Query 4511 TTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAATCACAATGCAAACC 4570 | || | | || | || | | | | ||||||||||||||||| |||||||| Sbjct 2212 CTCAGTTAGCTTCGTCCTTAGCAAACTGTAAAGCAAACACGCAAAATCACAGTGCAAACC 2271 Query 4571 TTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTT 4630 ||||||||| ||| | || || || || |||||||| |||||||| || | ||||| Sbjct 2272 TTCGTCTCTTGAAATTAACTCATTTGAGAAGGTTAATCCAGGCATTAACCCCCGTTTTTT 2331 Query 4631 AAGCCAAAATAT--AGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAAC 4688 | ||||||||| | | | | | | | | ||||| || ||||| || |||||| Sbjct 2332 CAACCAAAATATCGAACAGAAGCTTCCGCTG--AAGAAAATCCCTTCAACACAGGCAAAA 2389 Query 4689 GCTACTAATCGGGACCCGAACGAGCTGGCTTTG---TCTTTAATCCATTTTAATGCCCAG 4745 || || || || | |||| || || | | | ||||| | ||||| Sbjct 2390 GCCACCAAACGCTCCGCGAA------GGTTTCGGACCCATCGATCCAACGAAGGGCCCAT 2443 Query 4746 TTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAATTTACTTTTTTCA 4805 || || || || | ||| || || ||||| | || || || ||||| || ||||| Sbjct 2444 TTCGCCTTCTTTTCAACACAAGGGATTGTCTCAATCGCACGGAACAATTTGCTCTTTTCG 2503 Query 4806 AATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCT 4865 | || | || || | || | || | || ||||| || ||||| ||||| || Sbjct 2504 TCAGAATCCTTGATGTACGACTCCAACAGCAAACTGTACATCTCGGAATGGATATTCTCA 2563 Query 4866 ATAGCAATCTGAAATCCGTA-AAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAA 4924 || || || || || || || |||||| | | | || | || || || || || || Sbjct 2564 ATGGCGATTTGGAACCCATAGAAAGCA-CGAACCTCGGCAACCTGGACGTCTTTCATGAA 2622 Query 4925 TCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATG 4984 ||| | | | ||| || || || ||||| ||| |||||||| || | |||||| Sbjct 2623 CCTTCCAGCGAGGTTCTCTAAAACGATGCCGTCTGAGGCAGCAAAAAAGGCAAGAACATG 2682 Query 4985 AGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAA 5044 || || || | | ||| | | | || |||| |||||| | ||| | | | Sbjct 2683 AGTGATGAAATGCCTTTCACCGGATGTTAGGTTTTCCCAGTGACGAGTATCGGTGGAGAG 2742 Query 5045 ATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAATATC 5104 ||| |||||||| || ||||| || || || ||||| |||||||| |||||| | Sbjct 2743 ATCGACTTCTTCTACCGTCCAGAAAGATGCCATGGCTTTCTTGTACATTTCCCAAATCTG 2802 Query 5105 AGGATACTGAATCGG 5119 ||||||||||| || Sbjct 2803 TGGATACTGAATTGG 2817 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426825851365670