Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16] 3,145 sequences; 823,786,402 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq12 102 2e-16 seq5 102 2e-16 seq10 100 6e-16 seq4 100 6e-16 seq3 100 6e-16 seq9 98.7 2e-15 seq8 98.7 2e-15 seq6 98.7 2e-15 seq2 98.7 2e-15 seq1 98.7 2e-15 >seq12 Length=67145203 Score = 102 bits (112), Expect = 2e-16 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 165708 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGA 165767 |||||||||||||||||| |||||||||| || || |||| || |||||||||||||||| Sbjct 62067372 TTGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 62067313 Query 165768 GCCCCACGATGGGC 165781 |||||||| ||||| Sbjct 62067312 GCCCCACGGTGGGC 62067299 >seq5 Length=65875088 Score = 102 bits (112), Expect = 2e-16 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 165708 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGA 165767 |||||||||||||||||| |||||||||| || || |||| || |||||||||||||||| Sbjct 63171709 TTGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 63171650 Query 165768 GCCCCACGATGGGC 165781 |||||||| ||||| Sbjct 63171649 GCCCCACGGTGGGC 63171636 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 62709339 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 62709398 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 62709399 CCCACGGTGGGC 62709410 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 64384186 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 64384127 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 64384126 CCCACGGTGGGC 64384115 >seq10 Length=65527505 Score = 100 bits (110), Expect = 6e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 165707 CTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCG 165766 || |||||||||||||||| |||||||||| || || |||| || ||||||||||||||| Sbjct 63846903 CTGGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 63846844 Query 165767 AGCCCCACGATGGGC 165781 ||||||||| ||||| Sbjct 63846843 AGCCCCACGGTGGGC 63846829 Score = 100 bits (110), Expect = 6e-16 Identities = 70/80 (88%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 165702 AAACGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGG 165761 |||| | |||||||||||||||| |||||||||| || || |||| || |||||||||| Sbjct 64167560 AAACACAAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGG 64167619 Query 165762 GTTCGAGCCCCACGATGGGC 165781 |||||||||||||| ||||| Sbjct 64167620 GTTCGAGCCCCACGGTGGGC 64167639 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 63842672 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 63842613 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 63842612 CCCACGGTGGGC 63842601 >seq4 Length=66470942 Score = 100 bits (110), Expect = 6e-16 Identities = 73/85 (86%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 165697 ACTTAAAACGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGT 165756 || |||||| |||||||||||||||| |||||||||| || || |||| || ||||| Sbjct 3868481 ACATAAAACAAAAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGT 3868422 Query 165757 CGTGGGTTCGAGCCCCACGATGGGC 165781 ||||||||||||||||||| ||||| Sbjct 3868421 CGTGGGTTCGAGCCCCACGGTGGGC 3868397 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 3940051 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 3940110 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 3940111 CCCACGGTGGGC 3940122 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 64641292 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 64641351 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 64641352 CCCACGGTGGGC 64641363 >seq3 Length=70787664 Score = 100 bits (110), Expect = 6e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 165707 CTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCG 165766 || |||||||||||||||| |||||||||| || || |||| || ||||||||||||||| Sbjct 69178984 CTAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 69178925 Query 165767 AGCCCCACGATGGGC 165781 ||||||||| ||||| Sbjct 69178924 AGCCCCACGGTGGGC 69178910 Score = 95.1 bits (104), Expect = 3e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || || | || |||||||||||||||||| Sbjct 1631364 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTTACCTTGTGGTCGTGGGTTCGAGC 1631423 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 1631424 CCCACGGTGGGC 1631435 Score = 95.1 bits (104), Expect = 3e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||| ||||||||||| Sbjct 5246133 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCATGGGTTCGAGC 5246192 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 5246193 CCCACGGTGGGC 5246204 >seq9 Length=72482091 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 4086301 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 4086360 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 4086361 CCCACGGTGGGC 4086372 >seq8 Length=65866657 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 2055808 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 2055749 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 2055748 CCCACGGTGGGC 2055737 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 59280824 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 59280883 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 59280884 CCCACGGTGGGC 59280895 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 63067386 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 63067327 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 63067326 CCCACGGTGGGC 63067315 >seq6 Length=49751636 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 41737676 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 41737735 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 41737736 CCCACGGTGGGC 41737747 Score = 95.1 bits (104), Expect = 3e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 || ||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 38576689 GCTCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 38576748 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 38576749 CCCACGGTGGGC 38576760 >seq2 Length=55340444 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 54664503 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 54664444 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 54664443 CCCACGGTGGGC 54664432 Score = 96.9 bits (106), Expect = 7e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 ||||||||||||||||| |||||||||| || || |||| || ||||||||||||||||| Sbjct 47841900 TGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 47841841 Query 165769 CCCCACGATGGGC 165781 |||||| ||||| Sbjct 47841840 CCCCACAGTGGGC 47841828 Score = 93.3 bits (102), Expect = 9e-14 Identities = 161/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 230390 TTACAGAAGCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTTA 230449 || |||| || || || | |||| ||||||| | ||||| ||| |||| ||| || Sbjct 54781844 TTGCAGATGCTGTGGAGATAGAAAGGGAGTTCGTGTGTGATGCTCTTCCTTGTGCTCTGG 54781903 Query 230450 TTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTG 230509 | || ||||| | || | ||| | | ||||| || || ||||| ||| | | || | Sbjct 54781904 TGGGAATGAATGGAGATTTGATGAGTAAATACATAGAGTTTGTAGCTGACAGATTGTTGG 54781963 Query 230510 TTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCA 230569 ||| | ||||| || || ||||||| || |||| || || | | |||||||| | Sbjct 54781964 ATGCTTTGGGTTATGACAAGATGTACAATGCTCAGAATCCATTCGATTGGATGGAGCTGA 54782023 Query 230570 TTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGA 230623 || | ||||||||||| || ||||| || ||| | || | || ||||||| Sbjct 54782024 TTAGTTTACAAGGGAAGACTAATTTCTTTGAGAAGAGAGTTGGGGAGTATCAGA 54782077 >seq1 Length=98543444 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 84960322 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84960263 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 84960262 CCCACGGTGGGC 84960251 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 92779174 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 92779233 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 92779234 CCCACGGTGGGC 92779245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057781374651350