Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21] 42,990 sequences; 724,284,658 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq728 168 7e-37 >seq728 Length=46982 Score = 168 bits (186), Expect = 7e-37 Identities = 579/893 (65%), Gaps = 25/893 (3%) Strand=Plus/Plus Query 23217 TTTTTGATATTCCCCAACACGTCTT-TCGAAAAAATTTGTCTTACCCTCTAATGATATAT 23275 ||| ||||| |||||||| | |||| || || ||||| ||||| || | ||| || Sbjct 1957 TTTCTGATACTCCCCAACTC-TCTTCTCAAAGAAATTAGTCTTCCCTTGTAAACTAATCA 2015 Query 23276 TTTCCATAAAATCAAATGGATTAGAAGTATTATATACAGCTTTACATGAT--AATTCCTT 23333 ||||| ||||||||||||| || ||| || || ||| ||| | || | | Sbjct 2016 GCTCCATCCAATCAAATGGATTCTGAGCATTGTA--CATCTTGTCATAACCCAAAGCATC 2073 Query 23334 TAAAAGCCTATCTGCTACAAATTCAATATATTGACACATCAAATCATAGTTTATACCTAT 23393 || | || || |||||||| || || |||| || ||||||||| || || || | Sbjct 2074 CAACAATCTGTCAGCTACAAACTCTATGTATTTACTCATCAAATCTCCATTCATTCCCAC 2133 Query 23394 TAGTTTTACTGGAATCGCATCATATAAGAATAGTTTTTCAATGGAAACAGCATCTTTAAT 23453 || |||| |||||| | | ||| |||| || ||||||||| || Sbjct 2134 CAGAGCACAAGGAAGAGCATCACACACGAACTCCCTTTCTATCTCCACAGCATCTGCAAC 2193 Query 23454 TATTTGAACAATAACT---TCTTCACT-AGGTGGATATTTTAAATACTTAAACAATAAAC 23509 ||| | | ||| || ||| | || | | || | ||| || | |||| Sbjct 2194 AATTC---CCCTGACTCGCTCCTCAGTTAGCTTCGTCCTTAGCAAACTGTAA-AGCAAAC 2249 Query 23510 ATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAATC 23569 | ||||||||||| || | ||||| || || ||| || ||||| || || ||||||| Sbjct 2250 ACGCAAAATCACAGTGCAAACCTTCGTCTCTTGAAATTAACTCATTTGAGAAGGTTAATC 2309 Query 23570 CTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAA 23629 | |||||||| || |||||||| | ||||||||| | | || |||| ||||||| Sbjct 2310 CAGGCATTAACCCCCGTTTTTTCAACCAAAATATCGAACAGAAGCTTCCGCTGAAGAAAA 2369 Query 23630 TACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATAATCAGAAA 23689 | || |||||| ||||| ||||| | ||| | || ||| | | || | Sbjct 2370 TCCCTTCAACACAGGCAAAAGCCACCAAACGCTCCGCGAAGGTT---TCGGACCCATCGA 2426 Query 23690 TCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAATTGCTTTTA 23749 |||| | ||| || |||||| || ||||| ||||| ||||| || | Sbjct 2427 TCCAACGAAGGGCCCATTTCGCCTTCTTTTCAACACAAGGGATTGTCTCAATCGC----A 2482 Query 23750 AGAGAAAAGTT----TTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTATAC 23805 | | || || ||||| ||| ||| | || || | || | || ||||| ||| Sbjct 2483 CGGAACAATTTGCTCTTTTCGTCAGAATCCTTGATGTACGACTCCAACAGCAAACTGTAC 2542 Query 23806 ATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGAC 23865 || || ||||| ||||| ||||| || || || |||||||| ||| | | | || | Sbjct 2543 ATCTCGGAATGGATATTCTCAATGGCGATTTGGAACCCATAGAAAGCACGAACCTCGGCA 2602 Query 23866 AATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAGCA 23925 | || || || || | || ||| ||| | || || ||| || || || ||| Sbjct 2603 ACCTGGACGTCTTTCATGAACCTTCCAGCGAGGTTCTCTAAAACGATGCCGTCTGAGGCA 2662 Query 23926 GCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGTTGATAATTTTTTCCAA 23985 ||||| || |||||||||| | || ||||| |||||| | | || || |||| ||| Sbjct 2663 GCAAAAAAGGCAAGAACATGAGTGATGAAATGCCTTTCACCGGATGTTAGGTTTTCCCAG 2722 Query 23986 TCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAAACTTGCCAAGGCACGC 24045 | | | |||| | || | ||| ||||| || || ||||| ||| ||||| ||| | Sbjct 2723 TGACGAGTATCGGTGGAGAGATCGACTTCTTCTACCGTCCAGAAAGATGCCATGGCTTTC 2782 Query 24046 TTATACATTAGCCAAATATCATTATGTTGTATTGGAAATATTACGAATCTATC 24098 || |||||| |||||| | || || ||||| || || ||||| ||| Sbjct 2783 TTGTACATTTCCCAAATCTGTGGATACTGAATTGGGAACATACAGAATCGATC 2835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521207765386000