Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16] 3,145 sequences; 823,786,402 total letters Query= NC_001317.1 Length=30624 Score E Sequences producing significant alignments: (Bits) Value seq1141 273 4e-69 >seq1141 Length=3271 Score = 273 bits (302), Expect = 4e-69 Identities = 564/823 (69%), Gaps = 17/823 (2%) Strand=Plus/Minus Query 2480 CGGGTCGTAGCCAATCCAGACGGGGCGAGAGCCGAACGGATGGT-CGGCGAACGGGGCGA 2538 |||||||||||| | ||| || ||| ||||| || || || | || || | || Sbjct 3229 CGGGTCGTAGCCCACCCATACCTCACGATTACCGAAAGGGCGGGGCGACCAATGGCG-GA 3171 Query 2539 AGTCCTCCCATTCTTCCATCACGTCGACCATGCAGCGCTGCAGCTCCTCGAACGGGAATA 2598 |||||||||| | ||| ||||||||||| |||| ||| | | |||||| | Sbjct 3170 AGTCCTCCCACACCTCCCAGCTGTCGACCATGCCGCGCATGAGCATCGACAGCGGGAAGA 3111 Query 2599 CCGACGCTTTATCGTCGACAAACTCGCACATAAACAGGTTTTTAAAGTCCTCATCACTGT 2658 | || || | || |||| || ||||||| | |||||| | |||||| |||| |||| Sbjct 3110 CAGAGGCCGTGTCATCGATGAAGCCGCACATCAGCAGGTTCTCGAAGTCCGCATCGCTGT 3051 Query 2659 TTTCGCGTTTGAGTTGGTCGAGGTCGAACAGGGTGCAGCCACCGGCAAGGGCGTCCTCAA 2718 || | | |||||||||||||||||| ||||||||||||| | |||||| || | Sbjct 3050 ACTCCAGCCGCAACTGGTCGAGGTCGAACAGGTTGCAGCCACCGGCGATGGCGTCTTCCA 2991 Query 2719 TGGTGACAATCTGCCGCCACTGGCCATCGTCGCAGAGCTGGCC-ACCGGCGAGCGCGCGG 2777 ||||||||||| |||||| || || |||| || |||| || || || ||| | Sbjct 2990 CCGTGACAATCTGTTTCCACTGACCGTCCGCGCACCGCCGGCCGTCCTGCAAGTTCGC-G 2932 Query 2778 TGACTGATGTCAATTTCGATGCGGTCGGCAATACGGCTGCGCCCCTTGTTGAACAGCTCG 2837 || |||| ||||| |||| |||| | | | ||||| ||||||||| || Sbjct 2931 TGGCTGACGTCAACGCGGATGTGGTCTTCCTT---CTTCCGCCCGCGATTGAACAGCGCG 2875 Query 2838 CCAGACCAGAAGGGATAAGCGCCGTGCGCCAGCGTTGAGGGTGTCGAAAAGTAGGTTGAG 2897 ||||||||||| || || || |||| || || | || || ||||| || || || Sbjct 2874 CCAGACCAGAACGGGTACGCTTCGTGGGCAAGGCTCGAAGGCGTCGAGAAATAAGTCTGC 2815 Query 2898 CGCAGATGCTTCTGCGAGGCCATGCCCGAGGCGACTTTGCGCAGCTTCTGAAAATTCGGG 2957 ||| | | || |||||| || ||||| || |||||||||| || || | || Sbjct 2814 CGCCACTTCGAGTGGATGGCCATCCCGGAGGCCACCTTGCGCAGCTCTTGGAAGCGCTGG 2755 Query 2958 ATCCAGAATATTTCATCGACATACAGGTCGCCGTTATGGCTCTGAGCCGTGTTGGAGTTG 3017 |||||||| || || | ||| |||| ||||| || |||||| || ||| | ||| Sbjct 2754 ATCCAGAAGTACTCGTCCAGATAGAGGTTGCCGTGATAGCTCTGCGCGGTGCGTGCGTTT 2695 Query 3018 GTACCGAGAAAAATCAGCTTTGCGCCGTTGTTGCCAATGACAATCGGGTCGCCGGTCAGG 3077 || ||||| ||| |||| | ||||||| | | ||| || ||||| ||||| |||| Sbjct 2694 GTGCCGAGGAAATACAGCGTCGCGCCGT--TCGGCAA-CACCATCGGCTCGCCCTTCAGC 2638 Query 3078 TCGACGTC--AACCAGTC-GCGCAAACTGTATGATGTATTCGCGGAACACGTAAGCCTGC 3134 || ||| | | || | ||| ||||| |||||||||| ||| |||| |||||| Sbjct 2637 TCCACGCCGGCAGCATCCTTCGCGAACTGGATGATGTATTGCTTGAAAACGTGGGCCTGC 2578 Query 3135 GTTTTACTGGCCGACAGAAAAATCTGGTTATGGCCGGTCTTGAGTGC-TCGCAGCAGTGC 3193 | || |||||||||| |||||||| || | || || | | || || | || || Sbjct 2577 GCCTTGCTGGCCGACAAGAAAATCTGATTGCGCCCCGTGGTCAACGCATCAATGAAG-GC 2519 Query 3194 CTCACGGGAAAAATAGAACGTCGCGCCAATCTGGCGGGATTTGAGAATGTCGCGAATACG 3253 ||| || | ||||| |||| || || ||||||||| || |||| | ||| ||||| Sbjct 2518 CTCCCGTGCGAAATACCACGTGGCACCGATCTGGCGGCTCTTCAGAACATTGCGGATACG 2459 Query 3254 GTGTGCCAGTCCTGCGCGGTACCACTGCA-ACTGGTACTCGAA 3295 | | || || || |||||| ||| |||||| ||||| Sbjct 2458 CTCTCTGAGACCCGCTTCGTACCA-GGCACGCTGGTAGTCGAA 2417 Score = 91.5 bits (100), Expect = 3e-14 Identities = 258/389 (66%), Gaps = 17/389 (4%) Strand=Plus/Minus Query 4872 TCGCCAAACTGAACGGCATCAGCGTTGATGACGTCAGCAAAAAATTCACCGTCGAGCCGT 4931 ||||||||||||||||| ||||| ||| | ||||||| ||| | ||| Sbjct 376 TCGCCAAACTGAACGGC------GTTGAACGCGTTGACCGCAAATTCAGCGTGCAACCGA 323 Query 4932 CCGTCACGCAAACGCTGATGAACACCGTGCAGGCGTCATCCGCGTTTCTGCAGATGATTA 4991 |||| ||| |||| | | ||||||| || | ||||| ||| ||| | Sbjct 322 GCGTCCAGCAGCGGCTGGAAACGAAGGTGCAGGAATCGAGTGAATTTCTCCAGCAGATCA 263 Query 4992 ACATTC-TGCCGGTC-GCAGAAATGAAGGGTGAGAAAATCGGTGTCGGTGTGACCGGCAC 5049 || ||| || || | | || | ||||| ||||| ||||| |||| ||| ||||| | Sbjct 262 ACGTTCATGGCGTGCTGGAGCAG-GAAGGC-GAGAAGATCGGCCTCGGCGTGTCCGGCCC 205 Query 5050 CATCGCCAGCACGACCGACACCTCGGGCGACAAAGAGCGCCAGACCGCAGATTTTACCGC 5109 | ||| |||| |||||||| ||| | || || || |||||| || || | | Sbjct 204 GGTGGCCGGCACCACCGACACGACGGTC---AAGGACCGGCAGACCAGCGACATTGCGAC 148 Query 5110 GCTTGA--GTCCAACAAGTACGAGTGCAACCAGATTAACTTTGACTTCCACCTGACCTAT 5167 ||| || ||| ||||||| ||| | |||| |||| ||| |||| | ||||| Sbjct 147 GCTGGATGGTCG--CAAGTACCGCTGCGAGCAGACCAACTCGGACACCCACATCACCTAC 90 Query 5168 AAACGCCTCGACCTGTGGGCGCGTTTTCAGGACTTTCAGCGTCGTATTCGCGACGCCATT 5227 | ||||| ||| ||||||| || | ||||| ||| || |||||||||||||| Sbjct 89 CAGCGCCTTGACGCGTGGGCGAAGTTCCCCGACTTCCAGACGCGCATTCGCGACGCCATC 30 Query 5228 GTCCAGCGTCAGGCACTGGATTTCATCAT 5256 | | || ||||| || ||| |||||| Sbjct 29 CTGCGCCGCCAGGCGCTCGATCGCATCAT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97871544667140