Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21]
42,990 sequences; 724,284,658 total letters
Query= NC_030656.1
Length=133492
Score E
Sequences producing significant alignments: (Bits) Value
seq728 147 2e-30
>seq728
Length=46982
Score = 147 bits (162), Expect = 2e-30
Identities = 550/855 (64%), Gaps = 17/855 (2%)
Strand=Plus/Plus
Query 4272 ACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAAC 4331
|||| ||| || ||||||||||| || |||| ||| ||| ||||| |||||||
Sbjct 1973 ACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGTAAACTAATCAGCTCCATCCAATCAAAT 2032
Query 4332 GGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGCAATCGGTCAGCTACA 4391
||||| || ||||| || ||| | | ||| | | ||||| ||||||||||
Sbjct 2033 GGATTCTGAGCATTGTACATCTTGTCATAACCCAAAGCATCCAACAATCTGTCAGCTACA 2092
Query 4392 AATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTA-ATCTCACAGGTAGCGC 4450
|| ||||| || | ||||| | || | || ||||| | | | | || ||| || ||
Sbjct 2093 AACTCTATGTATTTACTCATCAAATCTCCATTCATTCCCACCAGAGCACA-AGGAAGAGC 2151
Query 4451 GTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTTATTTTATC 4510
| || ||||| |||||| || || |||| | || | | | | ||
Sbjct 2152 ATCACACACGAACTCCCTTTCTATCTCCACAGCATCTGCAACAATTCCCCTGACTCGCTC 2211
Query 4511 TTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAATCACAATGCAAACC 4570
| || | | || | || | | | | ||||||||||||||||| ||||||||
Sbjct 2212 CTCAGTTAGCTTCGTCCTTAGCAAACTGTAAAGCAAACACGCAAAATCACAGTGCAAACC 2271
Query 4571 TTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTT 4630
||||||||| ||| | || || || || |||||||| |||||||| || | |||||
Sbjct 2272 TTCGTCTCTTGAAATTAACTCATTTGAGAAGGTTAATCCAGGCATTAACCCCCGTTTTTT 2331
Query 4631 AAGCCAAAATAT--AGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAAC 4688
| ||||||||| | | | | | | | | ||||| || ||||| || ||||||
Sbjct 2332 CAACCAAAATATCGAACAGAAGCTTCCGCTG--AAGAAAATCCCTTCAACACAGGCAAAA 2389
Query 4689 GCTACTAATCGGGACCCGAACGAGCTGGCTTTG---TCTTTAATCCATTTTAATGCCCAG 4745
|| || || || | |||| || || | | | ||||| | |||||
Sbjct 2390 GCCACCAAACGCTCCGCGAA------GGTTTCGGACCCATCGATCCAACGAAGGGCCCAT 2443
Query 4746 TTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAATTTACTTTTTTCA 4805
|| || || || | ||| || || ||||| | || || || ||||| || |||||
Sbjct 2444 TTCGCCTTCTTTTCAACACAAGGGATTGTCTCAATCGCACGGAACAATTTGCTCTTTTCG 2503
Query 4806 AATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCT 4865
| || | || || | || | || | || ||||| || ||||| ||||| ||
Sbjct 2504 TCAGAATCCTTGATGTACGACTCCAACAGCAAACTGTACATCTCGGAATGGATATTCTCA 2563
Query 4866 ATAGCAATCTGAAATCCGTA-AAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAA 4924
|| || || || || || || |||||| | | | || | || || || || || ||
Sbjct 2564 ATGGCGATTTGGAACCCATAGAAAGCA-CGAACCTCGGCAACCTGGACGTCTTTCATGAA 2622
Query 4925 TCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATG 4984
||| | | | ||| || || || ||||| ||| |||||||| || | ||||||
Sbjct 2623 CCTTCCAGCGAGGTTCTCTAAAACGATGCCGTCTGAGGCAGCAAAAAAGGCAAGAACATG 2682
Query 4985 AGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAA 5044
|| || || | | ||| | | | || |||| |||||| | ||| | | |
Sbjct 2683 AGTGATGAAATGCCTTTCACCGGATGTTAGGTTTTCCCAGTGACGAGTATCGGTGGAGAG 2742
Query 5045 ATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAATATC 5104
||| |||||||| || ||||| || || || ||||| |||||||| |||||| |
Sbjct 2743 ATCGACTTCTTCTACCGTCCAGAAAGATGCCATGGCTTTCTTGTACATTTCCCAAATCTG 2802
Query 5105 AGGATACTGAATCGG 5119
||||||||||| ||
Sbjct 2803 TGGATACTGAATTGG 2817
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 426825851365670
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |