Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16] 3,145 sequences; 823,786,402 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq2 147 2e-30 >seq2 Length=55340444 Score = 147 bits (162), Expect = 2e-30 Identities = 379/561 (68%), Gaps = 15/561 (3%) Strand=Plus/Minus Query 16201 ACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAA 16260 |||||| || || || || | ||||||||||| || | || || || || ||||| Sbjct 54781788 ACACGCAAAATCACAGTGCAAACCTTCGTCTCTTGAAATTAACTCATTTGAGAAGGTTAA 54781729 Query 16261 CCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAA-AAGA 16319 || |||||| || ||||| || ||||| ||||||| | || | | ||| |||| Sbjct 54781728 TCCAGGCATTAACCCCCGTTTTTTCAACCAAAATATCGAA-CAGAAGCTTCCGCTGAAGA 54781670 Query 16320 ATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTAC 16379 | || || |||||| | |||||||| | || || |||||| | || | || | Sbjct 54781669 AAATCCCTTCAACACAAGCAAAAGCCACCAAACGCTCCGCGAAAGTTTCGGACCCAT--C 54781612 Query 16380 GAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCT 16439 || |||| | |||||| || || | || | |||| || || || || || Sbjct 54781611 GA-TCCAACGAAGGGCCCATTTCGCCTTCTTTTCAACACAAGGGATTGTCTCAATTGCAC 54781553 Query 16440 TAAACAATTT-CTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTAC 16498 |||||||| ||||||| | | | ||| | || |||| || | ||| ||||||||| Sbjct 54781552 GGAACAATTTGCTCTTTT-CGTCAGAATCCTTGATGTACGACTCCAACAGCAAACTGTAC 54781494 Query 16499 ATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAG-AAGCATCGAGCCTCCGC 16557 || || || || || ||||| ||||| || || || |||||| ||||| |||||||| || Sbjct 54781493 ATCTCGGAATGGATATTCTCAATGGCGATTTGGAACCCATAGAAAGCA-CGAGCCTCGGC 54781435 Query 16558 TATTTGTACTTC-CACGTAAAATCGTTCC-GCCAGGTTCTCATTCACGATACCGTCACTT 16615 | || || || | | || | |||| || |||||||| ||||| ||||| Sbjct 54781434 AACCTGGACATCTTTCATGAA--CCTTCCAGCGAGGTTCTCTAAAACGATGCCGTCTGAG 54781377 Query 16616 GCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATGC 16675 || |||||||| || | | || | ||||||| |||| | ||||| || | | | Sbjct 54781376 GCGGCAAAAAAGGCAAGAACATGAGTGATGAAATGCCTTTCACCGGATGTTAGGTTTTCC 54781317 Query 16676 CAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCA-AAAGCTAGCCACTGC 16734 || | ||| |||| | ||| |||||||||| |||||| |||| | |||| || Sbjct 54781316 CAGTGACGAGTATCGGTGGAGAGATCGACTTCTTCTGCCGTCCAGAAAGAT-GCCATGGC 54781258 Query 16735 CTTTTTATACATTTTCCAAAT 16755 || || ||||||| |||||| Sbjct 54781257 TTTCTTGTACATTTCCCAAAT 54781237 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511394295021400