Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16] 3,145 sequences; 823,786,402 total letters Query= NC_001609.1 Length=11624 Score E Sequences producing significant alignments: (Bits) Value seq945 87.8 1e-13 >seq945 Length=3568 Score = 87.8 bits (96), Expect = 1e-13 Identities = 171/252 (68%), Gaps = 8/252 (3%) Strand=Plus/Minus Query 2710 TCCAAATAATCAGCCCACCACTGCATCATTAAACGC----CGCTCATCCAAATGCTCGGA 2765 ||||||||||| | |||||| |||||||| ||| || |||| | || || | Sbjct 566 TCCAAATAATCTGACCACCATTGCATCAT----CGCTTTACGGGCATCGAGATATTCTGC 511 Query 2766 GGTATGGATATATGCCGCACGTACATTATTACGCTCTGAGTGGCTCAGTTGCCTCTCTAT 2825 ||||||| || ||||| || || | |||||||| ||| |||| |||| || | Sbjct 510 TTTATGGATGTAAGCCGCTCGAACGCTGTTACGCTCCTGGTGACTCATCTGCCGTTCAAC 451 Query 2826 CGCGTCATCACTCCATAACCCCGACTCCCCCAACGCACCACGCGCCATAGTCCTAAACCC 2885 ||| || | ||||| || |||||| || |||| || ||||| | || ||| || Sbjct 450 CGCATCCTGCGCCCATAGGCCAGACTCCATCAGGGCACTACATGCCATTGCCCGAAATCC 391 Query 2886 ATGCCCACACACCTCGGTTTTAGTATCATAGCCCATCGCACGCAATGCGCTGTTTACCGT 2945 || || || | || ||| || |||||||||||| || | || | || ||||| Sbjct 390 GTGGCCGCAGATTTCATCTTTTGTGTCATAGCCCATCAGGCGTAGCGCCTTATTGACCGT 331 Query 2946 GTTTTCACTCAT 2957 |||||| | ||| Sbjct 330 GTTTTCGCACAT 319 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 37080288006640