Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21] 42,990 sequences; 724,284,658 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq3886 116 3e-21 seq558 116 3e-21 seq30006 114 1e-20 seq796 109 5e-19 seq545 104 2e-17 >seq3886 Length=20373 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || || || || || ||||||||| ||||| ||||||| Sbjct 13227 CCACCACGCAGACGGAGGACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCA 13286 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| |||| ||||||||||| || ||||| |||| | ||| ||||| | |||| Sbjct 13287 AGGGTGCGGCCGTCCTCGAGCTGCTTACCAGCGAAGATCAACCTCTGCTGGTCTGGGGGA 13346 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCA-ACGACGACACAGTGTCGCTCGACTCCAC 41814 | | |||||||||| ||| || ||| | | | | | |||||| ||||| Sbjct 13347 ATTCCCTCCTTGTCCTGGATCTTAGCCTTAACATTATCA-ATGGTGTCGGAGCTTTCCAC 13405 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| || || || || || || || ||||| || ||||||||||| Sbjct 13406 CTCCAAAGTGATGGTCTTTCCGGTGAGGGTCTTCACAAAAATCTGCAT 13453 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || ||||| || || ||||||||| ||||| ||||| | Sbjct 13455 CCACCACGGAGACGGAGGACAAGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCT 13514 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | |||||| | || ||||||||||| || ||||| |||| | ||| ||||| | ||| Sbjct 13515 AAGGTGCGGCCATCCTCGAGCTGCTTCCCAGCGAAGATCAACCTCTGCTGGTCTGGGGGG 13574 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | ||||| ||| ||| || |||| ||| | | | |||||| ||||| Sbjct 13575 ATCCCTTCCTTATCCTGGATCTTAGCCTTC-ACGTTGTCAATGGTGTCGGAGCTTTCCAC 13633 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| || || || || || || || ||||| ||||| |||||||| Sbjct 13634 CTCCAAAGTGATGGTCTTTCCGGTAAGAGTCTTAACGAAGATCTGCAT 13681 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || || ||||| || ||||||||| || || ||||| | Sbjct 12771 CCACCACGGAGACGGAGGACAAGGTGCAGGGTAGACTCCTTCTGGATATTGTAGTCAGCA 12830 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || || |||||||| || ||||| |||| | ||| ||||| | || Sbjct 12831 AGGGTGCGGCCATCCTCAAGCTGCTTACCAGCGAAGATCAACCTCTGCTGGTCTGGTGGG 12890 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | |||||||||| ||| | || |||| || | | | ||||| |||||| Sbjct 12891 ATCCCCTCCTTGTCC-TGAATCTTAGCTTTCACATTGTCGATGGTGTCAGAACTCTCCAC 12949 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| || || || || || |||| ||||| || || |||||||| Sbjct 12950 CTCCAAAGTGATGGTCTTCCCGGTCAAGGTCTTCACAAAGATCTGCAT 12997 Score = 86.0 bits (94), Expect = 6e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 41653 CACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTC 41712 ||||| ||||| || |||||| || ||||| ||||| | | ||||| | || || Sbjct 13016 CACCAAGTGCAGGGTCGACTCCTTTTGGATGTTGTAGTCCGCCAAAGTGCGGCCATCCTC 13075 Query 41713 GAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCAT 41772 |||||||||||| || || |||| | ||| ||||| | ||||| | |||||||| | | Sbjct 13076 GAGCTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCTGGGGGAATACCCTCCTTGT-CTT 13134 Query 41773 GATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTT 41831 | | || || | || | | | |||||| ||| ||||||| || || |||| Sbjct 13135 GGATCTTGGCCTTGACATTGTCAATGGTGTCGGAGCTCTCAACCTCCAGGGTGATGGTTT 13194 Query 41832 TACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | || || || ||||| || || || ||||| Sbjct 13195 TCCCGGTAAGGGTCTTAACAAAGATTTGCAT 13225 >seq558 Length=67963 Score = 116 bits (128), Expect = 3e-21 Identities = 166/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || || || || ||| ||||||||| ||||| ||||| | Sbjct 17092 CCACCACGGAGACGGAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCT 17151 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || | || ||||||||||| |||||||| |||| ||||| ||||| | ||| Sbjct 17152 AGCGTTCGGCCATCCTCGAGCTGCTTACCGGCGAAAATCAATCGCTGCTGGTCTGGTGGA 17211 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || ||||||| | ||| | || || | ||| | | | ||||| ||||| || Sbjct 17212 ATGCCTTCCTTGT-CTTGAATCTTAGCCTTAACATTGTCAATGGTGTCTGATGACTCTAC 17270 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 ||| | || || || || |||||||| ||||| || || |||||||| || Sbjct 17271 CTCTAAGGTAATAGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATTTT 17321 >seq30006 Length=21699 Score = 114 bits (126), Expect = 1e-20 Identities = 142/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 41675 TTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATC 41734 ||||||||||| || || | || || || | || ||||||||||| |||||||| ||| Sbjct 12891 TTCTGAATGTTGTAATCAGCTAGAGTACGTCCATCTTCGAGCTGCTTTCCGGCGAAGATC 12832 Query 41735 AGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC 41794 | ||||| ||||||| |||| | ||||||| | ||| | || |||| || | | Sbjct 12831 AATCGCTGCTGGTCCGGTGGAATACCTTCCTTGT-CTTGAATCTTAGCTTTGACATTGTC 12773 Query 41795 -ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAA 41853 | ||||||||| || || || || | ||| ||||| || ||||| || || || ||||| Sbjct 12772 AATAGTGTCGCTTGATTCAACTTCAAGCGTGATCGTCTTCCCCGTAAGAGTTTTCACGAA 12713 Query 41854 AATCTGCATGTT 41865 |||||||| || Sbjct 12712 GATCTGCATTTT 12701 >seq796 Length=44438 Score = 109 bits (120), Expect = 5e-19 Identities = 165/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| || || ||| ||| || |||||||| || |||| | Sbjct 18831 CCACCACGAAGACGGAGCACCAAGTGAAGAGTGGACTCTTTTTGAATGTTGTAATCGGCG 18772 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || | || || ||||||||||| || || ||||| | ||| ||||| | |||| Sbjct 18771 AGGGTACGGCCATCTTCAAGCTGCTTGCCCGCAAAGATCAGCCTCTGCTGGTCTGGGGGA 18712 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTC 41811 | || ||||||||| || | || |||| |||| | | | ||||| ||| || Sbjct 18711 ATGCCTTCCTTGTCC-TGGATCTTGGCTTTAACGTTGTCAATGGTGTCTGAGCT---TTC 18656 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||| | || || || || || || || || || || || |||||||| Sbjct 18655 CACCTCAAGGGTGATGGTCTTTCCAGTGAGGGTTTTGACAAATATCTGCAT 18605 >seq545 Length=31085 Score = 104 bits (114), Expect = 2e-17 Identities = 156/219 (71%), Gaps = 4/219 (2%) Strand=Plus/Minus Query 41647 ACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTC 41706 ||| ||||||||||| || || ||||||||| ||||| ||||| | || || | | | Sbjct 3312 ACGCAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCAAGAGTCCTCCC 3253 Query 41707 GTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTT 41766 || || || || || || || || |||| ||||||||||| | ||||| | |||||| Sbjct 3252 RTCCTCAAGTTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGGAATACCCTCCTT 3193 Query 41767 GTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGA--CTCCACCTCCACCGTT 41824 || | ||| | ||||||| || | || | || || | ||| ||||||| || Sbjct 3192 GT-CTTGAATCTTTGCTTTCACATTGTCA-ATGGTATCTGAACTCTCAACCTCCAATGTA 3135 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || || || || |||| ||||| || ||||| |||||| Sbjct 3134 ATTGTCTTCCCAGTCAAAGTCTTGACAAAAATTTGCATG 3096 Score = 102 bits (112), Expect = 8e-17 Identities = 155/218 (71%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 41647 ACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTC 41706 ||| ||||||||||| || || ||||||||| ||||| ||||| | || || | | | Sbjct 3540 ACGCAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCAAGAGTCCTCCC 3481 Query 41707 GTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTT 41766 || || || || || || || || |||| ||||||||||| | ||||| | |||||| Sbjct 3480 RTCCTCAAGWTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGGAATACCCTCCTT 3421 Query 41767 GTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGA--CTCCACCTCCACCGTT 41824 || | ||| | ||||||| || | || | || || | ||| ||||||| || Sbjct 3420 GT-CTTGAATCTTTGCTTTCACATTGTCA-ATGGTATCTGAACTCTCAACCTCCAATGTG 3363 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || |||| ||||| || || |||||||| Sbjct 3362 ATTGTCTTCCCAGTCAAAGTCTTCACAAAGATCTGCAT 3325 Score = 98.7 bits (108), Expect = 9e-16 Identities = 165/232 (71%), Gaps = 10/232 (4%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || || | | || ||||| || || ||| ||||| ||||||||||| | Sbjct 3779 CCGCCACGGAGCCTCAGGACAAGATGAAGAGTAGACTCTTTCTGGATGTTATAGTCTGCA 3720 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC-CGCGGG 41754 |||||||| | || || |||||||| || || || || || | |||||| || | ||| Sbjct 3719 AGGGTGCGACCATCCTCAAGCTGCTTACCAGCAAAGATGAGCCTCTGTTGATCTGGTGGG 3660 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACT 41810 | | || ||||||||| || | ||||||| || | | | ||| || ||| || Sbjct 3659 ATCCCT-TCCTTGTCC-TGTATCTTTGCTTTCACATTGTCAATAGTATCAGAGCT---CT 3605 Query 41811 CCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||||||| || || || || || ||||| ||||| || || |||||||| Sbjct 3604 CCACCTCCAATGTGATTGTCTTCCCAGTCAGAGTCTTCACAAAGATCTGCAT 3553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462055569388000