Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21] 42,990 sequences; 724,284,658 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq728 129 8e-25 seq23166 123 4e-23 seq30480 114 2e-20 >seq728 Length=46982 Score = 129 bits (142), Expect = 8e-25 Identities = 386/596 (65%), Gaps = 0/596 (0%) Strand=Plus/Plus Query 46627 AAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTG 46686 ||||| ||||||||||| || | ||||| ||||| |||||| || || || || || Sbjct 2246 AAACACGCAAAATCACAGTGCAAACCTTCGTCTCTTGAAATTAACTCATTTGAGAAGGTT 2305 Query 46687 AGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAG 46746 | |||||||||| || || ||||| | ||||||||| | ||| ||| ||| Sbjct 2306 AATCCAGGCATTAACCCCCGTTTTTTCAACCAAAATATCGAACAGAAGCTTCCGCTGAAG 2365 Query 46747 AATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTATGA 46806 || || ||||| ||| || || || || | | ||| || | | | || Sbjct 2366 AAAATCCCTTCAACACAGGCAAAAGCCACCAAACGCTCCGCGAAGGTTTCGGACCCATCG 2425 Query 46807 ATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTA 46866 ||||| | | ||||| | ||||| || | |||||||| ||||| || || ||| Sbjct 2426 ATCCAACGAAGGGCCCATTTCGCCTTCTTTTCAACACAAGGGATTGTCTCAATCGCACGG 2485 Query 46867 AAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATT 46926 || | | | ||||| ||| ||| || | || | || | | | ||| ||||| Sbjct 2486 AACAATTTGCTCTTTTCGTCAGAATCCTTGATGTACGACTCCAACAGCAAACTGTACATC 2545 Query 46927 TCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATC 46986 || ||||| || || ||||| || || || || || || ||| | | || | || | Sbjct 2546 TCGGAATGGATATTCTCAATGGCGATTTGGAACCCATAGAAAGCACGAACCTCGGCAACC 2605 Query 46987 TGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCA 47046 || || ||| | || | | ||| | ||||| || || || || |||||| Sbjct 2606 TGGACGTCTTTCATGAACCTTCCAGCGAGGTTCTCTAAAACGATGCCGTCTGAGGCAGCA 2665 Query 47047 AAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCA 47106 ||||| || | ||||| | || |||| ||||| ||| || || || | ||||| | Sbjct 2666 AAAAAGGCAAGAACATGAGTGATGAAATGCCTTTCACCGGATGTTAGGTTTTCCCAGTGA 2725 Query 47107 TTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTA 47166 |||| | || | ||| |||||||| | |||||||| || ||| ||||| || Sbjct 2726 CGAGTATCGGTGGAGAGATCGACTTCTTCTACCGTCCAGAAAGATGCCATGGCTTTCTTG 2785 Query 47167 TACATATTCCATATATCACGATATTGGATCGGAAAAATAACAAATCTATTTGGATT 47222 ||||| | ||| || | |||| || || || || ||| |||| || ||| || Sbjct 2786 TACATTTCCCAAATCTGTGGATACTGAATTGGGAACATACAGAATCGATCTGGGTT 2841 >seq23166 Length=18651 Score = 123 bits (136), Expect = 4e-23 Identities = 161/223 (72%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 76753 ACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCC 76812 |||||| || || | ||||| ||||||| |||| | || | | ||| |||||||| || Sbjct 8358 ACCTCCTTGGTCAACATATCGAGCAGTGTCATTAAACACACGTAGCATCGGAATAATTCC 8417 Query 76813 GTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGA 76872 || ||||| |||||||||||| ||||||||| ||| |||||||||| | ||| Sbjct 8418 ATTTGATGTCCCATTTGTTCCACGAATATAACTCCCAGTGCCACGAATATTGTGCACAGA 8477 Query 76873 TAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGAT 76932 || || |||||||| || ||| || | |||||| || | |||||||| || Sbjct 8478 TACTCCAATTCCTCCAGCAGATTTGCTAATAACAGCACACTCCTTAAGAGTGTCATATAT 8537 Query 76933 GCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975 |||||| |||||||| || ||||| | || || |||||| Sbjct 8538 GCCCTCAATACTATCGTCTTTCATGCATATCAGGAAGCAGCTA 8580 Score = 91.5 bits (100), Expect = 2e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 76993 AGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATT 77052 |||||| |||||||| | || ||||| ||||||||||||||| | | ||| | | || Sbjct 8680 AGTTCCAGCATTAAAAAGAGTTGGAGAAGCATGAGTGAACCATCTCTGAGACATCAAATG 8739 Query 77053 GTATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAA 77112 || || | || | | ||| ||||| | ||| || ||||||| ||| | ||||| Sbjct 8740 ATAAGTCTTGATGGCAGATTCAATATCATTCTTATGTATCCCTACAGAGACTCTCATCAG 8799 Query 77113 CATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAA 77172 ||| || || || | ||||||| || || || || || | ||| ||| |||| Sbjct 8800 CATGTGTTGTGGCCTTTCTACAACTTTCCCATCAATCTTTAAGAGGTAAGATCGCTCCAG 8859 Query 77173 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220 ||||| |||||||| || | || |||||| || || || || || Sbjct 8860 GGTTTTGAAACCAAAGTAATCATAGTCAAAGTCCCTGTCATATATGAT 8907 >seq30480 Length=20585 Score = 114 bits (126), Expect = 2e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 76993 AGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATT 77052 ||| || |||||||| | ||| |||||||||||||||||||| || ||| | | || Sbjct 14637 AGTGCCAGCATTAAATAGTGTTGGAGATGCATGAGTGAACCAGCGTTGAGACATCAAATG 14578 Query 77053 GTATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAA 77112 ||||| | || || | ||| |||||| || || ||||| |||| || | ||||| Sbjct 14577 ATATGTCTTGATGACAGATTCAATATCCTCTTTGTGGATTCCAACAGATACTCTCATCAG 14518 Query 77113 CATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAA 77172 |||||| || || | ||| ||| |||| | || || || | ||| || |||| | Sbjct 14517 CATATGTTGTGGCCTTTCCACAATCTTTCCCTGAATCTTTAAAAGGTAAGACCTTTCAAG 14458 Query 77173 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220 ||||| |||||||| || | || ||||||||| ||||| || || Sbjct 14457 GGTTTTGAAACCAAAGTAATCATAGTCAAAGTCTCTGTCGTATATGAT 14410 Score = 113 bits (124), Expect = 6e-20 Identities = 169/240 (70%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 76736 ACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTC 76795 |||||| || ||| ||| || ||||| | |||||||||||| | |||| | || | | Sbjct 15073 ACACCCTTTCTTTTGCCACCCCCTTGATCAACATATCTGGCAGTATCATTAAACACACGC 15014 Query 76796 AACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCA 76855 | ||| |||| ||| || || ||||| || ||||||||| ||||||||| ||| ||| Sbjct 15013 AGCATAGGAACAATCCCATTTGATGTTCCGTTTGTTCCACGAATATAACTCCCAGTAGCA 14954 Query 76856 CGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGT 76915 || || || | ||||| ||| ||||| || || ||| || | |||||| Sbjct 14953 CGTATGTTGTGCACAGATACGCCAATTCCCCCAGCTGATTTGCTAATAACAGCACATTCC 14894 Query 76916 TTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975 | | || ||||| |||||||| || |||||||| ||||| | || || |||||| Sbjct 14893 GTAAGAGTATCATATATGCCCTCAATGCTATCATCTTTCATGCATATCAGGAAGCAGCTA 14834 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712551286876800