Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21]
42,990 sequences; 724,284,658 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq728 129 8e-25
seq23166 123 4e-23
seq30480 114 2e-20
>seq728
Length=46982
Score = 129 bits (142), Expect = 8e-25
Identities = 386/596 (65%), Gaps = 0/596 (0%)
Strand=Plus/Plus
Query 46627 AAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTG 46686
||||| ||||||||||| || | ||||| ||||| |||||| || || || || ||
Sbjct 2246 AAACACGCAAAATCACAGTGCAAACCTTCGTCTCTTGAAATTAACTCATTTGAGAAGGTT 2305
Query 46687 AGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAG 46746
| |||||||||| || || ||||| | ||||||||| | ||| ||| |||
Sbjct 2306 AATCCAGGCATTAACCCCCGTTTTTTCAACCAAAATATCGAACAGAAGCTTCCGCTGAAG 2365
Query 46747 AATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTATGA 46806
|| || ||||| ||| || || || || | | ||| || | | | ||
Sbjct 2366 AAAATCCCTTCAACACAGGCAAAAGCCACCAAACGCTCCGCGAAGGTTTCGGACCCATCG 2425
Query 46807 ATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTA 46866
||||| | | ||||| | ||||| || | |||||||| ||||| || || |||
Sbjct 2426 ATCCAACGAAGGGCCCATTTCGCCTTCTTTTCAACACAAGGGATTGTCTCAATCGCACGG 2485
Query 46867 AAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATT 46926
|| | | | ||||| ||| ||| || | || | || | | | ||| |||||
Sbjct 2486 AACAATTTGCTCTTTTCGTCAGAATCCTTGATGTACGACTCCAACAGCAAACTGTACATC 2545
Query 46927 TCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATC 46986
|| ||||| || || ||||| || || || || || || ||| | | || | || |
Sbjct 2546 TCGGAATGGATATTCTCAATGGCGATTTGGAACCCATAGAAAGCACGAACCTCGGCAACC 2605
Query 46987 TGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCA 47046
|| || ||| | || | | ||| | ||||| || || || || ||||||
Sbjct 2606 TGGACGTCTTTCATGAACCTTCCAGCGAGGTTCTCTAAAACGATGCCGTCTGAGGCAGCA 2665
Query 47047 AAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCA 47106
||||| || | ||||| | || |||| ||||| ||| || || || | ||||| |
Sbjct 2666 AAAAAGGCAAGAACATGAGTGATGAAATGCCTTTCACCGGATGTTAGGTTTTCCCAGTGA 2725
Query 47107 TTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTA 47166
|||| | || | ||| |||||||| | |||||||| || ||| ||||| ||
Sbjct 2726 CGAGTATCGGTGGAGAGATCGACTTCTTCTACCGTCCAGAAAGATGCCATGGCTTTCTTG 2785
Query 47167 TACATATTCCATATATCACGATATTGGATCGGAAAAATAACAAATCTATTTGGATT 47222
||||| | ||| || | |||| || || || || ||| |||| || ||| ||
Sbjct 2786 TACATTTCCCAAATCTGTGGATACTGAATTGGGAACATACAGAATCGATCTGGGTT 2841
>seq23166
Length=18651
Score = 123 bits (136), Expect = 4e-23
Identities = 161/223 (72%), Gaps = 0/223 (0%)
Strand=Plus/Plus
Query 76753 ACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCC 76812
|||||| || || | ||||| ||||||| |||| | || | | ||| |||||||| ||
Sbjct 8358 ACCTCCTTGGTCAACATATCGAGCAGTGTCATTAAACACACGTAGCATCGGAATAATTCC 8417
Query 76813 GTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGA 76872
|| ||||| |||||||||||| ||||||||| ||| |||||||||| | |||
Sbjct 8418 ATTTGATGTCCCATTTGTTCCACGAATATAACTCCCAGTGCCACGAATATTGTGCACAGA 8477
Query 76873 TAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGAT 76932
|| || |||||||| || ||| || | |||||| || | |||||||| ||
Sbjct 8478 TACTCCAATTCCTCCAGCAGATTTGCTAATAACAGCACACTCCTTAAGAGTGTCATATAT 8537
Query 76933 GCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975
|||||| |||||||| || ||||| | || || ||||||
Sbjct 8538 GCCCTCAATACTATCGTCTTTCATGCATATCAGGAAGCAGCTA 8580
Score = 91.5 bits (100), Expect = 2e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 76993 AGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATT 77052
|||||| |||||||| | || ||||| ||||||||||||||| | | ||| | | ||
Sbjct 8680 AGTTCCAGCATTAAAAAGAGTTGGAGAAGCATGAGTGAACCATCTCTGAGACATCAAATG 8739
Query 77053 GTATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAA 77112
|| || | || | | ||| ||||| | ||| || ||||||| ||| | |||||
Sbjct 8740 ATAAGTCTTGATGGCAGATTCAATATCATTCTTATGTATCCCTACAGAGACTCTCATCAG 8799
Query 77113 CATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAA 77172
||| || || || | ||||||| || || || || || | ||| ||| ||||
Sbjct 8800 CATGTGTTGTGGCCTTTCTACAACTTTCCCATCAATCTTTAAGAGGTAAGATCGCTCCAG 8859
Query 77173 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220
||||| |||||||| || | || |||||| || || || || ||
Sbjct 8860 GGTTTTGAAACCAAAGTAATCATAGTCAAAGTCCCTGTCATATATGAT 8907
>seq30480
Length=20585
Score = 114 bits (126), Expect = 2e-20
Identities = 162/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 76993 AGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATT 77052
||| || |||||||| | ||| |||||||||||||||||||| || ||| | | ||
Sbjct 14637 AGTGCCAGCATTAAATAGTGTTGGAGATGCATGAGTGAACCAGCGTTGAGACATCAAATG 14578
Query 77053 GTATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAA 77112
||||| | || || | ||| |||||| || || ||||| |||| || | |||||
Sbjct 14577 ATATGTCTTGATGACAGATTCAATATCCTCTTTGTGGATTCCAACAGATACTCTCATCAG 14518
Query 77113 CATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAA 77172
|||||| || || | ||| ||| |||| | || || || | ||| || |||| |
Sbjct 14517 CATATGTTGTGGCCTTTCCACAATCTTTCCCTGAATCTTTAAAAGGTAAGACCTTTCAAG 14458
Query 77173 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220
||||| |||||||| || | || ||||||||| ||||| || ||
Sbjct 14457 GGTTTTGAAACCAAAGTAATCATAGTCAAAGTCTCTGTCGTATATGAT 14410
Score = 113 bits (124), Expect = 6e-20
Identities = 169/240 (70%), Gaps = 0/240 (0%)
Strand=Plus/Minus
Query 76736 ACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTC 76795
|||||| || ||| ||| || ||||| | |||||||||||| | |||| | || | |
Sbjct 15073 ACACCCTTTCTTTTGCCACCCCCTTGATCAACATATCTGGCAGTATCATTAAACACACGC 15014
Query 76796 AACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCA 76855
| ||| |||| ||| || || ||||| || ||||||||| ||||||||| ||| |||
Sbjct 15013 AGCATAGGAACAATCCCATTTGATGTTCCGTTTGTTCCACGAATATAACTCCCAGTAGCA 14954
Query 76856 CGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGT 76915
|| || || | ||||| ||| ||||| || || ||| || | ||||||
Sbjct 14953 CGTATGTTGTGCACAGATACGCCAATTCCCCCAGCTGATTTGCTAATAACAGCACATTCC 14894
Query 76916 TTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975
| | || ||||| |||||||| || |||||||| ||||| | || || ||||||
Sbjct 14893 GTAAGAGTATCATATATGCCCTCAATGCTATCATCTTTCATGCATATCAGGAAGCAGCTA 14834
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 712551286876800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |