Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21]
42,990 sequences; 724,284,658 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq3886 116 3e-21
seq558 116 3e-21
seq30006 114 1e-20
seq796 109 5e-19
seq545 104 2e-17
>seq3886
Length=20373
Score = 116 bits (128), Expect = 3e-21
Identities = 164/228 (72%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | || || || || || ||||||||| ||||| |||||||
Sbjct 13227 CCACCACGCAGACGGAGGACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCA 13286
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|||||||| |||| ||||||||||| || ||||| |||| | ||| ||||| | ||||
Sbjct 13287 AGGGTGCGGCCGTCCTCGAGCTGCTTACCAGCGAAGATCAACCTCTGCTGGTCTGGGGGA 13346
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCA-ACGACGACACAGTGTCGCTCGACTCCAC 41814
| | |||||||||| ||| || ||| | | | | | |||||| |||||
Sbjct 13347 ATTCCCTCCTTGTCCTGGATCTTAGCCTTAACATTATCA-ATGGTGTCGGAGCTTTCCAC 13405
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
||||| || || || || || || || ||||| || |||||||||||
Sbjct 13406 CTCCAAAGTGATGGTCTTTCCGGTGAGGGTCTTCACAAAAATCTGCAT 13453
Score = 102 bits (112), Expect = 8e-17
Identities = 161/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | || ||||| || || ||||||||| ||||| ||||| |
Sbjct 13455 CCACCACGGAGACGGAGGACAAGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCT 13514
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
| |||||| | || ||||||||||| || ||||| |||| | ||| ||||| | |||
Sbjct 13515 AAGGTGCGGCCATCCTCGAGCTGCTTCCCAGCGAAGATCAACCTCTGCTGGTCTGGGGGG 13574
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| | ||||| ||| ||| || |||| ||| | | | |||||| |||||
Sbjct 13575 ATCCCTTCCTTATCCTGGATCTTAGCCTTC-ACGTTGTCAATGGTGTCGGAGCTTTCCAC 13633
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
||||| || || || || || || || ||||| ||||| ||||||||
Sbjct 13634 CTCCAAAGTGATGGTCTTTCCGGTAAGAGTCTTAACGAAGATCTGCAT 13681
Score = 98.7 bits (108), Expect = 9e-16
Identities = 160/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | || || ||||| || ||||||||| || || ||||| |
Sbjct 12771 CCACCACGGAGACGGAGGACAAGGTGCAGGGTAGACTCCTTCTGGATATTGTAGTCAGCA 12830
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|||||||| | || || |||||||| || ||||| |||| | ||| ||||| | ||
Sbjct 12831 AGGGTGCGGCCATCCTCAAGCTGCTTACCAGCGAAGATCAACCTCTGCTGGTCTGGTGGG 12890
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| | |||||||||| ||| | || |||| || | | | ||||| ||||||
Sbjct 12891 ATCCCCTCCTTGTCC-TGAATCTTAGCTTTCACATTGTCGATGGTGTCAGAACTCTCCAC 12949
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
||||| || || || || || |||| ||||| || || ||||||||
Sbjct 12950 CTCCAAAGTGATGGTCTTCCCGGTCAAGGTCTTCACAAAGATCTGCAT 12997
Score = 86.0 bits (94), Expect = 6e-12
Identities = 147/211 (70%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 41653 CACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTC 41712
||||| ||||| || |||||| || ||||| ||||| | | ||||| | || ||
Sbjct 13016 CACCAAGTGCAGGGTCGACTCCTTTTGGATGTTGTAGTCCGCCAAAGTGCGGCCATCCTC 13075
Query 41713 GAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCAT 41772
|||||||||||| || || |||| | ||| ||||| | ||||| | |||||||| | |
Sbjct 13076 GAGCTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCTGGGGGAATACCCTCCTTGT-CTT 13134
Query 41773 GATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTT 41831
| | || || | || | | | |||||| ||| ||||||| || || ||||
Sbjct 13135 GGATCTTGGCCTTGACATTGTCAATGGTGTCGGAGCTCTCAACCTCCAGGGTGATGGTTT 13194
Query 41832 TACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
| || || || ||||| || || || |||||
Sbjct 13195 TCCCGGTAAGGGTCTTAACAAAGATTTGCAT 13225
>seq558
Length=67963
Score = 116 bits (128), Expect = 3e-21
Identities = 166/231 (72%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | || || || || ||| ||||||||| ||||| ||||| |
Sbjct 17092 CCACCACGGAGACGGAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCT 17151
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| || || | || ||||||||||| |||||||| |||| ||||| ||||| | |||
Sbjct 17152 AGCGTTCGGCCATCCTCGAGCTGCTTACCGGCGAAAATCAATCGCTGCTGGTCTGGTGGA 17211
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| || ||||||| | ||| | || || | ||| | | | ||||| ||||| ||
Sbjct 17212 ATGCCTTCCTTGT-CTTGAATCTTAGCCTTAACATTGTCAATGGTGTCTGATGACTCTAC 17270
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865
||| | || || || || |||||||| ||||| || || |||||||| ||
Sbjct 17271 CTCTAAGGTAATAGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATTTT 17321
>seq30006
Length=21699
Score = 114 bits (126), Expect = 1e-20
Identities = 142/192 (74%), Gaps = 2/192 (1%)
Strand=Plus/Minus
Query 41675 TTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATC 41734
||||||||||| || || | || || || | || ||||||||||| |||||||| |||
Sbjct 12891 TTCTGAATGTTGTAATCAGCTAGAGTACGTCCATCTTCGAGCTGCTTTCCGGCGAAGATC 12832
Query 41735 AGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC 41794
| ||||| ||||||| |||| | ||||||| | ||| | || |||| || | |
Sbjct 12831 AATCGCTGCTGGTCCGGTGGAATACCTTCCTTGT-CTTGAATCTTAGCTTTGACATTGTC 12773
Query 41795 -ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAA 41853
| ||||||||| || || || || | ||| ||||| || ||||| || || || |||||
Sbjct 12772 AATAGTGTCGCTTGATTCAACTTCAAGCGTGATCGTCTTCCCCGTAAGAGTTTTCACGAA 12713
Query 41854 AATCTGCATGTT 41865
|||||||| ||
Sbjct 12712 GATCTGCATTTT 12701
>seq796
Length=44438
Score = 109 bits (120), Expect = 5e-19
Identities = 165/231 (71%), Gaps = 8/231 (3%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | ||||| || || ||| ||| || |||||||| || |||| |
Sbjct 18831 CCACCACGAAGACGGAGCACCAAGTGAAGAGTGGACTCTTTTTGAATGTTGTAATCGGCG 18772
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
||||| || | || || ||||||||||| || || ||||| | ||| ||||| | ||||
Sbjct 18771 AGGGTACGGCCATCTTCAAGCTGCTTGCCCGCAAAGATCAGCCTCTGCTGGTCTGGGGGA 18712
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTC 41811
| || ||||||||| || | || |||| |||| | | | ||||| ||| ||
Sbjct 18711 ATGCCTTCCTTGTCC-TGGATCTTGGCTTTAACGTTGTCAATGGTGTCTGAGCT---TTC 18656
Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|||||| | || || || || || || || || || || || ||||||||
Sbjct 18655 CACCTCAAGGGTGATGGTCTTTCCAGTGAGGGTTTTGACAAATATCTGCAT 18605
>seq545
Length=31085
Score = 104 bits (114), Expect = 2e-17
Identities = 156/219 (71%), Gaps = 4/219 (2%)
Strand=Plus/Minus
Query 41647 ACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTC 41706
||| ||||||||||| || || ||||||||| ||||| ||||| | || || | | |
Sbjct 3312 ACGCAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCAAGAGTCCTCCC 3253
Query 41707 GTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTT 41766
|| || || || || || || || |||| ||||||||||| | ||||| | ||||||
Sbjct 3252 RTCCTCAAGTTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGGAATACCCTCCTT 3193
Query 41767 GTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGA--CTCCACCTCCACCGTT 41824
|| | ||| | ||||||| || | || | || || | ||| ||||||| ||
Sbjct 3192 GT-CTTGAATCTTTGCTTTCACATTGTCA-ATGGTATCTGAACTCTCAACCTCCAATGTA 3135
Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
|| || || || |||| ||||| || ||||| ||||||
Sbjct 3134 ATTGTCTTCCCAGTCAAAGTCTTGACAAAAATTTGCATG 3096
Score = 102 bits (112), Expect = 8e-17
Identities = 155/218 (71%), Gaps = 4/218 (2%)
Strand=Plus/Minus
Query 41647 ACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTC 41706
||| ||||||||||| || || ||||||||| ||||| ||||| | || || | | |
Sbjct 3540 ACGCAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCAAGAGTCCTCCC 3481
Query 41707 GTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTT 41766
|| || || || || || || || |||| ||||||||||| | ||||| | ||||||
Sbjct 3480 RTCCTCAAGWTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGGAATACCCTCCTT 3421
Query 41767 GTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGA--CTCCACCTCCACCGTT 41824
|| | ||| | ||||||| || | || | || || | ||| ||||||| ||
Sbjct 3420 GT-CTTGAATCTTTGCTTTCACATTGTCA-ATGGTATCTGAACTCTCAACCTCCAATGTG 3363
Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|| || || || |||| ||||| || || ||||||||
Sbjct 3362 ATTGTCTTCCCAGTCAAAGTCTTCACAAAGATCTGCAT 3325
Score = 98.7 bits (108), Expect = 9e-16
Identities = 165/232 (71%), Gaps = 10/232 (4%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
||||| || || | | || ||||| || || ||| ||||| ||||||||||| |
Sbjct 3779 CCGCCACGGAGCCTCAGGACAAGATGAAGAGTAGACTCTTTCTGGATGTTATAGTCTGCA 3720
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC-CGCGGG 41754
|||||||| | || || |||||||| || || || || || | |||||| || | |||
Sbjct 3719 AGGGTGCGACCATCCTCAAGCTGCTTACCAGCAAAGATGAGCCTCTGTTGATCTGGTGGG 3660
Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACT 41810
| | || ||||||||| || | ||||||| || | | | ||| || ||| ||
Sbjct 3659 ATCCCT-TCCTTGTCC-TGTATCTTTGCTTTCACATTGTCAATAGTATCAGAGCT---CT 3605
Query 41811 CCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
||||||||| || || || || || ||||| ||||| || || ||||||||
Sbjct 3604 CCACCTCCAATGTGATTGTCTTCCCAGTCAGAGTCTTCACAAAGATCTGCAT 3553
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462055569388000
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